Zihao Li

Zihao Li, Samuel Belkadi, Nicolo Micheletti et al.

Biomedical literature often uses complex language and inaccessible professional terminologies. That is why simplification plays an important role in improving public health literacy. Applying Natural Language Processing (NLP) models to automate such tasks allows for quick and direct accessibility for lay readers. In this work, we investigate the ability of state-of-the-art large language models (LLMs) on the task of biomedical abstract simplification, using the publicly available dataset for plain language adaptation of biomedical abstracts (\textbf{PLABA}). The methods applied include domain fine-tuning and prompt-based learning (PBL) on: 1) Encoder-decoder models (T5, SciFive, and BART), 2) Decoder-only GPT models (GPT-3.5 and GPT-4) from OpenAI and BioGPT, and 3) Control-token mechanisms on BART-based models. We used a range of automatic evaluation metrics, including BLEU, ROUGE, SARI, and BERTscore, and also conducted human evaluations. BART-Large with Control Token (BART-L-w-CT) mechanisms reported the highest SARI score of 46.54 and T5-base reported the highest BERTscore 72.62. In human evaluation, BART-L-w-CTs achieved a better simplicity score over T5-Base (2.9 vs. 2.2), while T5-Base achieved a better meaning preservation score over BART-L-w-CTs (3.1 vs. 2.6). We also categorised the system outputs with examples, hoping this will shed some light for future research on this task. Our code, fine-tuned models, and data splits are available at \url{https://github.com/HECTA-UoM/PLABA-MU} \begin{IEEEkeywords} Large Language Models, Text Simplification, Biomedical NLP, Control Mechanisms, Health Informatics \end{IEEEkeywords}

Shaoxiong Ji, Zihao Li, Jaakko Paavola et al.

In this work, we introduce EMMA-500, a large-scale multilingual language model continue-trained on texts across 546 languages designed for enhanced multilingual performance, focusing on improving language coverage for low-resource languages. To facilitate continual pre-training, we compile the MaLA corpus, a comprehensive multilingual dataset enriched with curated datasets across diverse domains. Leveraging this corpus, we conduct extensive continual pre-training of the Llama 2 7B model, resulting in EMMA-500, which demonstrates robust performance across a wide collection of benchmarks, including a comprehensive set of multilingual tasks. Our results highlight the effectiveness of continual pre-training in expanding large language models' language capacity, particularly for underrepresented languages, demonstrating significant gains in cross-lingual transfer, task generalization, and language adaptability. We release the MaLA corpus, EMMA-500 model weights, scripts, and model generations.

Jiacheng Guo, Zihao Li, Huazheng Wang et al.

In this paper, we study representation learning in partially observable Markov Decision Processes (POMDPs), where the agent learns a decoder function that maps a series of high-dimensional raw observations to a compact representation and uses it for more efficient exploration and planning. We focus our attention on the sub-classes of \textit{$γ$-observable} and \textit{decodable POMDPs}, for which it has been shown that statistically tractable learning is possible, but there has not been any computationally efficient algorithm. We first present an algorithm for decodable POMDPs that combines maximum likelihood estimation (MLE) and optimism in the face of uncertainty (OFU) to perform representation learning and achieve efficient sample complexity, while only calling supervised learning computational oracles. We then show how to adapt this algorithm to also work in the broader class of $γ$-observable POMDPs.

Zihao Li, Shaoxiong Ji, Timothee Mickus et al.

Pretrained language models (PLMs) display impressive performances and have captured the attention of the NLP community. Establishing best practices in pretraining has, therefore, become a major focus of NLP research, especially since insights gained from monolingual English models may not necessarily apply to more complex multilingual models. One significant caveat of the current state of the art is that different works are rarely comparable: they often discuss different parameter counts, training data, and evaluation methodology. This paper proposes a comparison of multilingual pretraining objectives in a controlled methodological environment. We ensure that training data and model architectures are comparable, and discuss the downstream performances across 6 languages that we observe in probing and fine-tuning scenarios. We make two key observations: (1) the architecture dictates which pretraining objective is optimal; (2) multilingual translation is a very effective pretraining objective under the right conditions. We make our code, data, and model weights available at \texttt{\url{https://github.com/Helsinki-NLP/lm-vs-mt}}.

Chris Kelly, Luhui Hu, Cindy Yang et al.

