16.9LGSep 11, 2022
Efficient Approximate Kernel Based Spike Sequence ClassificationSarwan Ali, Bikram Sahoo, Muhammad Asad Khan et al.
Machine learning (ML) models, such as SVM, for tasks like classification and clustering of sequences, require a definition of distance/similarity between pairs of sequences. Several methods have been proposed to compute the similarity between sequences, such as the exact approach that counts the number of matches between $k$-mers (sub-sequences of length $k$) and an approximate approach that estimates pairwise similarity scores. Although exact methods yield better classification performance, they pose high computational costs, limiting their applicability to a small number of sequences. The approximate algorithms are proven to be more scalable and perform comparably to (sometimes better than) the exact methods -- they are designed in a "general" way to deal with different types of sequences (e.g., music, protein, etc.). Although general applicability is a desired property of an algorithm, it is not the case in all scenarios. For example, in the current COVID-19 (coronavirus) pandemic, there is a need for an approach that can deal specifically with the coronavirus. To this end, we propose a series of ways to improve the performance of the approximate kernel (using minimizers and information gain) in order to enhance its predictive performance pm coronavirus sequences. More specifically, we improve the quality of the approximate kernel using domain knowledge (computed using information gain) and efficient preprocessing (using minimizers computation) to classify coronavirus spike protein sequences corresponding to different variants (e.g., Alpha, Beta, Gamma). We report results using different classification and clustering algorithms and evaluate their performance using multiple evaluation metrics. Using two datasets, we show that our proposed method helps improve the kernel's performance compared to the baseline and state-of-the-art approaches in the healthcare domain.
2.3BMJul 15, 2023
Sequence-Based Nanobody-Antigen Binding PredictionUsama Sardar, Sarwan Ali, Muhammad Sohaib Ayub et al.
Nanobodies (Nb) are monomeric heavy-chain fragments derived from heavy-chain only antibodies naturally found in Camelids and Sharks. Their considerably small size (~3-4 nm; 13 kDa) and favorable biophysical properties make them attractive targets for recombinant production. Furthermore, their unique ability to bind selectively to specific antigens, such as toxins, chemicals, bacteria, and viruses, makes them powerful tools in cell biology, structural biology, medical diagnostics, and future therapeutic agents in treating cancer and other serious illnesses. However, a critical challenge in nanobodies production is the unavailability of nanobodies for a majority of antigens. Although some computational methods have been proposed to screen potential nanobodies for given target antigens, their practical application is highly restricted due to their reliance on 3D structures. Moreover, predicting nanobodyantigen interactions (binding) is a time-consuming and labor-intensive task. This study aims to develop a machine-learning method to predict Nanobody-Antigen binding solely based on the sequence data. We curated a comprehensive dataset of Nanobody-Antigen binding and nonbinding data and devised an embedding method based on gapped k-mers to predict binding based only on sequences of nanobody and antigen. Our approach achieves up to 90% accuracy in binding prediction and is significantly more efficient compared to the widely-used computational docking technique.
6.6LGFeb 17, 2023
Efficient Classification of SARS-CoV-2 Spike Sequences Using Federated LearningPrakash Chourasia, Taslim Murad, Zahra Tayebi et al.
This paper presents a federated learning (FL) approach to train an AI model for SARS-Cov-2 variant classification. We analyze the SARS-CoV-2 spike sequences in a distributed way, without data sharing, to detect different variants of this rapidly mutating coronavirus. Our method maintains the confidentiality of local data (that could be stored in different locations) yet allows us to reliably detect and identify different known and unknown variants of the novel coronavirus SARS-CoV-2. Using the proposed approach, we achieve an overall accuracy of $93\%$ on the coronavirus variant identification task. We also provide details regarding how the proposed model follows the main laws of federated learning, such as Laws of data ownership, data privacy, model aggregation, and model heterogeneity. Since the proposed model is distributed, it could scale on ``Big Data'' easily. We plan to use this proof-of-concept to implement a privacy-preserving pandemic response strategy.
Impact Of Missing Data Imputation On The Fairness And Accuracy Of Graph Node ClassifiersHaris Mansoor, Sarwan Ali, Shafiq Alam et al.
