Jianhao Shen

Jianhao Shen, Chenguang Wang, Ye Yuan et al.

This paper presents a parameter-lite transfer learning approach of pretrained language models (LM) for knowledge graph (KG) completion. Instead of finetuning, which modifies all LM parameters, we only tune a few new parameters while keeping the original LM parameters fixed. We establish this via reformulating KG completion as a "fill-in-the-blank" task, and introducing a parameter-lite encoder on top of the original LMs. We show that, by tuning far fewer parameters than finetuning, LMs transfer non-trivially to most tasks and reach competitiveness with prior state-of-the-art approaches. For instance, we outperform the fully finetuning approaches on a KG completion benchmark by tuning only 1% of the parameters. The code and datasets are available at \url{https://github.com/yuanyehome/PALT}.

Wei Ju, Zheng Fang, Yiyang Gu et al. · uw

Graph representation learning aims to effectively encode high-dimensional sparse graph-structured data into low-dimensional dense vectors, which is a fundamental task that has been widely studied in a range of fields, including machine learning and data mining. Classic graph embedding methods follow the basic idea that the embedding vectors of interconnected nodes in the graph can still maintain a relatively close distance, thereby preserving the structural information between the nodes in the graph. However, this is sub-optimal due to: (i) traditional methods have limited model capacity which limits the learning performance; (ii) existing techniques typically rely on unsupervised learning strategies and fail to couple with the latest learning paradigms; (iii) representation learning and downstream tasks are dependent on each other which should be jointly enhanced. With the remarkable success of deep learning, deep graph representation learning has shown great potential and advantages over shallow (traditional) methods, there exist a large number of deep graph representation learning techniques have been proposed in the past decade, especially graph neural networks. In this survey, we conduct a comprehensive survey on current deep graph representation learning algorithms by proposing a new taxonomy of existing state-of-the-art literature. Specifically, we systematically summarize the essential components of graph representation learning and categorize existing approaches by the ways of graph neural network architectures and the most recent advanced learning paradigms. Moreover, this survey also provides the practical and promising applications of deep graph representation learning. Last but not least, we state new perspectives and suggest challenging directions which deserve further investigations in the future.

Jing Xiong, Jianhao Shen, Ye Yuan et al.

Automated theorem proving (ATP) has become an appealing domain for exploring the reasoning ability of the recent successful generative language models. However, current ATP benchmarks mainly focus on symbolic inference, but rarely involve the understanding of complex number combination reasoning. In this work, we propose TRIGO, an ATP benchmark that not only requires a model to reduce a trigonometric expression with step-by-step proofs but also evaluates a generative LM's reasoning ability on formulas and its capability to manipulate, group, and factor number terms. We gather trigonometric expressions and their reduced forms from the web, annotate the simplification process manually, and translate it into the Lean formal language system. We then automatically generate additional examples from the annotated samples to expand the dataset. Furthermore, we develop an automatic generator based on Lean-Gym to create dataset splits of varying difficulties and distributions in order to thoroughly analyze the model's generalization ability. Our extensive experiments show our proposed TRIGO poses a new challenge for advanced generative LM's including GPT-4 which is pre-trained on a considerable amount of open-source formal theorem-proving language data, and provide a new tool to study the generative LM's ability on both formal and mathematical reasoning.

Jianhao Shen, Chenguang Wang, Linyuan Gong et al.

The task of completing knowledge triplets has broad downstream applications. Both structural and semantic information plays an important role in knowledge graph completion. Unlike previous approaches that rely on either the structures or semantics of the knowledge graphs, we propose to jointly embed the semantics in the natural language description of the knowledge triplets with their structure information. Our method embeds knowledge graphs for the completion task via fine-tuning pre-trained language models with respect to a probabilistic structured loss, where the forward pass of the language models captures semantics and the loss reconstructs structures. Our extensive experiments on a variety of knowledge graph benchmarks have demonstrated the state-of-the-art performance of our method. We also show that our method can significantly improve the performance in a low-resource regime, thanks to the better use of semantics. The code and datasets are available at https://github.com/pkusjh/LASS.

Wei Ju, Junwei Yang, Meng Qu et al.

