Physics-informed neural networks (PINNs) are known to suffer from optimization difficulty. In this work, we reveal the connection between the optimization difficulty of PINNs and activation functions. Specifically, we show that PINNs exhibit high sensitivity to activation functions when solving PDEs with distinct properties. Existing works usually choose activation functions by inefficient trial-and-error. To avoid the inefficient manual selection and to alleviate the optimization difficulty of PINNs, we introduce adaptive activation functions to search for the optimal function when solving different problems. We compare different adaptive activation functions and discuss their limitations in the context of PINNs. Furthermore, we propose to tailor the idea of learning combinations of candidate activation functions to the PINNs optimization, which has a higher requirement for the smoothness and diversity on learned functions. This is achieved by removing activation functions which cannot provide higher-order derivatives from the candidate set and incorporating elementary functions with different properties according to our prior knowledge about the PDE at hand. We further enhance the search space with adaptive slopes. The proposed adaptive activation function can be used to solve different PDE systems in an interpretable way. Its effectiveness is demonstrated on a series of benchmarks. Code is available at https://github.com/LeapLabTHU/AdaAFforPINNs.
Deep neural operators can learn nonlinear mappings between infinite-dimensional function spaces via deep neural networks. As promising surrogate solvers of partial differential equations (PDEs) for real-time prediction, deep neural operators such as deep operator networks (DeepONets) provide a new simulation paradigm in science and engineering. Pure data-driven neural operators and deep learning models, in general, are usually limited to interpolation scenarios, where new predictions utilize inputs within the support of the training set. However, in the inference stage of real-world applications, the input may lie outside the support, i.e., extrapolation is required, which may result to large errors and unavoidable failure of deep learning models. Here, we address this challenge of extrapolation for deep neural operators. First, we systematically investigate the extrapolation behavior of DeepONets by quantifying the extrapolation complexity via the 2-Wasserstein distance between two function spaces and propose a new behavior of bias-variance trade-off for extrapolation with respect to model capacity. Subsequently, we develop a complete workflow, including extrapolation determination, and we propose five reliable learning methods that guarantee a safe prediction under extrapolation by requiring additional information -- the governing PDEs of the system or sparse new observations. The proposed methods are based on either fine-tuning a pre-trained DeepONet or multifidelity learning. We demonstrate the effectiveness of the proposed framework for various types of parametric PDEs. Our systematic comparisons provide practical guidelines for selecting a proper extrapolation method depending on the available information, desired accuracy, and required inference speed.
While significant progress has been made on Physics-Informed Neural Networks (PINNs), a comprehensive comparison of these methods across a wide range of Partial Differential Equations (PDEs) is still lacking. This study introduces PINNacle, a benchmarking tool designed to fill this gap. PINNacle provides a diverse dataset, comprising over 20 distinct PDEs from various domains, including heat conduction, fluid dynamics, biology, and electromagnetics. These PDEs encapsulate key challenges inherent to real-world problems, such as complex geometry, multi-scale phenomena, nonlinearity, and high dimensionality. PINNacle also offers a user-friendly toolbox, incorporating about 10 state-of-the-art PINN methods for systematic evaluation and comparison. We have conducted extensive experiments with these methods, offering insights into their strengths and weaknesses. In addition to providing a standardized means of assessing performance, PINNacle also offers an in-depth analysis to guide future research, particularly in areas such as domain decomposition methods and loss reweighting for handling multi-scale problems and complex geometry. To the best of our knowledge, it is the largest benchmark with a diverse and comprehensive evaluation that will undoubtedly foster further research in PINNs.
The impressive capability and versatility of large language models (LLMs) have aroused increasing attention in automatic speech recognition (ASR), with several pioneering studies attempting to build integrated ASR models by connecting a speech encoder with an LLM. This paper presents a comparative study of three commonly used structures as connectors, including fully connected layers, multi-head cross-attention, and Q-Former. Speech encoders from the Whisper model series as well as LLMs from the Vicuna model series with different model sizes were studied. Experiments were performed on the commonly used LibriSpeech, Common Voice, and GigaSpeech datasets, where the LLMs with Q-Formers demonstrated consistent and considerable word error rate (WER) reductions over LLMs with other connector structures. Q-Former-based LLMs can generalise well to out-of-domain datasets, where 12% relative WER reductions over the Whisper baseline ASR model were achieved on the Eval2000 test set without using any in-domain training data from Switchboard. Moreover, a novel segment-level Q-Former is proposed to enable LLMs to recognise speech segments with a duration exceeding the limitation of the encoders, which results in 17% relative WER reductions over other connector structures on 90-second-long speech data.