Analysis of the fairness of machine learning (ML) algorithms recently attracted many researchers' interest. Most ML methods show bias toward protected groups, which limits the applicability of ML models in many applications like crime rate prediction etc. Since the data may have missing values which, if not appropriately handled, are known to further harmfully affect fairness. Many imputation methods are proposed to deal with missing data. However, the effect of missing data imputation on fairness is not studied well. In this paper, we analyze the effect on fairness in the context of graph data (node attributes) imputation using different embedding and neural network methods. Extensive experiments on six datasets demonstrate severe fairness issues in missing data imputation under graph node classification. We also find that the choice of the imputation method affects both fairness and accuracy. Our results provide valuable insights into graph data fairness and how to handle missingness in graphs efficiently. This work also provides directions regarding theoretical studies on fairness in graph data.
3.3GNApr 24, 2023
Virus2Vec: Viral Sequence Classification Using Machine LearningSarwan Ali, Babatunde Bello, Prakash Chourasia et al.
Understanding the host-specificity of different families of viruses sheds light on the origin of, e.g., SARS-CoV-2, rabies, and other such zoonotic pathogens in humans. It enables epidemiologists, medical professionals, and policymakers to curb existing epidemics and prevent future ones promptly. In the family Coronaviridae (of which SARS-CoV-2 is a member), it is well-known that the spike protein is the point of contact between the virus and the host cell membrane. On the other hand, the two traditional mammalian orders, Carnivora (carnivores) and Chiroptera (bats) are recognized to be responsible for maintaining and spreading the Rabies Lyssavirus (RABV). We propose Virus2Vec, a feature-vector representation for viral (nucleotide or amino acid) sequences that enable vector-space-based machine learning models to identify viral hosts. Virus2Vec generates numerical feature vectors for unaligned sequences, allowing us to forego the computationally expensive sequence alignment step from the pipeline. Virus2Vec leverages the power of both the \emph{minimizer} and position weight matrix (PWM) to generate compact feature vectors. Using several classifiers, we empirically evaluate Virus2Vec on real-world spike sequences of Coronaviridae and rabies virus sequence data to predict the host (identifying the reservoirs of infection). Our results demonstrate that Virus2Vec outperforms the predictive accuracies of baseline and state-of-the-art methods.
7.3IVJun 8, 2023
Robust Brain Age Estimation via Regression Models and MRI-derived FeaturesMansoor Ahmed, Usama Sardar, Sarwan Ali et al.
The determination of biological brain age is a crucial biomarker in the assessment of neurological disorders and understanding of the morphological changes that occur during aging. Various machine learning models have been proposed for estimating brain age through Magnetic Resonance Imaging (MRI) of healthy controls. However, developing a robust brain age estimation (BAE) framework has been challenging due to the selection of appropriate MRI-derived features and the high cost of MRI acquisition. In this study, we present a novel BAE framework using the Open Big Healthy Brain (OpenBHB) dataset, which is a new multi-site and publicly available benchmark dataset that includes region-wise feature metrics derived from T1-weighted (T1-w) brain MRI scans of 3965 healthy controls aged between 6 to 86 years. Our approach integrates three different MRI-derived region-wise features and different regression models, resulting in a highly accurate brain age estimation with a Mean Absolute Error (MAE) of 3.25 years, demonstrating the framework's robustness. We also analyze our model's regression-based performance on gender-wise (male and female) healthy test groups. The proposed BAE framework provides a new approach for estimating brain age, which has important implications for the understanding of neurological disorders and age-related brain changes.
3.8LGApr 1, 2023
BioSequence2Vec: Efficient Embedding Generation For Biological SequencesSarwan Ali, Usama Sardar, Murray Patterson et al.