This paper studies semi-supervised graph classification, which is an important problem with various applications in social network analysis and bioinformatics. This problem is typically solved by using graph neural networks (GNNs), which yet rely on a large number of labeled graphs for training and are unable to leverage unlabeled graphs. We address the limitations by proposing the Kernel-based Graph Neural Network (KGNN). A KGNN consists of a GNN-based network as well as a kernel-based network parameterized by a memory network. The GNN-based network performs classification through learning graph representations to implicitly capture the similarity between query graphs and labeled graphs, while the kernel-based network uses graph kernels to explicitly compare each query graph with all the labeled graphs stored in a memory for prediction. The two networks are motivated from complementary perspectives, and thus combing them allows KGNN to use labeled graphs more effectively. We jointly train the two networks by maximizing their agreement on unlabeled graphs via posterior regularization, so that the unlabeled graphs serve as a bridge to let both networks mutually enhance each other. Experiments on a range of well-known benchmark datasets demonstrate that KGNN achieves impressive performance over competitive baselines.

Chengwu Liu, Jianhao Shen, Huajian Xin et al.

We present FIMO, an innovative dataset comprising formal mathematical problem statements sourced from the International Mathematical Olympiad (IMO) Shortlisted Problems. Designed to facilitate advanced automated theorem proving at the IMO level, FIMO is currently tailored for the Lean formal language. It comprises 149 formal problem statements, accompanied by both informal problem descriptions and their corresponding LaTeX-based informal proofs. Through initial experiments involving GPT-4, our findings underscore the existing limitations in current methodologies, indicating a substantial journey ahead before achieving satisfactory IMO-level automated theorem proving outcomes.

Chuanyang Zheng, Haiming Wang, Enze Xie et al.

Large Language Models (LLMs) present an intriguing avenue for exploration in the field of formal theorem proving. Nevertheless, their full potential, particularly concerning the mitigation of hallucinations and refinement through prover error messages, remains an area that has yet to be thoroughly investigated. To enhance the effectiveness of LLMs in the field, we introduce the Lyra, a new framework that employs two distinct correction mechanisms: Tool Correction (TC) and Conjecture Correction (CC). To implement Tool Correction in the post-processing of formal proofs, we leverage prior knowledge to utilize predefined prover tools (e.g., Sledgehammer) for guiding the replacement of incorrect tools. Tool Correction significantly contributes to mitigating hallucinations, thereby improving the overall accuracy of the proof. In addition, we introduce Conjecture Correction, an error feedback mechanism designed to interact with prover to refine formal proof conjectures with prover error messages. Compared to the previous refinement framework, the proposed Conjecture Correction refines generation with instruction but does not collect paired (generation, error & refinement) prompts. Our method has achieved state-of-the-art (SOTA) performance on both miniF2F validation (48.0% -> 55.3%) and test (45.5% -> 51.2%). We also present 3 IMO problems solved by Lyra. We believe Tool Correction (post-process for hallucination mitigation) and Conjecture Correction (subgoal adjustment from interaction with environment) could provide a promising avenue for future research in this field.

Qianying Liu, Wenyu Guan, Jianhao Shen et al.

Previous studies have introduced a weakly-supervised paradigm for solving math word problems requiring only the answer value annotation. While these methods search for correct value equation candidates as pseudo labels, they search among a narrow sub-space of the enormous equation space. To address this problem, we propose a novel search algorithm with combinatorial strategy \textbf{ComSearch}, which can compress the search space by excluding mathematically equivalent equations. The compression allows the searching algorithm to enumerate all possible equations and obtain high-quality data. We investigate the noise in the pseudo labels that hold wrong mathematical logic, which we refer to as the \textit{false-matching} problem, and propose a ranking model to denoise the pseudo labels. Our approach holds a flexible framework to utilize two existing supervised math word problem solvers to train pseudo labels, and both achieve state-of-the-art performance in the weak supervision task.

Chengwu Liu, Yichun Yin, Ye Yuan et al.

