Wei Wang

Qianqian Wang, Wei Wang, Yuqi Fang et al.

Resting-state functional magnetic resonance imaging (rs-fMRI) can reflect spontaneous neural activities in brain and is widely used for brain disorder analysis.Previous studies propose to extract fMRI representations through diverse machine/deep learning methods for subsequent analysis. But the learned features typically lack biological interpretability, which limits their clinical utility. From the view of graph theory, the brain exhibits a remarkable modular structure in spontaneous brain functional networks, with each module comprised of functionally interconnected brain regions-of-interest (ROIs). However, most existing learning-based methods for fMRI analysis fail to adequately utilize such brain modularity prior. In this paper, we propose a Brain Modularity-constrained dynamic Representation learning (BMR) framework for interpretable fMRI analysis, consisting of three major components: (1) dynamic graph construction, (2) dynamic graph learning via a novel modularity-constrained graph neural network(MGNN), (3) prediction and biomarker detection for interpretable fMRI analysis. Especially, three core neurocognitive modules (i.e., salience network, central executive network, and default mode network) are explicitly incorporated into the MGNN, encouraging the nodes/ROIs within the same module to share similar representations. To further enhance discriminative ability of learned features, we also encourage the MGNN to preserve the network topology of input graphs via a graph topology reconstruction constraint. Experimental results on 534 subjects with rs-fMRI scans from two datasets validate the effectiveness of the proposed method. The identified discriminative brain ROIs and functional connectivities can be regarded as potential fMRI biomarkers to aid in clinical diagnosis.

Yijing Yang, Wei Wang, Hongyu Fu et al.

The application of machine learning to image and video data often yields a high dimensional feature space. Effective feature selection techniques identify a discriminant feature subspace that lowers computational and modeling costs with little performance degradation. A novel supervised feature selection methodology is proposed for machine learning decisions in this work. The resulting tests are called the discriminant feature test (DFT) and the relevant feature test (RFT) for the classification and regression problems, respectively. The DFT and RFT procedures are described in detail. Furthermore, we compare the effectiveness of DFT and RFT with several classic feature selection methods. To this end, we use deep features obtained by LeNet-5 for MNIST and Fashion-MNIST datasets as illustrative examples. Other datasets with handcrafted and gene expressions features are also included for performance evaluation. It is shown by experimental results that DFT and RFT can select a lower dimensional feature subspace distinctly and robustly while maintaining high decision performance.

Yaosen Chen, Wei Wang, Tianheng Zheng et al.

Shot assembly is a crucial step in film production and video editing, involving the sequencing and arrangement of shots to construct a narrative, convey information, or evoke emotions. Traditionally, this process has been manually executed by experienced editors. While current intelligent video editing technologies can handle some automated video editing tasks, they often fail to capture the creator's unique artistic expression in shot assembly. To address this challenge, we propose an energy-based optimization method for video shot assembly. Specifically, we first perform visual-semantic matching between the script generated by a large language model and a video library to obtain subsets of candidate shots aligned with the script semantics. Next, we segment and label the shots from reference videos, extracting attributes such as shot size, camera motion, and semantics. We then employ energy-based models to learn from these attributes, scoring candidate shot sequences based on their alignment with reference styles. Finally, we achieve shot assembly optimization by combining multiple syntax rules, producing videos that align with the assembly style of the reference videos. Our method not only automates the arrangement and combination of independent shots according to specific logic, narrative requirements, or artistic styles but also learns the assembly style of reference videos, creating a coherent visual sequence or holistic visual expression. With our system, even users with no prior video editing experience can create visually compelling videos. Project page: https://sobeymil.github.io/esa.com

Jian Li, Yong Liu, Wei Wang et al.

Recent Newton-type federated learning algorithms have demonstrated linear convergence with respect to the communication rounds. However, communicating Hessian matrices is often unfeasible due to their quadratic communication complexity. In this paper, we introduce a novel approach to tackle this issue while still achieving fast convergence rates. Our proposed method, named as Federated Newton Sketch methods (FedNS), approximates the centralized Newton's method by communicating the sketched square-root Hessian instead of the exact Hessian. To enhance communication efficiency, we reduce the sketch size to match the effective dimension of the Hessian matrix. We provide convergence analysis based on statistical learning for the federated Newton sketch approaches. Specifically, our approaches reach super-linear convergence rates w.r.t. the communication rounds for the first time. We validate the effectiveness of our algorithms through various experiments, which coincide with our theoretical findings.

Fang Sun, Zijie Huang, Haixin Wang et al.