Representation learning is an important step in the machine learning pipeline. Given the current biological sequencing data volume, learning an explicit representation is prohibitive due to the dimensionality of the resulting feature vectors. Kernel-based methods, e.g., SVM, are a proven efficient and useful alternative for several machine learning (ML) tasks such as sequence classification. Three challenges with kernel methods are (i) the computation time, (ii) the memory usage (storing an $n\times n$ matrix), and (iii) the usage of kernel matrices limited to kernel-based ML methods (difficult to generalize on non-kernel classifiers). While (i) can be solved using approximate methods, challenge (ii) remains for typical kernel methods. Similarly, although non-kernel-based ML methods can be applied to kernel matrices by extracting principal components (kernel PCA), it may result in information loss, while being computationally expensive. In this paper, we propose a general-purpose representation learning approach that embodies kernel methods' qualities while avoiding computation, memory, and generalizability challenges. This involves computing a low-dimensional embedding of each sequence, using random projections of its $k$-mer frequency vectors, significantly reducing the computation needed to compute the dot product and the memory needed to store the resulting representation. Our proposed fast and alignment-free embedding method can be used as input to any distance (e.g., $k$ nearest neighbors) and non-distance (e.g., decision tree) based ML method for classification and clustering tasks. Using different forms of biological sequences as input, we perform a variety of real-world classification tasks, such as SARS-CoV-2 lineage and gene family classification, outperforming several state-of-the-art embedding and kernel methods in predictive performance.
CAMP: A Context-Aware Cricket Players Performance MetricMuhammad Sohaib Ayub, Naimat Ullah, Sarwan Ali et al.
Cricket is the second most popular sport after soccer in terms of viewership. However, the assessment of individual player performance, a fundamental task in team sports, is currently primarily based on aggregate performance statistics, including average runs and wickets taken. We propose Context-Aware Metric of player Performance, CAMP, to quantify individual players' contributions toward a cricket match outcome. CAMP employs data mining methods and enables effective data-driven decision-making for selection and drafting, coaching and training, team line-ups, and strategy development. CAMP incorporates the exact context of performance, such as opponents' strengths and specific circumstances of games, such as pressure situations. We empirically evaluate CAMP on data of limited-over cricket matches between 2001 and 2019. In every match, a committee of experts declares one player as the best player, called Man of the M}atch (MoM). The top two rated players by CAMP match with MoM in 83\% of the 961 games. Thus, the CAMP rating of the best player closely matches that of the domain experts. By this measure, CAMP significantly outperforms the current best-known players' contribution measure based on the Duckworth-Lewis-Stern (DLS) method.
4.1LGDec 10, 2025
Sequence-to-Image Transformation for Sequence Classification Using Rips Complex Construction and Chaos Game RepresentationSarwan Ali, Taslim Murad, Imdadullah Khan
Traditional feature engineering approaches for molecular sequence classification suffer from sparsity issues and computational complexity, while deep learning models often underperform on tabular biological data. This paper introduces a novel topological approach that transforms molecular sequences into images by combining Chaos Game Representation (CGR) with Rips complex construction from algebraic topology. Our method maps sequence elements to 2D coordinates via CGR, computes pairwise distances, and constructs Rips complexes to capture both local structural and global topological features. We provide formal guarantees on representation uniqueness, topological stability, and information preservation. Extensive experiments on anticancer peptide datasets demonstrate superior performance over vector-based, sequence language models, and existing image-based methods, achieving 86.8\% and 94.5\% accuracy on breast and lung cancer datasets, respectively. The topological representation preserves critical sequence information while enabling effective utilization of vision-based deep learning architectures for molecular sequence analysis.
2.6LGOct 16, 2024
Position Specific Scoring Is All You Need? Revisiting Protein Sequence Classification TasksSarwan Ali, Taslim Murad, Prakash Chourasia et al.
Understanding the structural and functional characteristics of proteins are crucial for developing preventative and curative strategies that impact fields from drug discovery to policy development. An important and popular technique for examining how amino acids make up these characteristics of the protein sequences with position-specific scoring (PSS). While the string kernel is crucial in natural language processing (NLP), it is unclear if string kernels can extract biologically meaningful information from protein sequences, despite the fact that they have been shown to be effective in the general sequence analysis tasks. In this work, we propose a weighted PSS kernel matrix (or W-PSSKM), that combines a PSS representation of protein sequences, which encodes the frequency information of each amino acid in a sequence, with the notion of the string kernel. This results in a novel kernel function that outperforms many other approaches for protein sequence classification. We perform extensive experimentation to evaluate the proposed method. Our findings demonstrate that the W-PSSKM significantly outperforms existing baselines and state-of-the-art methods and achieves up to 45.1\% improvement in classification accuracy.