Most ATP benchmarks embed the final answer within the formal statement -- a convention we call "Easy Mode" -- a design that simplifies the task relative to what human competitors face and may lead to optimistic estimates of model capability. We call the stricter, more realistic setting "Hard Mode": the system must independently discover the answer before constructing a formal proof. To enable Hard Mode research, we make two contributions. First, we release MiniF2F-Hard and FIMO-Hard, expert-reannotated Hard Mode variants of two widely-used ATP benchmarks. Second, we introduce Discover And Prove (DAP), an agentic framework that uses LLM natural-language reasoning with explicit self-reflection to discover answers, then rewrites Hard Mode statements into Easy Mode ones for existing ATP provers. DAP sets the state of the art: on CombiBench it raises solved problems from 7 (previous SOTA, Pass@16) to 10; on PutnamBench it is the first system to formally prove 36 theorems in Hard Mode -- while simultaneously revealing that state-of-the-art LLMs exceed 80% answer accuracy on the same problems where formal provers manage under 10%, exposing a substantial gap that Hard Mode benchmarks are uniquely suited to measure.

Jianqiao Lu, Yingjia Wan, Zhengying Liu et al.

Autoformalization, the conversion of natural language mathematics into formal languages, offers significant potential for advancing mathematical reasoning. However, existing efforts are limited to formal languages with substantial online corpora and struggle to keep pace with rapidly evolving languages like Lean 4. To bridge this gap, we propose a new benchmark \textbf{Form}alization for \textbf{L}ean~\textbf{4} (\textbf{\name}) designed to evaluate the autoformalization capabilities of large language models (LLMs). This benchmark encompasses a comprehensive assessment of questions, answers, formal statements, and proofs. Additionally, we introduce a \textbf{P}rocess-\textbf{S}upervised \textbf{V}erifier (\textbf{PSV}) model that leverages the precise feedback from Lean 4 compilers to enhance autoformalization. Our experiments demonstrate that the PSV method improves autoformalization, enabling higher accuracy using less filtered training data. Furthermore, when fine-tuned with data containing detailed process information, PSV can leverage the data more effectively, leading to more significant improvements in autoformalization for Lean 4. Our dataset and code are available at \url{https://github.com/rookie-joe/PDA}.

Jianhao Shen, Ye Yuan, Srbuhi Mirzoyan et al.

We introduce a new challenge to test the STEM skills of neural models. The problems in the real world often require solutions, combining knowledge from STEM (science, technology, engineering, and math). Unlike existing datasets, our dataset requires the understanding of multimodal vision-language information of STEM. Our dataset features one of the largest and most comprehensive datasets for the challenge. It includes 448 skills and 1,073,146 questions spanning all STEM subjects. Compared to existing datasets that often focus on examining expert-level ability, our dataset includes fundamental skills and questions designed based on the K-12 curriculum. We also add state-of-the-art foundation models such as CLIP and GPT-3.5-Turbo to our benchmark. Results show that the recent model advances only help master a very limited number of lower grade-level skills (2.5% in the third grade) in our dataset. In fact, these models are still well below (averaging 54.7%) the performance of elementary students, not to mention near expert-level performance. To understand and increase the performance on our dataset, we teach the models on a training split of our dataset. Even though we observe improved performance, the model performance remains relatively low compared to average elementary students. To solve STEM problems, we will need novel algorithmic innovations from the community.

Ye Yuan, Kexin Tang, Jianhao Shen et al.

We present a new challenge to examine whether large language models understand social norms. In contrast to existing datasets, our dataset requires a fundamental understanding of social norms to solve. Our dataset features the largest set of social norm skills, consisting of 402 skills and 12,383 questions covering a wide set of social norms ranging from opinions and arguments to culture and laws. We design our dataset according to the K-12 curriculum. This enables the direct comparison of the social understanding of large language models to humans, more specifically, elementary students. While prior work generates nearly random accuracy on our benchmark, recent large language models such as GPT3.5-Turbo and LLaMA2-Chat are able to improve the performance significantly, only slightly below human performance. We then propose a multi-agent framework based on large language models to improve the models' ability to understand social norms. This method further improves large language models to be on par with humans. Given the increasing adoption of large language models in real-world applications, our finding is particularly important and presents a unique direction for future improvements.

Wei Ju, Zhengyang Mao, Siyu Yi et al.