We introduce Disk2Planet, a machine learning-based tool to infer key parameters in disk-planet systems from observed protoplanetary disk structures. Disk2Planet takes as input the disk structures in the form of two-dimensional density and velocity maps, and outputs disk and planet properties, that is, the Shakura--Sunyaev viscosity, the disk aspect ratio, the planet--star mass ratio, and the planet's radius and azimuth. We integrate the Covariance Matrix Adaptation Evolution Strategy (CMA--ES), an evolutionary algorithm tailored for complex optimization problems, and the Protoplanetary Disk Operator Network (PPDONet), a neural network designed to predict solutions of disk--planet interactions. Our tool is fully automated and can retrieve parameters in one system in three minutes on an Nvidia A100 graphics processing unit. We empirically demonstrate that our tool achieves percent-level or higher accuracy, and is able to handle missing data and unknown levels of noise.
Neural operators have been applied in various scientific fields, such as solving parametric partial differential equations, dynamical systems with control, and inverse problems. However, challenges arise when dealing with input functions that exhibit heterogeneous properties, requiring multiple sensors to handle functions with minimal regularity. To address this issue, discretization-invariant neural operators have been used, allowing the sampling of diverse input functions with different sensor locations. However, existing frameworks still require an equal number of sensors for all functions. In our study, we propose a novel distributed approach to further relax the discretization requirements and solve the heterogeneous dataset challenges. Our method involves partitioning the input function space and processing individual input functions using independent and separate neural networks. A centralized neural network is used to handle shared information across all output functions. This distributed methodology reduces the number of gradient descent back-propagation steps, improving efficiency while maintaining accuracy. We demonstrate that the corresponding neural network is a universal approximator of continuous nonlinear operators and present four numerical examples to validate its performance.
Physics-informed neural networks (PINNs) have shown to be an effective tool for solving forward and inverse problems of partial differential equations (PDEs). PINNs embed the PDEs into the loss of the neural network, and this PDE loss is evaluated at a set of scattered residual points. The distribution of these points are highly important to the performance of PINNs. However, in the existing studies on PINNs, only a few simple residual point sampling methods have mainly been used. Here, we present a comprehensive study of two categories of sampling: non-adaptive uniform sampling and adaptive nonuniform sampling. We consider six uniform sampling, including (1) equispaced uniform grid, (2) uniformly random sampling, (3) Latin hypercube sampling, (4) Halton sequence, (5) Hammersley sequence, and (6) Sobol sequence. We also consider a resampling strategy for uniform sampling. To improve the sampling efficiency and the accuracy of PINNs, we propose two new residual-based adaptive sampling methods: residual-based adaptive distribution (RAD) and residual-based adaptive refinement with distribution (RAR-D), which dynamically improve the distribution of residual points based on the PDE residuals during training. Hence, we have considered a total of 10 different sampling methods, including six non-adaptive uniform sampling, uniform sampling with resampling, two proposed adaptive sampling, and an existing adaptive sampling. We extensively tested the performance of these sampling methods for four forward problems and two inverse problems in many setups. Our numerical results presented in this study are summarized from more than 6000 simulations of PINNs. We show that the proposed adaptive sampling methods of RAD and RAR-D significantly improve the accuracy of PINNs with fewer residual points. The results obtained in this study can also be used as a practical guideline in choosing sampling methods.
