Yang Liu

Lihang Liu, Shanzhuo Zhang, Yang Xue et al. · baidu

The AlphaFold series has transformed protein structure prediction with remarkable accuracy, often matching experimental methods. AlphaFold2, AlphaFold-Multimer, and the latest AlphaFold3 represent significant strides in predicting single protein chains, protein complexes, and biomolecular structures. While AlphaFold2 and AlphaFold-Multimer are open-sourced, facilitating rapid and reliable predictions, AlphaFold3 remains partially accessible through a limited online server and has not been open-sourced, restricting further development. To address these challenges, the PaddleHelix team is developing HelixFold3, aiming to replicate AlphaFold3's capabilities. Leveraging insights from previous models and extensive datasets, HelixFold3 achieves accuracy comparable to AlphaFold3 in predicting the structures of the conventional ligands, nucleic acids, and proteins. The initial release of HelixFold3 is available as open source on GitHub for academic research, promising to advance biomolecular research and accelerate discoveries. The latest version will be continuously updated on the HelixFold3 web server, providing both interactive visualization and API access.

Feiyuan Zhang, Dezhi Zhu, James Ming et al.

Retrieval-Augmented Generation (RAG) systems have shown substantial benefits in applications such as question answering and multi-turn dialogue \citep{lewis2020retrieval}. However, traditional RAG methods, while leveraging static knowledge bases, often overlook the potential of dynamic historical information in ongoing conversations. To bridge this gap, we introduce DH-RAG, a Dynamic Historical Context-Powered Retrieval-Augmented Generation Method for Multi-Turn Dialogue. DH-RAG is inspired by human cognitive processes that utilize both long-term memory and immediate historical context in conversational responses \citep{stafford1987conversational}. DH-RAG is structured around two principal components: a History-Learning based Query Reconstruction Module, designed to generate effective queries by synthesizing current and prior interactions, and a Dynamic History Information Updating Module, which continually refreshes historical context throughout the dialogue. The center of DH-RAG is a Dynamic Historical Information database, which is further refined by three strategies within the Query Reconstruction Module: Historical Query Clustering, Hierarchical Matching, and Chain of Thought Tracking. Experimental evaluations show that DH-RAG significantly surpasses conventional models on several benchmarks, enhancing response relevance, coherence, and dialogue quality.