Shiqi Zhang

Rubin Zhao, Yang Liu, Shiqi Zhang et al.

Neurons, with their elongated, tree-like dendritic and axonal structures, enable efficient signal integration and long-range communication across brain regions. By reconstructing individual neurons' morphology, we can gain valuable insights into brain connectivity, revealing the structure basis of cognition, movement, and perception. Despite the accumulation of extensive 3D microscopic imaging data, progress has been considerably hindered by the absence of automated tools to streamline this process. Here we introduce NeuroFly, a validated framework for large-scale automatic single neuron reconstruction. This framework breaks down the process into three distinct stages: segmentation, connection, and proofreading. In the segmentation stage, we perform automatic segmentation followed by skeletonization to generate over-segmented neuronal fragments without branches. During the connection stage, we use a 3D image-based path following approach to extend each fragment and connect it with other fragments of the same neuron. Finally, human annotators are required only to proofread the few unresolved positions. The first two stages of our process are clearly defined computer vision problems, and we have trained robust baseline models to solve them. We validated NeuroFly's efficiency using in-house datasets that include a variety of challenging scenarios, such as dense arborizations, weak axons, images with contamination. We will release the datasets along with a suite of visualization and annotation tools for better reproducibility. Our goal is to foster collaboration among researchers to address the neuron reconstruction challenge, ultimately accelerating advancements in neuroscience research. The dataset and code are available at https://github.com/beanli161514/neurofly

Zhigen Zhao, Shuo Cheng, Yan Ding et al.

Task and Motion Planning (TAMP) integrates high-level task planning and low-level motion planning to equip robots with the autonomy to effectively reason over long-horizon, dynamic tasks. Optimization-based TAMP focuses on hybrid optimization approaches that define goal conditions via objective functions and are capable of handling open-ended goals, robotic dynamics, and physical interaction between the robot and the environment. Therefore, optimization-based TAMP is particularly suited to solve highly complex, contact-rich locomotion and manipulation problems. This survey provides a comprehensive review on optimization-based TAMP, covering (i) planning domain representations, including action description languages and temporal logic, (ii) individual solution strategies for components of TAMP, including AI planning and trajectory optimization (TO), and (iii) the dynamic interplay between logic-based task planning and model-based TO. A particular focus of this survey is to highlight the algorithm structures to efficiently solve TAMP, especially hierarchical and distributed approaches. Additionally, the survey emphasizes the synergy between the classical methods and contemporary learning-based innovations such as large language models. Furthermore, the future research directions for TAMP is discussed in this survey, highlighting both algorithmic and application-specific challenges.

Yohei Hayamizu, David DeFazio, Hrudayangam Mehta et al.

Assistive robotics is an important subarea of robotics that focuses on the well-being of people with disabilities. A robotic guide dog is an assistive quadruped robot that helps visually impaired people in obstacle avoidance and navigation. Enabling language capabilities for robotic guide dogs goes beyond naively adding an existing dialog system onto a mobile robot. The novel challenges include grounding language in the dynamically changing environment and improving spatial awareness for the human handler. To address those challenges, we develop a novel dialog system for robotic guide dogs that uses LLMs to verbalize both navigational plans and scenes. The goal is to enable verbal communication for collaborative decision-making within the handler-robot team. In experiments, we conducted a human study to evaluate different verbalization strategies and a simulation study to assess the efficiency and accuracy in navigation tasks.