Computational fluid dynamics (CFD) has become an essential tool for predicting fire behavior, yet maintaining both efficiency and accuracy remains challenging. A major source of computational cost in fire simulations is the modeling of radiation transfer, which is usually the dominant heat transfer mechanism in fires. Solving the high-dimensional radiative transfer equation (RTE) with traditional numerical methods can be a performance bottleneck. Here, we present a machine learning framework based on Fourier-enhanced multiple-input neural operators (Fourier-MIONet) as an efficient alternative to direct numerical integration of the RTE. We first investigate the performance of neural operator architectures for a small-scale 2D pool fire and find that Fourier-MIONet provides the most accurate radiative solution predictions. The approach is then extended to 3D CFD fire simulations, where the computational mesh is locally refined across multiple levels. In these high-resolution settings, monolithic surrogate models for direct field-to-field mapping become difficult to train and computationally inefficient. To address this issue, a nested Fourier-MIONet is proposed to predict radiation solutions across multiple mesh-refinement levels. We validate the approach on 3D McCaffrey pool fires simulated with FireFOAM, including fixed fire sizes and a unified model trained over a continuous range of heat release rates (HRRs). The proposed method achieves global relative errors of 2-4% for 3D varying-HRR scenarios while providing faster inference than the estimated cost of one finite-volume radiation solve in FireFOAM for the 16-solid-angle case. With fast and accurate inference, the surrogate makes higher-fidelity radiation treatments practical and enables the incorporation of more spectrally resolved radiation models into CFD fire simulations for engineering applications.
Speech self-supervised pre-training can effectively improve the performance of downstream tasks. However, previous self-supervised learning (SSL) methods for speech, such as HuBERT and BEST-RQ, focus on utilizing non-causal encoders with bidirectional context, and lack sufficient support for downstream streaming models. To address this issue, we introduce the next token prediction based speech pre-training method with random-projection quantizer (NEST-RQ). NEST-RQ employs causal encoders with only left context and uses next token prediction (NTP) as the training task. On the large-scale dataset, compared to BEST-RQ, the proposed NEST-RQ achieves comparable performance on non-streaming automatic speech recognition (ASR) and better performance on streaming ASR. We also conduct analytical experiments in terms of the future context size of streaming ASR, the codebook quality of SSL and the model size of the encoder. In summary, the paper demonstrates the feasibility of the NTP in speech SSL and provides empirical evidence and insights for speech SSL research.
Recent advances in generative modeling -- particularly diffusion models and flow matching -- have achieved remarkable success in synthesizing discrete data such as images and videos. However, adapting these models to physical applications remains challenging, as the quantities of interest are continuous functions governed by complex physical laws. Here, we introduce $\textbf{FunDiff}$, a novel framework for generative modeling in function spaces. FunDiff combines a latent diffusion process with a function autoencoder architecture to handle input functions with varying discretizations, generate continuous functions evaluable at arbitrary locations, and seamlessly incorporate physical priors. These priors are enforced through architectural constraints or physics-informed loss functions, ensuring that generated samples satisfy fundamental physical laws. We theoretically establish minimax optimality guarantees for density estimation in function spaces, showing that diffusion-based estimators achieve optimal convergence rates under suitable regularity conditions. We demonstrate the practical effectiveness of FunDiff across diverse applications in fluid dynamics and solid mechanics. Empirical results show that our method generates physically consistent samples with high fidelity to the target distribution and exhibits robustness to noisy and low-resolution data. Code and datasets are publicly available at https://github.com/sifanexisted/fundiff.
We develop a tool, which we name Protoplanetary Disk Operator Network (PPDONet), that can predict the solution of disk-planet interactions in protoplanetary disks in real-time. We base our tool on Deep Operator Networks (DeepONets), a class of neural networks capable of learning non-linear operators to represent deterministic and stochastic differential equations. With PPDONet we map three scalar parameters in a disk-planet system -- the Shakura \& Sunyaev viscosity $α$, the disk aspect ratio $h_\mathrm{0}$, and the planet-star mass ratio $q$ -- to steady-state solutions of the disk surface density, radial velocity, and azimuthal velocity. We demonstrate the accuracy of the PPDONet solutions using a comprehensive set of tests. Our tool is able to predict the outcome of disk-planet interaction for one system in less than a second on a laptop. A public implementation of PPDONet is available at \url{https://github.com/smao-astro/PPDONet}.