Accurately predicting long-horizon molecular dynamics (MD) trajectories remains a significant challenge, as existing deep learning methods often struggle to retain fidelity over extended simulations. We hypothesize that one key factor limiting accuracy is the difficulty of capturing interactions that span distinct spatial and temporal scales, ranging from high-frequency local vibrations to low-frequency global conformational changes. To address these limitations, we propose Graph Fourier Neural ODEs (GF-NODE), integrating a graph Fourier transform for spatial frequency decomposition with a Neural ODE framework for continuous-time evolution. Specifically, GF-NODE first decomposes molecular configurations into multiple spatial frequency modes using the graph Laplacian, then evolves the frequency components in time via a learnable Neural ODE module that captures both local and global dynamics, and finally reconstructs the updated molecular geometry through an inverse graph Fourier transform. By explicitly modeling high- and low-frequency phenomena in this unified pipeline, GF-NODE captures long-range correlations and local fluctuations more effectively. We provide theoretical insight through heat equation analysis on a simplified diffusion model, demonstrating how graph Laplacian eigenvalues can determine temporal dynamics scales, and crucially validate this correspondence through comprehensive empirical analysis on real molecular dynamics trajectories showing quantitative spatial-temporal correlations across diverse molecular systems. Experimental results on challenging MD benchmarks demonstrate that GF-NODE achieves state-of-the-art accuracy while preserving essential geometrical features over extended simulations. These findings highlight the promise of bridging spectral decomposition with continuous-time modeling to improve the robustness and predictive power of MD simulations.

Wei Wang, Yang Liu, Hao Sun

Time series prediction is a prevalent issue across various disciplines, such as meteorology, traffic surveillance, investment, and energy production and consumption. Many statistical and machine-learning strategies have been developed to tackle this problem. However, these approaches either lack explainability or exhibit less satisfactory performance when the prediction horizon increases. To this end, we propose a novel plan for the designing of networks' architecture based on transformations, possessing the potential to achieve an enhanced receptive field in learning which brings benefits to fuse features across scales. In this context, we introduce four different transformation mechanisms as bases to construct the learning model including Fourier Transform (FT), Singular Value Decomposition (SVD), matrix multiplication and Conv block. Hence, we develop four learning models based on the above building blocks, namely, FT-Matrix, FT-SVD, FT-Conv, and Conv-SVD. Note that the FT and SVD blocks are capable of learning global information, while the Conv blocks focus on learning local information. The matrix block is sparsely designed to learn both global and local information simultaneously. The above Transformation Learning Networks (TLNets) have been extensively tested and compared with multiple baseline models based on several real-world datasets and showed clear potential in long-range time-series forecasting.

Zijie Huang, Yizhou Sun, Wei Wang

Many real-world systems, such as moving planets, can be considered as multi-agent dynamic systems, where objects interact with each other and co-evolve along with the time. Such dynamics is usually difficult to capture, and understanding and predicting the dynamics based on observed trajectories of objects become a critical research problem in many domains. Most existing algorithms, however, assume the observations are regularly sampled and all the objects can be fully observed at each sampling time, which is impractical for many applications. In this paper, we propose to learn system dynamics from irregularly-sampled partial observations with underlying graph structure for the first time. To tackle the above challenge, we present LG-ODE, a latent ordinary differential equation generative model for modeling multi-agent dynamic system with known graph structure. It can simultaneously learn the embedding of high dimensional trajectories and infer continuous latent system dynamics. Our model employs a novel encoder parameterized by a graph neural network that can infer initial states in an unsupervised way from irregularly-sampled partial observations of structural objects and utilizes neuralODE to infer arbitrarily complex continuous-time latent dynamics. Experiments on motion capture, spring system, and charged particle datasets demonstrate the effectiveness of our approach.

Ziheng Duan, Haoyan Xu, Yueyang Wang et al.

With the advancement of sensing technology, multivariate time series classification (MTSC) has recently received considerable attention. Existing deep learning-based MTSC techniques, which mostly rely on convolutional or recurrent neural networks, are primarily concerned with the temporal dependency of single time series. As a result, they struggle to express pairwise dependencies among multivariate variables directly. Furthermore, current spatial-temporal modeling (e.g., graph classification) methodologies based on Graph Neural Networks (GNNs) are inherently flat and cannot aggregate hub data in a hierarchical manner. To address these limitations, we propose a novel graph pooling-based framework MTPool to obtain the expressive global representation of MTS. We first convert MTS slices to graphs by utilizing interactions of variables via graph structure learning module and attain the spatial-temporal graph node features via temporal convolutional module. To get global graph-level representation, we design an "encoder-decoder" based variational graph pooling module for creating adaptive centroids for cluster assignments. Then we combine GNNs and our proposed variational graph pooling layers for joint graph representation learning and graph coarsening, after which the graph is progressively coarsened to one node. At last, a differentiable classifier takes this coarsened representation to get the final predicted class. Experiments on ten benchmark datasets exhibit MTPool outperforms state-of-the-art strategies in the MTSC task.