In the current landscape of artificial intelligence, foundation models serve as the bedrock for advancements in both language and vision domains. OpenAI GPT-4 has emerged as the pinnacle in large language models (LLMs), while the computer vision (CV) domain boasts a plethora of state-of-the-art (SOTA) models such as Meta's SAM and DINO, and YOLOS. However, the financial and computational burdens of training new models from scratch remain a significant barrier to progress. In response to this challenge, we introduce UnifiedVisionGPT, a novel framework designed to consolidate and automate the integration of SOTA vision models, thereby facilitating the development of vision-oriented AI. UnifiedVisionGPT distinguishes itself through four key features: (1) provides a versatile multimodal framework adaptable to a wide range of applications, building upon the strengths of multimodal foundation models; (2) seamlessly integrates various SOTA vision models to create a comprehensive multimodal platform, capitalizing on the best components of each model; (3) prioritizes vision-oriented AI, ensuring a more rapid progression in the CV domain compared to the current trajectory of LLMs; and (4) introduces automation in the selection of SOTA vision models, generating optimal results based on diverse multimodal inputs such as text prompts and images. This paper outlines the architecture and capabilities of UnifiedVisionGPT, demonstrating its potential to revolutionize the field of computer vision through enhanced efficiency, versatility, generalization, and performance. Our implementation, along with the unified multimodal framework and comprehensive dataset, is made publicly available at https://github.com/LHBuilder/SA-Segment-Anything.

Shaoxiong Ji, Zihao Li, Jaakko Paavola et al.

This paper investigates a critical design decision in the practice of massively multilingual continual pre-training -- the inclusion of parallel data. Specifically, we study the impact of bilingual translation data for massively multilingual language adaptation of the Llama3 family of models to 500 languages. To this end, we construct the MaLA bilingual translation corpus, containing data from more than 2,500 language pairs. Subsequently, we develop the EMMA-500 Llama 3 suite of four massively multilingual models -- continually pre-trained from the Llama 3 family of base models extensively on diverse data mixes up to 671B tokens -- and explore the effect of continual pre-training with or without bilingual translation data. Comprehensive evaluation across 7 tasks and 12 benchmarks demonstrates that bilingual data tends to enhance language transfer and performance, particularly for low-resource languages. We open-source the MaLA corpus, EMMA-500 Llama 3 suite artefacts, code, and model generations.

Kaitao Song, Xiaohua Wang, Xu Tan et al. · cmu, microsoft-research

In this paper, we propose a novel learning paradigm, termed Chain-of-Model (CoM), which incorporates the causal relationship into the hidden states of each layer as a chain style, thereby introducing great scaling efficiency in model training and inference flexibility in deployment. We introduce the concept of Chain-of-Representation (CoR), which formulates the hidden states at each layer as a combination of multiple sub-representations (i.e., chains) at the hidden dimension level. In each layer, each chain from the output representations can only view all of its preceding chains in the input representations. Consequently, the model built upon CoM framework can progressively scale up the model size by increasing the chains based on the previous models (i.e., chains), and offer multiple sub-models at varying sizes for elastic inference by using different chain numbers. Based on this principle, we devise Chain-of-Language-Model (CoLM), which incorporates the idea of CoM into each layer of Transformer architecture. Based on CoLM, we further introduce CoLM-Air by introducing a KV sharing mechanism, that computes all keys and values within the first chain and then shares across all chains. This design demonstrates additional extensibility, such as enabling seamless LM switching, prefilling acceleration and so on. Experimental results demonstrate our CoLM family can achieve comparable performance to the standard Transformer, while simultaneously enabling greater flexiblity, such as progressive scaling to improve training efficiency and offer multiple varying model sizes for elastic inference, paving a a new way toward building language models. Our code will be released in the future at: https://github.com/microsoft/CoLM.

Zihao Li, Zhichen Zeng, Xiao Lin et al.

Over the past decade, advances in generative modeling, such as generative adversarial networks, masked autoencoders, and diffusion models, have significantly transformed biological research and discovery, enabling breakthroughs in molecule design, protein generation, drug discovery, and beyond. At the same time, biological applications have served as valuable testbeds for evaluating the capabilities of generative models. Recently, flow matching has emerged as a powerful and efficient alternative to diffusion-based generative modeling, with growing interest in its application to problems in biology and life sciences. This paper presents the first comprehensive survey of recent developments in flow matching and its applications in biological domains. We begin by systematically reviewing the foundations and variants of flow matching, and then categorize its applications into three major areas: biological sequence modeling, molecule generation and design, and peptide and protein generation. For each, we provide an in-depth review of recent progress. We also summarize commonly used datasets and software tools, and conclude with a discussion of potential future directions. The corresponding curated resources are available at https://github.com/Violet24K/Awesome-Flow-Matching-Meets-Biology.