2.6LGDec 29, 2024
Converting Time Series Data to Numeric Representations Using Alphabetic Mapping and k-mer strategySarwan Ali, Tamkanat E Ali, Imdad Ullah Khan et al.
In the realm of data analysis and bioinformatics, representing time series data in a manner akin to biological sequences offers a novel approach to leverage sequence analysis techniques. Transforming time series signals into molecular sequence-type representations allows us to enhance pattern recognition by applying sophisticated sequence analysis techniques (e.g. $k$-mers based representation) developed in bioinformatics, uncovering hidden patterns and relationships in complex, non-linear time series data. This paper proposes a method to transform time series signals into biological/molecular sequence-type representations using a unique alphabetic mapping technique. By generating 26 ranges corresponding to the 26 letters of the English alphabet, each value within the time series is mapped to a specific character based on its range. This conversion facilitates the application of sequence analysis algorithms, typically used in bioinformatics, to analyze time series data. We demonstrate the effectiveness of this approach by converting real-world time series signals into character sequences and performing sequence classification. The resulting sequences can be utilized for various sequence-based analysis techniques, offering a new perspective on time series data representation and analysis.
2.6LGDec 29, 2024
Hilbert Curve Based Molecular Sequence AnalysisSarwan Ali, Tamkanat E Ali, Imdad Ullah Khan et al.
Accurate molecular sequence analysis is a key task in the field of bioinformatics. To apply molecular sequence classification algorithms, we first need to generate the appropriate representations of the sequences. Traditional numeric sequence representation techniques are mostly based on sequence alignment that faces limitations in the form of lack of accuracy. Although several alignment-free techniques have also been introduced, their tabular data form results in low performance when used with Deep Learning (DL) models compared to the competitive performance observed in the case of image-based data. To find a solution to this problem and to make Deep Learning (DL) models function to their maximum potential while capturing the important spatial information in the sequence data, we propose a universal Hibert curve-based Chaos Game Representation (CGR) method. This method is a transformative function that involves a novel Alphabetic index mapping technique used in constructing Hilbert curve-based image representation from molecular sequences. Our method can be globally applied to any type of molecular sequence data. The Hilbert curve-based image representations can be used as input to sophisticated vision DL models for sequence classification. The proposed method shows promising results as it outperforms current state-of-the-art methods by achieving a high accuracy of $94.5$\% and an F1 score of $93.9\%$ when tested with the CNN model on the lung cancer dataset. This approach opens up a new horizon for exploring molecular sequence analysis using image classification methods.
2.6LGDec 19, 2024
Computing Gram Matrix for SMILES Strings using RDKFingerprint and Sinkhorn-Knopp AlgorithmSarwan Ali, Haris Mansoor, Prakash Chourasia et al.
In molecular structure data, SMILES (Simplified Molecular Input Line Entry System) strings are used to analyze molecular structure design. Numerical feature representation of SMILES strings is a challenging task. This work proposes a kernel-based approach for encoding and analyzing molecular structures from SMILES strings. The proposed approach involves computing a kernel matrix using the Sinkhorn-Knopp algorithm while using kernel principal component analysis (PCA) for dimensionality reduction. The resulting low-dimensional embeddings are then used for classification and regression analysis. The kernel matrix is computed by converting the SMILES strings into molecular structures using the Morgan Fingerprint, which computes a fingerprint for each molecule. The distance matrix is computed using the pairwise kernels function. The Sinkhorn-Knopp algorithm is used to compute the final kernel matrix that satisfies the constraints of a probability distribution. This is achieved by iteratively adjusting the kernel matrix until the marginal distributions of the rows and columns match the desired marginal distributions. We provided a comprehensive empirical analysis of the proposed kernel method to evaluate its goodness with greater depth. The suggested method is assessed for drug subcategory prediction (classification task) and solubility AlogPS ``Aqueous solubility and Octanol/Water partition coefficient" (regression task) using the benchmark SMILES string dataset. The outcomes show the proposed method outperforms several baseline methods in terms of supervised analysis and has potential uses in molecular design and drug discovery. Overall, the suggested method is a promising avenue for kernel methods-based molecular structure analysis and design.