We propose a novel fine-tuning method to achieve multi-operator learning through training a distributed neural operator with diverse function data and then zero-shot fine-tuning the neural network using physics-informed losses for downstream tasks. Operator learning effectively approximates solution operators for PDEs and various PDE-related problems, yet it often struggles to generalize to new tasks. To address this, we investigate fine-tuning a pretrained model, while carefully selecting an initialization that enables rapid adaptation to new tasks with minimal data. Our approach combines distributed learning to integrate data from various operators in pre-training, while physics-informed methods enable zero-shot fine-tuning, minimizing the reliance on downstream data. We investigate standard fine-tuning and Low-Rank Adaptation fine-tuning, applying both to train complex nonlinear target operators that are difficult to learn only using random initialization. Through comprehensive numerical examples, we demonstrate the advantages of our approach, showcasing significant improvements in accuracy. Our findings provide a robust framework for advancing multi-operator learning and highlight the potential of transfer learning techniques in this domain.
In this work, we develop a method for uncertainty quantification in deep operator networks (DeepONets) using predictive uncertainty estimates calibrated to model errors observed during training. The uncertainty framework operates using a single network, in contrast to existing ensemble approaches, and introduces minimal overhead during training and inference. We also introduce an optimized implementation for DeepONet inference (reducing evaluation times by a factor of five) to provide models well-suited for real-time applications. We evaluate the uncertainty-equipped models on a series of partial differential equation (PDE) problems, and show that the model predictions are unbiased, non-skewed, and accurately reproduce solutions to the PDEs. To assess how well the models generalize, we evaluate the network predictions and uncertainty estimates on in-distribution and out-of-distribution test datasets. We find the predictive uncertainties accurately reflect the observed model errors over a range of problems with varying complexity; simpler out-of-distribution examples are assigned low uncertainty estimates, consistent with the observed errors, while more complex out-of-distribution examples are properly assigned higher uncertainties. We also provide a statistical analysis of the predictive uncertainties and verify that these estimates are well-aligned with the observed error distributions at the tail-end of training. Finally, we demonstrate how predictive uncertainties can be used within an active learning framework to yield improvements in accuracy and data-efficiency for outer-loop optimization procedures.
Effective interactive tool use requires agents to master Tool Integrated Reasoning (TIR): a complex process involving multi-turn planning and long-context dialogue management. To train agents for this dynamic process, particularly in multi-modal contexts, we introduce a sandbox environment for reinforcement learning (RL) that supports interleaved speech-text rollouts. Our core strategy, Turn-level Adjudicated Reinforcement Learning (TARL), addresses the challenge of credit assignment in long-horizon tasks by employing a Large Language Model (LLM) as a judge to provide turn-level evaluation. To enhance exploration, we integrate a mixed-task training curriculum with mathematical reasoning problems. This unified approach boosts the task pass rate on the text-based $τ$-bench by over 6% compared to strong RL baselines. Crucially, we demonstrate our framework's suitability for fine-tuning a multi-modal foundation model for agentic tasks. By training a base multi-modal LLM on interleaved speech-text rollouts, we equip it with tool-use abilities, paving the way for more natural, voice-driven interactive agents.
Water quality is foundational to environmental sustainability, ecosystem resilience, and public health. Deep learning offers transformative potential for large-scale water quality prediction and scientific insights generation. However, their widespread adoption in high-stakes operational decision-making, such as pollution mitigation and equitable resource allocation, is prevented by unresolved trustworthiness challenges, including performance disparity, robustness, uncertainty, interpretability, generalizability, and reproducibility. In this work, we present a multi-dimensional, quantitative evaluation of trustworthiness benchmarking three state-of-the-art deep learning architectures: recurrent (LSTM), operator-learning (DeepONet), and transformer-based (Informer), trained on 37 years of data from 482 U.S. basins to predict 20 water quality variables. Our investigation reveals systematic performance disparities tied to process complexity, data availability, and basin heterogeneity. Management-critical variables remain the least predictable and most uncertain. Robustness tests reveal pronounced sensitivity to outliers and corrupted targets; notably, the architecture with the strongest baseline performance (LSTM) proves most vulnerable under data corruption. Attribution analyses align for simple variables but diverge for nutrients, underscoring the need for multi-method interpretability. Spatial generalization to ungauged basins remains poor across all models. This work serves as a timely call to action for advancing trustworthy data-driven methods for water resources management and provides a pathway to offering critical insights for researchers, decision-makers, and practitioners seeking to leverage artificial intelligence (AI) responsibly in environmental management.