Zihan Zhao, Da Ma, Lu Chen et al.

Artificial intelligence (AI) has played an increasingly important role in chemical research. However, most models currently used in chemistry are specialist models that require training and tuning for specific tasks. A more generic and efficient solution would be an AI model that could address many tasks and support free-form dialogue in the broad field of chemistry. In its utmost form, such a generalist AI chemist could be referred to as Chemical General Intelligence. Large language models (LLMs) have recently logged tremendous success in the general domain of natural language processing, showing emerging task generalization and free-form dialogue capabilities. However, domain knowledge of chemistry is largely missing when training general-domain LLMs. The lack of such knowledge greatly hinders the performance of generalist LLMs in the field of chemistry. To this end, we develop ChemDFM, a pioneering LLM for chemistry trained on 34B tokens from chemical literature and textbooks, and fine-tuned using 2.7M instructions. As a result, it can understand and reason with chemical knowledge in free-form dialogue. Quantitative evaluations show that ChemDFM significantly surpasses most representative open-source LLMs. It outperforms GPT-4 on a great portion of chemical tasks, despite the substantial size difference. We have open-sourced the inference codes, evaluation datasets, and model weights of ChemDFM on Huggingface (https://huggingface.co/OpenDFM/ChemDFM-v1.0-13B).

Yunsheng Ma, Liangqi Yuan, Amr Abdelraouf et al.

Ensuring traffic safety and preventing accidents is a critical goal in daily driving, where the advancement of computer vision technologies can be leveraged to achieve this goal. In this paper, we present a multi-view, multi-scale framework for naturalistic driving action recognition and localization in untrimmed videos, namely M$^2$DAR, with a particular focus on detecting distracted driving behaviors. Our system features a weight-sharing, multi-scale Transformer-based action recognition network that learns robust hierarchical representations. Furthermore, we propose a new election algorithm consisting of aggregation, filtering, merging, and selection processes to refine the preliminary results from the action recognition module across multiple views. Extensive experiments conducted on the 7th AI City Challenge Track 3 dataset demonstrate the effectiveness of our approach, where we achieved an overlap score of 0.5921 on the A2 test set. Our source code is available at \url{https://github.com/PurdueDigitalTwin/M2DAR}.

Zihao Li, Yucheng Shi, Zirui Liu et al.

The development of Large Language Models (LLMs) relies on extensive text corpora, which are often unevenly distributed across languages. This imbalance results in LLMs performing significantly better on high-resource languages like English, German, and French, while their capabilities in low-resource languages remain inadequate. Currently, there is a lack of quantitative methods to evaluate the performance of LLMs in these low-resource languages. To address this gap, we propose the Language Ranker, an intrinsic metric designed to benchmark and rank languages based on LLM performance using internal representations. By comparing the LLM's internal representation of various languages against a baseline derived from English, we can assess the model's multilingual capabilities in a robust and language-agnostic manner. Our analysis reveals that high-resource languages exhibit higher similarity scores with English, demonstrating superior performance, while low-resource languages show lower similarity scores, underscoring the effectiveness of our metric in assessing language-specific capabilities. Besides, the experiments show that there is a strong correlation between the LLM's performance in different languages and the proportion of those languages in its pre-training corpus. These insights underscore the efficacy of the Language Ranker as a tool for evaluating LLM performance across different languages, particularly those with limited resources.

Ona de Gibert, Joseph Attieh, Teemu Vahtola et al.

We investigate the potential of LLM-generated synthetic data for improving low-resource Machine Translation (MT). Focusing on seven diverse target languages, we construct a document-level synthetic corpus from English Europarl, and extend it via pivoting to 147 additional language pairs. Automatic and human evaluation confirm its overall high quality. We study its practical application by (i) identifying effective training regimes, (ii) comparing our data with the HPLT dataset, (iii) studying the effect of varying training data size, and (iiii) testing its utility beyond English-centric MT. Finally, we introduce SynOPUS, a public repository for synthetic parallel datasets. Our findings show that LLM-generated synthetic data, even when noisy, can substantially improve MT performance for low-resource languages.