4.2NEDec 19, 2024
Neuromorphic Spiking Neural Network Based Classification of COVID-19 Spike SequencesTaslim Murad, Prakash Chourasia, Sarwan Ali et al.
The availability of SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) virus data post-COVID has reached exponentially to an enormous magnitude, opening research doors to analyze its behavior. Various studies are conducted by researchers to gain a deeper understanding of the virus, like genomic surveillance, etc, so that efficient prevention mechanisms can be developed. However, the unstable nature of the virus (rapid mutations, multiple hosts, etc) creates challenges in designing analytical systems for it. Therefore, we propose a neural network-based (NN) mechanism to perform an efficient analysis of the SARS-CoV-2 data, as NN portrays generalized behavior upon training. Moreover, rather than using the full-length genome of the virus, we apply our method to its spike region, as this region is known to have predominant mutations and is used to attach to the host cell membrane. In this paper, we introduce a pipeline that first converts the spike protein sequences into a fixed-length numerical representation and then uses Neuromorphic Spiking Neural Network to classify those sequences. We compare the performance of our method with various baselines using real-world SARS-CoV-2 spike sequence data and show that our method is able to achieve higher predictive accuracy compared to the recent baselines.
9.9LGSep 2, 2021
Computing Graph Descriptors on Edge StreamsZohair Raza Hassan, Sarwan Ali, Imdadullah Khan et al.
Feature extraction is an essential task in graph analytics. These feature vectors, called graph descriptors, are used in downstream vector-space-based graph analysis models. This idea has proved fruitful in the past, with spectral-based graph descriptors providing state-of-the-art classification accuracy. However, known algorithms to compute meaningful descriptors do not scale to large graphs since: (1) they require storing the entire graph in memory, and (2) the end-user has no control over the algorithm's runtime. In this paper, we present streaming algorithms to approximately compute three different graph descriptors capturing the essential structure of graphs. Operating on edge streams allows us to avoid storing the entire graph in memory, and controlling the sample size enables us to keep the runtime of our algorithms within desired bounds. We demonstrate the efficacy of the proposed descriptors by analyzing the approximation error and classification accuracy. Our scalable algorithms compute descriptors of graphs with millions of edges within minutes. Moreover, these descriptors yield predictive accuracy comparable to the state-of-the-art methods but can be computed using only 25% as much memory.
11.3PEAug 18, 2021
Effective and scalable clustering of SARS-CoV-2 sequencesSarwan Ali, Tamkanat-E-Ali, Muhammad Asad Khan et al.
SARS-CoV-2, like any other virus, continues to mutate as it spreads, according to an evolutionary process. Unlike any other virus, the number of currently available sequences of SARS-CoV-2 in public databases such as GISAID is already several million. This amount of data has the potential to uncover the evolutionary dynamics of a virus like never before. However, a million is already several orders of magnitude beyond what can be processed by the traditional methods designed to reconstruct a virus's evolutionary history, such as those that build a phylogenetic tree. Hence, new and scalable methods will need to be devised in order to make use of the ever increasing number of viral sequences being collected. Since identifying variants is an important part of understanding the evolution of a virus, in this paper, we propose an approach based on clustering sequences to identify the current major SARS-CoV-2 variants. Using a $k$-mer based feature vector generation and efficient feature selection methods, our approach is effective in identifying variants, as well as being efficient and scalable to millions of sequences. Such a clustering method allows us to show the relative proportion of each variant over time, giving the rate of spread of each variant in different locations -- something which is important for vaccine development and distribution. We also compute the importance of each amino acid position of the spike protein in identifying a given variant in terms of information gain. Positions of high variant-specific importance tend to agree with those reported by the USA's Centers for Disease Control and Prevention (CDC), further demonstrating our approach.
14.2QMAug 7, 2021
A k-mer Based Approach for SARS-CoV-2 Variant IdentificationSarwan Ali, Bikram Sahoo, Naimat Ullah et al.