Bin Duan, Hao Tang, Wei Wang et al.

The major challenge in audio-visual event localization task lies in how to fuse information from multiple modalities effectively. Recent works have shown that attention mechanism is beneficial to the fusion process. In this paper, we propose a novel joint attention mechanism with multimodal fusion methods for audio-visual event localization. Particularly, we present a concise yet valid architecture that effectively learns representations from multiple modalities in a joint manner. Initially, visual features are combined with auditory features and then turned into joint representations. Next, we make use of the joint representations to attend to visual features and auditory features, respectively. With the help of this joint co-attention, new visual and auditory features are produced, and thus both features can enjoy the mutually improved benefits from each other. It is worth noting that the joint co-attention unit is recursive meaning that it can be performed multiple times for obtaining better joint representations progressively. Extensive experiments on the public AVE dataset have shown that the proposed method achieves significantly better results than the state-of-the-art methods.

Ziqiang Cheng, Yang Yang, Wei Wang et al.

Time series modeling has attracted extensive research efforts; however, achieving both reliable efficiency and interpretability from a unified model still remains a challenging problem. Among the literature, shapelets offer interpretable and explanatory insights in the classification tasks, while most existing works ignore the differing representative power at different time slices, as well as (more importantly) the evolution pattern of shapelets. In this paper, we propose to extract time-aware shapelets by designing a two-level timing factor. Moreover, we define and construct the shapelet evolution graph, which captures how shapelets evolve over time and can be incorporated into the time series embeddings by graph embedding algorithms. To validate whether the representations obtained in this way can be applied effectively in various scenarios, we conduct experiments based on three public time series datasets, and two real-world datasets from different domains. Experimental results clearly show the improvements achieved by our approach compared with 17 state-of-the-art baselines.

Chengyu Liu, Wei Wang

Machine learning algorithms such as linear regression, SVM and neural network have played an increasingly important role in the process of scientific discovery. However, none of them is both interpretable and accurate on nonlinear datasets. Here we present contextual regression, a method that joins these two desirable properties together using a hybrid architecture of neural network embedding and dot product layer. We demonstrate its high prediction accuracy and sensitivity through the task of predictive feature selection on a simulated dataset and the application of predicting open chromatin sites in the human genome. On the simulated data, our method achieved high fidelity recovery of feature contributions under random noise levels up to 200%. On the open chromatin dataset, the application of our method not only outperformed the state of the art method in terms of accuracy, but also unveiled two previously unfound open chromatin related histone marks. Our method can fill the blank of accurate and interpretable nonlinear modeling in scientific data mining tasks.

Yan Huang, Wei Wang, Liang Wang

Effective image and sentence matching depends on how to well measure their global visual-semantic similarity. Based on the observation that such a global similarity arises from a complex aggregation of multiple local similarities between pairwise instances of image (objects) and sentence (words), we propose a selective multimodal Long Short-Term Memory network (sm-LSTM) for instance-aware image and sentence matching. The sm-LSTM includes a multimodal context-modulated attention scheme at each timestep that can selectively attend to a pair of instances of image and sentence, by predicting pairwise instance-aware saliency maps for image and sentence. For selected pairwise instances, their representations are obtained based on the predicted saliency maps, and then compared to measure their local similarity. By similarly measuring multiple local similarities within a few timesteps, the sm-LSTM sequentially aggregates them with hidden states to obtain a final matching score as the desired global similarity. Extensive experiments show that our model can well match image and sentence with complex content, and achieve the state-of-the-art results on two public benchmark datasets.

Zhifei Zhang, Yang Song, Wei Wang et al.

The staggering amount of streaming time series coming from the real world calls for more efficient and effective online modeling solution. For time series modeling, most existing works make some unrealistic assumptions such as the input data is of fixed length or well aligned, which requires extra effort on segmentation or normalization of the raw streaming data. Although some literature claim their approaches to be invariant to data length and misalignment, they are too time-consuming to model a streaming time series in an online manner. We propose a novel and more practical online modeling and classification scheme, DDE-MGM, which does not make any assumptions on the time series while maintaining high efficiency and state-of-the-art performance. The derivative delay embedding (DDE) is developed to incrementally transform time series to the embedding space, where the intrinsic characteristics of data is preserved as recursive patterns regardless of the stream length and misalignment. Then, a non-parametric Markov geographic model (MGM) is proposed to both model and classify the pattern in an online manner. Experimental results demonstrate the effectiveness and superior classification accuracy of the proposed DDE-MGM in an online setting as compared to the state-of-the-art.