Zihao Li, Shaoxiong Ji, Hengyu Luo et al.

Large Language Models (LLMs) exhibit significant disparities in performance across languages, primarily benefiting high-resource languages while marginalizing underrepresented ones. Continual Pretraining (CPT) has emerged as a promising approach to address this imbalance, although the relative effectiveness of monolingual, bilingual, and code-augmented data strategies remains unclear. This study systematically evaluates 36 CPT configurations involving three multilingual base models, across 30+ languages categorized as altruistic, selfish, and stagnant, spanning various resource levels. Our findings reveal three major insights: (1) Bilingual CPT improves multilingual classification but often causes language mixing issues during generation. (2) Including programming code data during CPT consistently enhances multilingual classification accuracy, particularly benefiting low-resource languages, but introduces a trade-off by slightly degrading generation quality. (3) Contrary to prior work, we observe substantial deviations from language classifications according to their impact on cross-lingual transfer: Languages classified as altruistic often negatively affect related languages, selfish languages show conditional and configuration-dependent behavior, and stagnant languages demonstrate surprising adaptability under certain CPT conditions. These nuanced interactions emphasize the complexity of multilingual representation learning, underscoring the importance of systematic studies on generalizable language classification to inform future multilingual CPT strategies.

Dongqi Fu, Liri Fang, Zihao Li et al.

Graphs, as a relational data structure, have been widely used for various application scenarios, like molecule design and recommender systems. Recently, large language models (LLMs) are reorganizing in the AI community for their expected reasoning and inference abilities. Making LLMs understand graph-based relational data has great potential, including but not limited to (1) distillate external knowledge base for eliminating hallucination and breaking the context window limit for LLMs' inference during the retrieval augmentation generation process; (2) taking graph data as the input and directly solve the graph-based research tasks like protein design and drug discovery. However, inputting the entire graph data to LLMs is not practical due to its complex topological structure, data size, and the lack of effective and efficient semantic graph representations. A natural question arises: Is there a kind of graph representation that can be described by natural language for LLM's understanding and is also easy to require to serve as the raw input for LLMs? Based on statistical computation, graph laws pre-define a set of parameters (e.g., degree, time, diameter) and identifie their relationships and values by observing the topological distribution of plenty of real-world graph data. We believe this kind of parametric representation of graphs, graph laws, can be a solution for making LLMs understand graph data as the input. In this survey, we first review the previous study of graph laws from multiple perspectives, i.e., macroscope and microscope of graphs, low-order and high-order graphs, static and dynamic graphs, different observation spaces, and newly proposed graph parameters. After we review various real-world applications benefiting from the guidance of graph laws, we conclude the paper with current challenges and future research directions.

Zihao Li, Boyi Liu, Zhuoran Yang et al.

We study the Constrained Convex Markov Decision Process (MDP), where the goal is to minimize a convex functional of the visitation measure, subject to a convex constraint. Designing algorithms for a constrained convex MDP faces several challenges, including (1) handling the large state space, (2) managing the exploration/exploitation tradeoff, and (3) solving the constrained optimization where the objective and the constraint are both nonlinear functions of the visitation measure. In this work, we present a model-based algorithm, Variational Primal-Dual Policy Optimization (VPDPO), in which Lagrangian and Fenchel duality are implemented to reformulate the original constrained problem into an unconstrained primal-dual optimization. Moreover, the primal variables are updated by model-based value iteration following the principle of Optimism in the Face of Uncertainty (OFU), while the dual variables are updated by gradient ascent. Moreover, by embedding the visitation measure into a finite-dimensional space, we can handle large state spaces by incorporating function approximation. Two notable examples are (1) Kernelized Nonlinear Regulators and (2) Low-rank MDPs. We prove that with an optimistic planning oracle, our algorithm achieves sublinear regret and constraint violation in both cases and can attain the globally optimal policy of the original constrained problem.

Hengyu Luo, Zihao Li, Joseph Attieh et al.