With the rapid spread of the novel coronavirus (COVID-19) across the globe and its continuous mutation, it is of pivotal importance to design a system to identify different known (and unknown) variants of SARS-CoV-2. Identifying particular variants helps to understand and model their spread patterns, design effective mitigation strategies, and prevent future outbreaks. It also plays a crucial role in studying the efficacy of known vaccines against each variant and modeling the likelihood of breakthrough infections. It is well known that the spike protein contains most of the information/variation pertaining to coronavirus variants. In this paper, we use spike sequences to classify different variants of the coronavirus in humans. We show that preserving the order of the amino acids helps the underlying classifiers to achieve better performance. We also show that we can train our model to outperform the baseline algorithms using only a small number of training samples ($1\%$ of the data). Finally, we show the importance of the different amino acids which play a key role in identifying variants and how they coincide with those reported by the USA's Centers for Disease Control and Prevention (CDC).
10.6CVFeb 2, 2020
Effect of Analysis Window and Feature Selection on Classification of Hand Movements Using EMG SignalAsad Ullah, Sarwan Ali, Imdadullah Khan et al.
Electromyography (EMG) signals have been successfully employed for driving prosthetic limbs of a single or double degree of freedom. This principle works by using the amplitude of the EMG signals to decide between one or two simpler movements. This method underperforms as compare to the contemporary advances done at the mechanical, electronics, and robotics end, and it lacks intuition. Recently, research on myoelectric control based on pattern recognition (PR) shows promising results with the aid of machine learning classifiers. Using the approach termed as, EMG-PR, EMG signals are divided into analysis windows, and features are extracted for each window. These features are then fed to the machine learning classifiers as input. By offering multiple class movements and intuitive control, this method has the potential to power an amputated subject to perform everyday life movements. In this paper, we investigate the effect of the analysis window and feature selection on classification accuracy of different hand and wrist movements using time-domain features. We show that effective data preprocessing and optimum feature selection helps to improve the classification accuracy of hand movements. We use publicly available hand and wrist gesture dataset of $40$ intact subjects for experimentation. Results computed using different classification algorithms show that the proposed preprocessing and features selection outperforms the baseline and achieve up to $98\%$ classification accuracy.
2.9CRFeb 2, 2020
Permissioned Blockchain-Based Security for SDN in IoT Cloud NetworksSafi Faizullah, Muhammad Asad Khan, Ali Alzahrani et al.
The advancement in cloud networks has enabled connectivity of both traditional networked elements and new devices from all walks of life, thereby forming the Internet of Things (IoT). In an IoT setting, improving and scaling network components as well as reducing cost is essential to sustain exponential growth. In this domain, software-defined networking (SDN) is revolutionizing the network infrastructure with a new paradigm. SDN splits the control/routing logic from the data transfer/forwarding. This splitting causes many issues in SDN, such as vulnerabilities of DDoS attacks. Many solutions (including blockchain based) have been proposed to overcome these problems. In this work, we offer a blockchain-based solution that is provided in redundant SDN (load-balanced) to service millions of IoT devices. Blockchain is considered as tamper-proof and impossible to corrupt due to the replication of the ledger and consensus for verification and addition to the ledger. Therefore, it is a perfect fit for SDN in IoT Networks. Blockchain technology provides everyone with a working proof of decentralized trust. The experimental results show gain and efficiency with respect to the accuracy, update process, and bandwidth utilization.
10.3SPDec 28, 2019
Short-Term Load Forecasting Using AMI DataHaris Mansoor, Sarwan Ali, Imdadullah Khan et al.
Accurate short-term load forecasting is essential for the efficient operation of the power sector. Forecasting load at a fine granularity such as hourly loads of individual households is challenging due to higher volatility and inherent stochasticity. At the aggregate levels, such as monthly load at a grid, the uncertainties and fluctuations are averaged out; hence predicting load is more straightforward. This paper proposes a method called Forecasting using Matrix Factorization (\textsc{fmf}) for short-term load forecasting (\textsc{stlf}). \textsc{fmf} only utilizes historical data from consumers' smart meters to forecast future loads (does not use any non-calendar attributes, consumers' demographics or activity patterns information, etc.) and can be applied to any locality. A prominent feature of \textsc{fmf} is that it works at any level of user-specified granularity, both in the temporal (from a single hour to days) and spatial dimensions (a single household to groups of consumers). We empirically evaluate \textsc{fmf} on three benchmark datasets and demonstrate that it significantly outperforms the state-of-the-art methods in terms of load forecasting. The computational complexity of \textsc{fmf} is also substantially less than known methods for \textsc{stlf} such as long short-term memory neural networks, random forest, support vector machines, and regression trees.