We develop a methodology that utilizes deep learning to simultaneously solve and estimate canonical continuous-time general equilibrium models in financial economics. We illustrate our method in two examples: (1) industrial dynamics of firms and (2) macroeconomic models with financial frictions. Through these applications, we illustrate the advantages of our method: generality, simultaneous solution and estimation, leveraging the state-of-art machine-learning techniques, and handling large state space. The method is versatile and can be applied to a vast variety of problems.
As an emerging paradigm in scientific machine learning, neural operators aim to learn operators, via neural networks, that map between infinite-dimensional function spaces. Several neural operators have been recently developed. However, all the existing neural operators are only designed to learn operators defined on a single Banach space, i.e., the input of the operator is a single function. Here, for the first time, we study the operator regression via neural networks for multiple-input operators defined on the product of Banach spaces. We first prove a universal approximation theorem of continuous multiple-input operators. We also provide detailed theoretical analysis including the approximation error, which provides a guidance of the design of the network architecture. Based on our theory and a low-rank approximation, we propose a novel neural operator, MIONet, to learn multiple-input operators. MIONet consists of several branch nets for encoding the input functions and a trunk net for encoding the domain of the output function. We demonstrate that MIONet can learn solution operators involving systems governed by ordinary and partial differential equations. In our computational examples, we also show that we can endow MIONet with prior knowledge of the underlying system, such as linearity and periodicity, to further improve the accuracy.
Mitchell Daneker, Zhen Zhang, George Em Karniadakis et al.
The dynamics of systems biological processes are usually modeled by a system of ordinary differential equations (ODEs) with many unknown parameters that need to be inferred from noisy and sparse measurements. Here, we introduce systems-biology informed neural networks for parameter estimation by incorporating the system of ODEs into the neural networks. To complete the workflow of system identification, we also describe structural and practical identifiability analysis to analyze the identifiability of parameters. We use the ultridian endocrine model for glucose-insulin interaction as the example to demonstrate all these methods and their implementation.
Deep learning has been shown to be an effective tool in solving partial differential equations (PDEs) through physics-informed neural networks (PINNs). PINNs embed the PDE residual into the loss function of the neural network, and have been successfully employed to solve diverse forward and inverse PDE problems. However, one disadvantage of the first generation of PINNs is that they usually have limited accuracy even with many training points. Here, we propose a new method, gradient-enhanced physics-informed neural networks (gPINNs), for improving the accuracy and training efficiency of PINNs. gPINNs leverage gradient information of the PDE residual and embed the gradient into the loss function. We tested gPINNs extensively and demonstrated the effectiveness of gPINNs in both forward and inverse PDE problems. Our numerical results show that gPINN performs better than PINN with fewer training points. Furthermore, we combined gPINN with the method of residual-based adaptive refinement (RAR), a method for improving the distribution of training points adaptively during training, to further improve the performance of gPINN, especially in PDEs with solutions that have steep gradients.
Learning and solving governing equations of a physical system, represented by partial differential equations (PDEs), from data is a central challenge in a variety of areas of science and engineering. Traditional numerical methods for solving PDEs can be computationally expensive for complex systems and require the complete PDEs of the physical system. On the other hand, current data-driven machine learning methods require a large amount of data to learn a surrogate model of the PDE solution operator, which could be impractical. Here, we propose the first solution operator learning method that only requires one PDE solution, i.e., one-shot learning. By leveraging the principle of locality of PDEs, we consider small local domains instead of the entire computational domain and define a local solution operator. The local solution operator is then trained using a neural network, and utilized to predict the solution of a new input function via mesh-based fixed-point iteration (FPI), meshfree local-solution-operator informed neural network (LOINN) or local-solution-operator informed neural network with correction (cLOINN). We test our method on diverse PDEs, including linear or nonlinear PDEs, PDEs defined on complex geometries, and PDE systems, demonstrating the effectiveness and generalization capabilities of our method across these varied scenarios.
