Lin Zhang

Lin Zhang, Tiziano Portenier, Orcun Goksel

Photorealistic image generation from simulated label maps are necessitated in several contexts, such as for medical training in virtual reality. With conventional deep learning methods, this task requires images that are paired with semantic annotations, which typically are unavailable. We introduce a contrastive learning framework for generating photorealistic images from simulated label maps, by learning from unpaired sets of both. Due to potentially large scene differences between real images and label maps, existing unpaired image translation methods lead to artifacts of scene modification in synthesized images. We utilize simulated images as surrogate targets for a contrastive loss, while ensuring consistency by utilizing features from a reverse translation network. Our method enables bidirectional label-image translations, which is demonstrated in a variety of scenarios and datasets, including laparoscopy, ultrasound, and driving scenes. By comparing with state-of-the-art unpaired translation methods, our proposed method is shown to generate realistic and scene-accurate translations.

Devavrat Tomar, Lin Zhang, Tiziano Portenier et al.

Interactive simulation of ultrasound imaging greatly facilitates sonography training. Although ray-tracing based methods have shown promising results, obtaining realistic images requires substantial modeling effort and manual parameter tuning. In addition, current techniques still result in a significant appearance gap between simulated images and real clinical scans. Herein we introduce a novel content-preserving image translation framework (ConPres) to bridge this appearance gap, while maintaining the simulated anatomical layout. We achieve this goal by leveraging both simulated images with semantic segmentations and unpaired in-vivo ultrasound scans. Our framework is based on recent contrastive unpaired translation techniques and we propose a regularization approach by learning an auxiliary segmentation-to-real image translation task, which encourages the disentanglement of content and style. In addition, we extend the generator to be class-conditional, which enables the incorporation of additional losses, in particular a cyclic consistency loss, to further improve the translation quality. Qualitative and quantitative comparisons against state-of-the-art unpaired translation methods demonstrate the superiority of our proposed framework.

Lin Zhang, Tiziano Portenier, Orcun Goksel

Purpose. Given the high level of expertise required for navigation and interpretation of ultrasound images, computational simulations can facilitate the training of such skills in virtual reality. With ray-tracing based simulations, realistic ultrasound images can be generated. However, due to computational constraints for interactivity, image quality typically needs to be compromised. Methods. We propose herein to bypass any rendering and simulation process at interactive time, by conducting such simulations during a non-time-critical offline stage and then learning image translation from cross-sectional model slices to such simulated frames. We use a generative adversarial framework with a dedicated generator architecture and input feeding scheme, which both substantially improve image quality without increase in network parameters. Integral attenuation maps derived from cross-sectional model slices, texture-friendly strided convolutions, providing stochastic noise and input maps to intermediate layers in order to preserve locality are all shown herein to greatly facilitate such translation task. Results. Given several quality metrics, the proposed method with only tissue maps as input is shown to provide comparable or superior results to a state-of-the-art that uses additional images of low-quality ultrasound renderings. An extensive ablation study shows the need and benefits from the individual contributions utilized in this work, based on qualitative examples and quantitative ultrasound similarity metrics. To that end, a local histogram statistics based error metric is proposed and demonstrated for visualization of local dissimilarities between ultrasound images.

Lin Zhang, Tiziano Portenier, Christoph Paulus et al.

Ultrasound simulation based on ray tracing enables the synthesis of highly realistic images. It can provide an interactive environment for training sonographers as an educational tool. However, due to high computational demand, there is a trade-off between image quality and interactivity, potentially leading to sub-optimal results at interactive rates. In this work we introduce a deep learning approach based on adversarial training that mitigates this trade-off by improving the quality of simulated images with constant computation time. An image-to-image translation framework is utilized to translate low quality images into high quality versions. To incorporate anatomical information potentially lost in low quality images, we additionally provide segmentation maps to image translation. Furthermore, we propose to leverage information from acoustic attenuation maps to better preserve acoustic shadows and directional artifacts, an invaluable feature for ultrasound image interpretation. The proposed method yields an improvement of 7.2% in Fréchet Inception Distance and 8.9% in patch-based Kullback-Leibler divergence.

Lin Zhang, Valery Vishnevskiy, Orcun Goksel

Simulation-based ultrasound training can be an essential educational tool. Realistic ultrasound image appearance with typical speckle texture can be modeled as convolution of a point spread function with point scatterers representing tissue microstructure. Such scatterer distribution, however, is in general not known and its estimation for a given tissue type is fundamentally an ill-posed inverse problem. In this paper, we demonstrate a convolutional neural network approach for probabilistic scatterer estimation from observed ultrasound data. We herein propose to impose a known statistical distribution on scatterers and learn the mapping between ultrasound image and distribution parameter map by training a convolutional neural network on synthetic images. In comparison with several existing approaches, we demonstrate in numerical simulations and with in-vivo images that the synthesized images from scatterer representations estimated with our approach closely match the observations with varying acquisition parameters such as compression and rotation of the imaged domain.

Lin Zhang, Valery Vishnevskiy, Andras Jakab et al.

Intravoxel incoherent motion (IVIM) imaging allows contrast-agent free in vivo perfusion quantification with magnetic resonance imaging (MRI). However, its use is limited by typically low accuracy due to low signal-to-noise ratio (SNR) at large gradient encoding magnitudes as well as dephasing artefacts caused by subject motion, which is particularly challenging in fetal MRI. To mitigate this problem, we propose an implicit IVIM signal acquisition model with which we learn full posterior distribution of perfusion parameters using artificial neural networks. This posterior then encapsulates the uncertainty of the inferred parameter estimates, which we validate herein via numerical experiments with rejection-based Bayesian sampling. Compared to state-of-the-art IVIM estimation method of segmented least-squares fitting, our proposed approach improves parameter estimation accuracy by 65% on synthetic anisotropic perfusion data. On paired rescans of in vivo fetal MRI, our method increases repeatability of parameter estimation in placenta by 46%.

Lin Zhang, Neerav Karani, Christine Tanner et al.

Navigated 2D multi-slice dynamic Magnetic Resonance (MR) imaging enables high contrast 4D MR imaging during free breathing and provides in-vivo observations for treatment planning and guidance. Navigator slices are vital for retrospective stacking of 2D data slices in this method. However, they also prolong the acquisition sessions. Temporal interpolation of navigator slices an be used to reduce the number of navigator acquisitions without degrading specificity in stacking. In this work, we propose a convolutional neural network (CNN) based method for temporal interpolation via motion field prediction. The proposed formulation incorporates the prior knowledge that a motion field underlies changes in the image intensities over time. Previous approaches that interpolate directly in the intensity space are prone to produce blurry images or even remove structures in the images. Our method avoids such problems and faithfully preserves the information in the image. Further, an important advantage of our formulation is that it provides an unsupervised estimation of bi-directional motion fields. We show that these motion fields can be used to halve the number of registrations required during 4D reconstruction, thus substantially reducing the reconstruction time.