17.0CRDec 27, 2019
Detecting DDoS Attack on SDN Due to Vulnerabilities in OpenFlowSarwan Ali, Maria Khalid Alvi, Safi Faizullah et al.
Software Defined Networking (SDN) is a network paradigm shift that facilitates comprehensive network programmability to cope with emerging new technologies such as cloud computing and big data. SDN facilitates simplified and centralized network management enabling it to operate in dynamic scenarios. Further, SDN uses the OpenFlow protocol for communication between the controller and its switches. The OpenFlow creates vulnerabilities for network attacks especially Distributed Denial of Service (DDoS). DDoS attacks are launched from the compromised hosts connected to the SDN switches. In this paper, we introduce a time- and space-efficient solution for the identification of these compromised hosts. Our solution consumes less computational resources and space and does not require any special equipment.
2.4CLDec 27, 2019
A Multi-cascaded Model with Data Augmentation for Enhanced Paraphrase Detection in Short TextsMuhammad Haroon Shakeel, Asim Karim, Imdadullah Khan
Paraphrase detection is an important task in text analytics with numerous applications such as plagiarism detection, duplicate question identification, and enhanced customer support helpdesks. Deep models have been proposed for representing and classifying paraphrases. These models, however, require large quantities of human-labeled data, which is expensive to obtain. In this work, we present a data augmentation strategy and a multi-cascaded model for improved paraphrase detection in short texts. Our data augmentation strategy considers the notions of paraphrases and non-paraphrases as binary relations over the set of texts. Subsequently, it uses graph theoretic concepts to efficiently generate additional paraphrase and non-paraphrase pairs in a sound manner. Our multi-cascaded model employs three supervised feature learners (cascades) based on CNN and LSTM networks with and without soft-attention. The learned features, together with hand-crafted linguistic features, are then forwarded to a discriminator network for final classification. Our model is both wide and deep and provides greater robustness across clean and noisy short texts. We evaluate our approach on three benchmark datasets and show that it produces a comparable or state-of-the-art performance on all three.
6.6LGDec 27, 2019
Efficient Data Analytics on Augmented Similarity TripletsSarwan Ali, Muhammad Ahmad, Umair ul Hassan et al.
Data analysis require a pairwise proximity measure over objects. Recent work has extended this to situations where the distance information between objects is given as comparison results of distances between three objects (triplets). Humans find the comparison tasks much easier than the exact distance computation and such data can be easily obtained in big quantity via crowd-sourcing. In this work, we propose triplets augmentation, an efficient method to extend the triplets data by inferring the hidden implicit information form the existing data. Triplets augmentation improves the quality of kernel-based and kernel-free data analytics. We also propose a novel set of algorithms for common data analysis tasks based on triplets. These methods work directly with triplets and avoid kernel evaluations, thus are scalable to big data. We demonstrate that our methods outperform the current best-known techniques and are robust to noisy data.
A Multi-cascaded Deep Model for Bilingual SMS ClassificationMuhammad Haroon Shakeel, Asim Karim, Imdadullah Khan
Most studies on text classification are focused on the English language. However, short texts such as SMS are influenced by regional languages. This makes the automatic text classification task challenging due to the multilingual, informal, and noisy nature of language in the text. In this work, we propose a novel multi-cascaded deep learning model called McM for bilingual SMS classification. McM exploits $n$-gram level information as well as long-term dependencies of text for learning. Our approach aims to learn a model without any code-switching indication, lexical normalization, language translation, or language transliteration. The model relies entirely upon the text as no external knowledge base is utilized for learning. For this purpose, a 12 class bilingual text dataset is developed from SMS feedbacks of citizens on public services containing mixed Roman Urdu and English languages. Our model achieves high accuracy for classification on this dataset and outperforms the previous model for multilingual text classification, highlighting language independence of McM.