Aaron Thomas

Laurits Fredsgaard, Aaron Thomas, Michael Riis Andersen et al.

Autoregressive graph generators define likelihoods via a sequential construction process, but these likelihoods are only meaningful if they are consistent across all linearizations of the same graph. Segmented Eulerian Neighborhood Trails (SENT), a recent linearization method, converts graphs into sequences that can be perfectly decoded and efficiently processed by language models, but admit multiple equivalent linearizations of the same graph. We quantify violations in assigned negative log-likelihood (NLL) using the coefficient of variation across equivalent linearizations, which we call Linearization Uncertainty (LU). Training transformers under four linearization strategies on two datasets, we show that biased orderings achieve lower NLL on their native order but exhibit expected calibration error (ECE) two orders of magnitude higher under random permutation, indicating that these models have learned their training linearization rather than the underlying graph. On the molecular graph benchmark QM9, NLL for generated graphs is negatively correlated with molecular stability (AUC $=0.43$), while LU achieves AUC $=0.85$, suggesting that permutation-based evaluation provides a more reliable quality check for generated molecules. Code is available at https://github.com/lauritsf/linearization-uncertainty

Xinxin Liu, Aaron Thomas, Cheng Zhang et al.

Parameter-Efficient Fine-Tuning (PEFT) has gained prominence through low-rank adaptation methods like LoRA. In this paper, we focus on sparsity-based PEFT (SPEFT), which introduces trainable sparse adaptations to the weight matrices in the model, offering greater flexibility in selecting fine-tuned parameters compared to low-rank methods. We conduct the first systematic evaluation of salience metrics for SPEFT, inspired by zero-cost NAS proxies, and identify simple gradient-based metrics is reliable, and results are on par with the best alternatives, offering both computational efficiency and robust performance. Additionally, we compare static and dynamic masking strategies, finding that static masking, which predetermines non-zero entries before training, delivers efficiency without sacrificing performance, while dynamic masking offers no substantial benefits. Across NLP tasks, a simple gradient-based, static SPEFT consistently outperforms other fine-tuning methods for LLMs, providing a simple yet effective baseline for SPEFT. Our work challenges the notion that complexity is necessary for effective PEFT, while our open-source framework establishes a reproducible benchmark for future research, which is available at [https://github.com/0-ml/speft].