Large language models (LLMs) are advancing at an unprecedented pace globally, with regions increasingly adopting these models for applications in their primary language. Evaluation of these models in diverse linguistic environments, especially in low-resource languages, has become a major challenge for academia and industry. Existing evaluation frameworks are disproportionately focused on English and a handful of high-resource languages, thereby overlooking the realistic performance of LLMs in multilingual and lower-resource scenarios. To address this gap, we introduce GlotEval, a lightweight framework designed for massively multilingual evaluation. Supporting seven key tasks (machine translation, text classification, summarization, open-ended generation, reading comprehension, sequence labeling, and intrinsic evaluation), spanning over dozens to hundreds of languages, GlotEval highlights consistent multilingual benchmarking, language-specific prompt templates, and non-English-centric machine translation. This enables a precise diagnosis of model strengths and weaknesses in diverse linguistic contexts. A multilingual translation case study demonstrates GlotEval's applicability for multilingual and language-specific evaluations.

Zihao Li, Shaoxiong Ji, Jörg Tiedemann

Test-time scaling (TTS) has enhanced the performance of Reasoning Models (RMs) on various tasks such as math and coding, yet its efficacy in machine translation (MT) remains underexplored. This paper investigates whether increased inference-time computation improves translation quality. We evaluate 12 RMs across a diverse suite of MT benchmarks spanning multiple domains, examining three scenarios: direct translation, forced-reasoning extrapolation, and post-editing. Our findings show that for general-purpose RMs, TTS provides limited and inconsistent benefits for direct translation, with performance quickly plateauing. However, the effectiveness of TTS is unlocked by domain-specific fine-tuning, which aligns a model's reasoning process with task requirements, leading to consistent improvements up to an optimal, self-determined reasoning depth. We also find that forcing a model to reason beyond its natural stopping point consistently degrades translation quality. In contrast, TTS proves highly effective in a post-editing context, reliably turning self-correction into a beneficial process. These results indicate that the value of inference-time computation in MT lies not in enhancing single-pass translation with general models, but in targeted applications like multi-step, self-correction workflows and in conjunction with task-specialized models.

Chris Kelly, Luhui Hu, Jiayin Hu et al.

The evolution of text to visual components facilitates people's daily lives, such as generating image, videos from text and identifying the desired elements within the images. Computer vision models involving the multimodal abilities in the previous days are focused on image detection, classification based on well-defined objects. Large language models (LLMs) introduces the transformation from nature language to visual objects, which present the visual layout for text contexts. OpenAI GPT-4 has emerged as the pinnacle in LLMs, while the computer vision (CV) domain boasts a plethora of state-of-the-art (SOTA) models and algorithms to convert 2D images to their 3D representations. However, the mismatching between the algorithms with the problem could lead to undesired results. In response to this challenge, we propose an unified VisionGPT-3D framework to consolidate the state-of-the-art vision models, thereby facilitating the development of vision-oriented AI. VisionGPT-3D provides a versatile multimodal framework building upon the strengths of multimodal foundation models. It seamlessly integrates various SOTA vision models and brings the automation in the selection of SOTA vision models, identifies the suitable 3D mesh creation algorithms corresponding to 2D depth maps analysis, generates optimal results based on diverse multimodal inputs such as text prompts. Keywords: VisionGPT-3D, 3D vision understanding, Multimodal agent

Ting Chen, Xiaoqi Li, Ying Wang et al.

The gas mechanism in Ethereum charges the execution of every operation to ensure that smart contracts running in EVM (Ethereum Virtual Machine) will be eventually terminated. Failing to properly set the gas costs of EVM operations allows attackers to launch DoS attacks on Ethereum. Although Ethereum recently adjusted the gas costs of EVM operations to defend against known DoS attacks, it remains unknown whether the new setting is proper and how to configure it to defend against unknown DoS attacks. In this paper, we make the first step to address this challenging issue by first proposing an emulation-based framework to automatically measure the resource consumptions of EVM operations. The results reveal that Ethereum's new setting is still not proper. Moreover, we obtain an insight that there may always exist exploitable under-priced operations if the cost is fixed. Hence, we propose a novel gas cost mechanism, which dynamically adjusts the costs of EVM operations according to the number of executions, to thwart DoS attacks. This method punishes the operations that are executed much more frequently than before and lead to high gas costs. To make our solution flexible and secure and avoid frequent update of Ethereum client, we design a special smart contract that collaborates with the updated EVM for dynamic parameter adjustment. Experimental results demonstrate that our method can effectively thwart both known and unknown DoS attacks with flexible parameter settings. Moreover, our method only introduces negligible additional gas consumption for benign users.