This paper studies the problem of class-imbalanced graph classification, which aims at effectively classifying the graph categories in scenarios with imbalanced class distributions. While graph neural networks (GNNs) have achieved remarkable success, their modeling ability on imbalanced graph-structured data remains suboptimal, which typically leads to predictions biased towards the majority classes. On the other hand, existing class-imbalanced learning methods in vision may overlook the rich graph semantic substructures of the majority classes and excessively emphasize learning from the minority classes. To address these challenges, we propose a simple yet powerful approach called C$^3$GNN that integrates the idea of clustering into contrastive learning to enhance class-imbalanced graph classification. Technically, C$^3$GNN clusters graphs from each majority class into multiple subclasses, with sizes comparable to the minority class, mitigating class imbalance. It also employs the Mixup technique to generate synthetic samples, enriching the semantic diversity of each subclass. Furthermore, supervised contrastive learning is used to hierarchically learn effective graph representations, enabling the model to thoroughly explore semantic substructures in majority classes while avoiding excessive focus on minority classes. Extensive experiments on real-world graph benchmark datasets verify the superior performance of our proposed method against competitive baselines.

Jianhao Shen, Yichun Yin, Lin Li et al.

Math word problem (MWP) is a challenging and critical task in natural language processing. Many recent studies formalize MWP as a generation task and have adopted sequence-to-sequence models to transform problem descriptions to mathematical expressions. However, mathematical expressions are prone to minor mistakes while the generation objective does not explicitly handle such mistakes. To address this limitation, we devise a new ranking task for MWP and propose Generate & Rank, a multi-task framework based on a generative pre-trained language model. By joint training with generation and ranking, the model learns from its own mistakes and is able to distinguish between correct and incorrect expressions. Meanwhile, we perform tree-based disturbance specially designed for MWP and an online update to boost the ranker. We demonstrate the effectiveness of our proposed method on the benchmark and the results show that our method consistently outperforms baselines in all datasets. Particularly, in the classical Math23k, our method is 7% (78.4% $\rightarrow$ 85.4%) higher than the state-of-the-art.

Luchen Liu, Zequn Liu, Haoxian Wu et al.

Mortality prediction of diverse rare diseases using electronic health record (EHR) data is a crucial task for intelligent healthcare. However, data insufficiency and the clinical diversity of rare diseases make it hard for directly training deep learning models on individual disease data or all the data from different diseases. Mortality prediction for these patients with different diseases can be viewed as a multi-task learning problem with insufficient data and large task number. But the tasks with little training data also make it hard to train task-specific modules in multi-task learning models. To address the challenges of data insufficiency and task diversity, we propose an initialization-sharing multi-task learning method (Ada-Sit) which learns the parameter initialization for fast adaptation to dynamically measured similar tasks. We use Ada-Sit to train long short-term memory networks (LSTM) based prediction models on longitudinal EHR data. And experimental results demonstrate that the proposed model is effective for mortality prediction of diverse rare diseases.

Yikai Zhu, Jianhao Shen, Ming Zhang

In the task of factoid question answering over knowledge base, many questions have more than one plausible interpretation. Previous works on SimpleQuestions assume only one interpretation as the ground truth for each question, so they lack the ability to answer ambiguous questions correctly. In this paper, we present a new way to utilize the dataset that takes into account the existence of ambiguous questions. Then we introduce a simple and effective model which combines local knowledge subgraph with attention mechanism. Our experimental results show that our approach achieves outstanding performance in this task.

Luchen Liu, Jianhao Shen, Ming Zhang et al.

The availability of a large amount of electronic health records (EHR) provides huge opportunities to improve health care service by mining these data. One important application is clinical endpoint prediction, which aims to predict whether a disease, a symptom or an abnormal lab test will happen in the future according to patients' history records. This paper develops deep learning techniques for clinical endpoint prediction, which are effective in many practical applications. However, the problem is very challenging since patients' history records contain multiple heterogeneous temporal events such as lab tests, diagnosis, and drug administrations. The visiting patterns of different types of events vary significantly, and there exist complex nonlinear relationships between different events. In this paper, we propose a novel model for learning the joint representation of heterogeneous temporal events. The model adds a new gate to control the visiting rates of different events which effectively models the irregular patterns of different events and their nonlinear correlations. Experiment results with real-world clinical data on the tasks of predicting death and abnormal lab tests prove the effectiveness of our proposed approach over competitive baselines.