Deep learning has achieved remarkable success in diverse applications; however, its use in solving partial differential equations (PDEs) has emerged only recently. Here, we present an overview of physics-informed neural networks (PINNs), which embed a PDE into the loss of the neural network using automatic differentiation. The PINN algorithm is simple, and it can be applied to different types of PDEs, including integro-differential equations, fractional PDEs, and stochastic PDEs. Moreover, from the implementation point of view, PINNs solve inverse problems as easily as forward problems. We propose a new residual-based adaptive refinement (RAR) method to improve the training efficiency of PINNs. For pedagogical reasons, we compare the PINN algorithm to a standard finite element method. We also present a Python library for PINNs, DeepXDE, which is designed to serve both as an education tool to be used in the classroom as well as a research tool for solving problems in computational science and engineering. Specifically, DeepXDE can solve forward problems given initial and boundary conditions, as well as inverse problems given some extra measurements. DeepXDE supports complex-geometry domains based on the technique of constructive solid geometry, and enables the user code to be compact, resembling closely the mathematical formulation. We introduce the usage of DeepXDE and its customizability, and we also demonstrate the capability of PINNs and the user-friendliness of DeepXDE for five different examples. More broadly, DeepXDE contributes to the more rapid development of the emerging Scientific Machine Learning field.
The accuracy of deep learning, i.e., deep neural networks, can be characterized by dividing the total error into three main types: approximation error, optimization error, and generalization error. Whereas there are some satisfactory answers to the problems of approximation and optimization, much less is known about the theory of generalization. Most existing theoretical works for generalization fail to explain the performance of neural networks in practice. To derive a meaningful bound, we study the generalization error of neural networks for classification problems in terms of data distribution and neural network smoothness. We introduce the cover complexity (CC) to measure the difficulty of learning a data set and the inverse of the modulus of continuity to quantify neural network smoothness. A quantitative bound for expected accuracy/error is derived by considering both the CC and neural network smoothness. Although most of the analysis is general and not specific to neural networks, we validate our theoretical assumptions and results numerically for neural networks by several data sets of images. The numerical results confirm that the expected error of trained networks scaled with the square root of the number of classes has a linear relationship with respect to the CC. We also observe a clear consistency between test loss and neural network smoothness during the training process. In addition, we demonstrate empirically that the neural network smoothness decreases when the network size increases whereas the smoothness is insensitive to training dataset size.
Physics-informed neural networks (PINNs) have recently emerged as an alternative way of solving partial differential equations (PDEs) without the need of building elaborate grids, instead, using a straightforward implementation. In particular, in addition to the deep neural network (DNN) for the solution, a second DNN is considered that represents the residual of the PDE. The residual is then combined with the mismatch in the given data of the solution in order to formulate the loss function. This framework is effective but is lacking uncertainty quantification of the solution due to the inherent randomness in the data or due to the approximation limitations of the DNN architecture. Here, we propose a new method with the objective of endowing the DNN with uncertainty quantification for both sources of uncertainty, i.e., the parametric uncertainty and the approximation uncertainty. We first account for the parametric uncertainty when the parameter in the differential equation is represented as a stochastic process. Multiple DNNs are designed to learn the modal functions of the arbitrary polynomial chaos (aPC) expansion of its solution by using stochastic data from sparse sensors. We can then make predictions from new sensor measurements very efficiently with the trained DNNs. Moreover, we employ dropout to correct the over-fitting and also to quantify the uncertainty of DNNs in approximating the modal functions. We then design an active learning strategy based on the dropout uncertainty to place new sensors in the domain to improve the predictions of DNNs. Several numerical tests are conducted for both the forward and the inverse problems to quantify the effectiveness of PINNs combined with uncertainty quantification. This NN-aPC new paradigm of physics-informed deep learning with uncertainty quantification can be readily applied to other types of stochastic PDEs in multi-dimensions.
Recent theoretical work has demonstrated that deep neural networks have superior performance over shallow networks, but their training is more difficult, e.g., they suffer from the vanishing gradient problem. This problem can be typically resolved by the rectified linear unit (ReLU) activation. However, here we show that even for such activation, deep and narrow neural networks (NNs) will converge to erroneous mean or median states of the target function depending on the loss with high probability. Deep and narrow NNs are encountered in solving partial differential equations with high-order derivatives. We demonstrate this collapse of such NNs both numerically and theoretically, and provide estimates of the probability of collapse. We also construct a diagram of a safe region for designing NNs that avoid the collapse to erroneous states. Finally, we examine different ways of initialization and normalization that may avoid the collapse problem. Asymmetric initializations may reduce the probability of collapse but do not totally eliminate it.