Xiang Wang

Zhiyuan Liu, Sihang Li, Yanchen Luo et al.

Language Models (LMs) have demonstrated impressive molecule understanding ability on various 1D text-related tasks. However, they inherently lack 2D graph perception - a critical ability of human professionals in comprehending molecules' topological structures. To bridge this gap, we propose MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter. MolCA enables an LM (e.g., Galactica) to understand both text- and graph-based molecular contents via the cross-modal projector. Specifically, the cross-modal projector is implemented as a Q-Former to connect a graph encoder's representation space and an LM's text space. Further, MolCA employs a uni-modal adapter (i.e., LoRA) for the LM's efficient adaptation to downstream tasks. Unlike previous studies that couple an LM with a graph encoder via cross-modal contrastive learning, MolCA retains the LM's ability of open-ended text generation and augments it with 2D graph information. To showcase its effectiveness, we extensively benchmark MolCA on tasks of molecule captioning, IUPAC name prediction, and molecule-text retrieval, on which MolCA significantly outperforms the baselines. Our codes and checkpoints can be found at https://github.com/acharkq/MolCA.

Yaorui Shi, An Zhang, Enzhi Zhang et al.

Predicting chemical reactions, a fundamental challenge in chemistry, involves forecasting the resulting products from a given reaction process. Conventional techniques, notably those employing Graph Neural Networks (GNNs), are often limited by insufficient training data and their inability to utilize textual information, undermining their applicability in real-world applications. In this work, we propose ReLM, a novel framework that leverages the chemical knowledge encoded in language models (LMs) to assist GNNs, thereby enhancing the accuracy of real-world chemical reaction predictions. To further enhance the model's robustness and interpretability, we incorporate the confidence score strategy, enabling the LMs to self-assess the reliability of their predictions. Our experimental results demonstrate that ReLM improves the performance of state-of-the-art GNN-based methods across various chemical reaction datasets, especially in out-of-distribution settings. Codes are available at https://github.com/syr-cn/ReLM.

Zhe Xu, Zhicai Wang, Junkang Wu et al.

Large Vision-Language Models (LVLMs) often suffer from object hallucination, making erroneous judgments about the presence of objects in images. We propose this primar- ily stems from spurious correlations arising when models strongly associate highly co-occurring objects during train- ing, leading to hallucinated objects influenced by visual con- text. Current benchmarks mainly focus on hallucination de- tection but lack a formal characterization and quantitative evaluation of spurious correlations in LVLMs. To address this, we introduce causal analysis into the object recognition scenario of LVLMs, establishing a Structural Causal Model (SCM). Utilizing the language of causality, we formally de- fine spurious correlations arising from co-occurrence bias. To quantify the influence induced by these spurious correla- tions, we develop Causal-HalBench, a benchmark specifically constructed with counterfactual samples and integrated with comprehensive causal metrics designed to assess model ro- bustness against spurious correlations. Concurrently, we pro- pose an extensible pipeline for the construction of these coun- terfactual samples, leveraging the capabilities of proprietary LVLMs and Text-to-Image (T2I) models for their genera- tion. Our evaluations on mainstream LVLMs using Causal- HalBench demonstrate these models exhibit susceptibility to spurious correlations, albeit to varying extents.

Xiang Bai, Hanchen Wang, Liya Ma et al.

Artificial intelligence (AI) provides a promising substitution for streamlining COVID-19 diagnoses. However, concerns surrounding security and trustworthiness impede the collection of large-scale representative medical data, posing a considerable challenge for training a well-generalised model in clinical practices. To address this, we launch the Unified CT-COVID AI Diagnostic Initiative (UCADI), where the AI model can be distributedly trained and independently executed at each host institution under a federated learning framework (FL) without data sharing. Here we show that our FL model outperformed all the local models by a large yield (test sensitivity /specificity in China: 0.973/0.951, in the UK: 0.730/0.942), achieving comparable performance with a panel of professional radiologists. We further evaluated the model on the hold-out (collected from another two hospitals leaving out the FL) and heterogeneous (acquired with contrast materials) data, provided visual explanations for decisions made by the model, and analysed the trade-offs between the model performance and the communication costs in the federated training process. Our study is based on 9,573 chest computed tomography scans (CTs) from 3,336 patients collected from 23 hospitals located in China and the UK. Collectively, our work advanced the prospects of utilising federated learning for privacy-preserving AI in digital health.

Rohith Kuditipudi, Xiang Wang, Holden Lee et al.

Mode connectivity is a surprising phenomenon in the loss landscape of deep nets. Optima -- at least those discovered by gradient-based optimization -- turn out to be connected by simple paths on which the loss function is almost constant. Often, these paths can be chosen to be piece-wise linear, with as few as two segments. We give mathematical explanations for this phenomenon, assuming generic properties (such as dropout stability and noise stability) of well-trained deep nets, which have previously been identified as part of understanding the generalization properties of deep nets. Our explanation holds for realistic multilayer nets, and experiments are presented to verify the theory.