Yijie Pan

Xinghao Chen, Zhijing Sun, Wenjin Guo et al.

Large Language Models (LLMs) excel in reasoning tasks through Chain-of-Thought (CoT) prompting. However, CoT prompting greatly increases computational demands, which has prompted growing interest in distilling CoT capabilities into Small Language Models (SLMs). This study systematically examines the factors influencing CoT distillation, including the choice of granularity, format and teacher model. Through experiments involving four teacher models and seven student models across seven mathematical and commonsense reasoning datasets, we uncover three key findings: (1) Unlike LLMs, SLMs exhibit a non-monotonic relationship with granularity, with stronger models benefiting from finer-grained reasoning and weaker models performing better with simpler CoT supervision; (2) CoT format significantly impacts LLMs but has minimal effect on SLMs, likely due to their reliance on supervised fine-tuning rather than pretraining preferences; (3) Stronger teacher models do NOT always produce better student models, as diversity and complexity in CoT supervision can outweigh accuracy alone. These findings emphasize the need to tailor CoT strategies to specific student model, offering actionable insights for optimizing CoT distillation in SLMs. The code and datasets are available at https://github.com/EIT-NLP/Distilling-CoT-Reasoning.

Yingqi Fan, Anhao Zhao, Jinlan Fu et al.

Multimodal Large Language Models (MLLMs) have achieved strong performance across vision-language tasks, but suffer from significant computational overhead due to the quadratic growth of attention computations with the number of multimodal tokens. Though efforts have been made to prune tokens in MLLMs, \textit{they lack a fundamental understanding of how MLLMs process and fuse multimodal information.} Through systematic analysis, we uncover a \textbf{three-stage} cross-modal interaction process: (1) Shallow layers recognize task intent, with visual tokens acting as passive attention sinks; (2) Cross-modal fusion occurs abruptly in middle layers, driven by a few critical visual tokens; (3) Deep layers discard vision tokens, focusing solely on linguistic refinement. Based on these findings, we propose \emph{VisiPruner}, a training-free pruning framework that reduces up to 99\% of vision-related attention computations and 53.9\% of FLOPs on LLaVA-v1.5 7B. It significantly outperforms existing token pruning methods and generalizes across diverse MLLMs. Beyond pruning, our insights further provide actionable guidelines for training efficient MLLMs by aligning model architecture with its intrinsic layer-wise processing dynamics. Our code is available at: https://github.com/EIT-NLP/VisiPruner.

Yu Li, Chao Huang, Lizhong Ding et al.

Deep learning, which is especially formidable in handling big data, has achieved great success in various fields, including bioinformatics. With the advances of the big data era in biology, it is foreseeable that deep learning will become increasingly important in the field and will be incorporated in vast majorities of analysis pipelines. In this review, we provide both the exoteric introduction of deep learning, and concrete examples and implementations of its representative applications in bioinformatics. We start from the recent achievements of deep learning in the bioinformatics field, pointing out the problems which are suitable to use deep learning. After that, we introduce deep learning in an easy-to-understand fashion, from shallow neural networks to legendary convolutional neural networks, legendary recurrent neural networks, graph neural networks, generative adversarial networks, variational autoencoder, and the most recent state-of-the-art architectures. After that, we provide eight examples, covering five bioinformatics research directions and all the four kinds of data type, with the implementation written in Tensorflow and Keras. Finally, we discuss the common issues, such as overfitting and interpretability, that users will encounter when adopting deep learning methods and provide corresponding suggestions. The implementations are freely available at \url{https://github.com/lykaust15/Deep_learning_examples}.

Yu Li, Zhongxiao Li, Lizhong Ding et al.

A plain well-trained deep learning model often does not have the ability to learn new knowledge without forgetting the previously learned knowledge, which is known as catastrophic forgetting. Here we propose a novel method, SupportNet, to efficiently and effectively solve the catastrophic forgetting problem in the class incremental learning scenario. SupportNet combines the strength of deep learning and support vector machine (SVM), where SVM is used to identify the support data from the old data, which are fed to the deep learning model together with the new data for further training so that the model can review the essential information of the old data when learning the new information. Two powerful consolidation regularizers are applied to stabilize the learned representation and ensure the robustness of the learned model. We validate our method with comprehensive experiments on various tasks, which show that SupportNet drastically outperforms the state-of-the-art incremental learning methods and even reaches similar performance as the deep learning model trained from scratch on both old and new data. Our program is accessible at: https://github.com/lykaust15/SupportNet

Meiyan Xu, Qingqing Chen, Duo Chen et al.

EEG-based fatigue monitoring can effectively reduce the incidence of related traffic accidents. In the past decade, with the advancement of deep learning, convolutional neural networks (CNN) have been increasingly used for EEG signal processing. However, due to the data's non-Euclidean characteristics, existing CNNs may lose important spatial information from EEG, specifically channel correlation. Thus, we propose the node-holistic graph convolutional network (NHGNet), a model that uses graphic convolution to dynamically learn each channel's features. With exact fit attention optimization, the network captures inter-channel correlations through a trainable adjacency matrix. The interpretability is enhanced by revealing critical areas of brain activity and their interrelations in various mental states. In validations on two public datasets, NHGNet outperforms the SOTAs. Specifically, in the intra-subject, NHGNet improved detection accuracy by at least 2.34% and 3.42%, and in the inter-subjects, it improved by at least 2.09% and 15.06%. Visualization research on the model revealed that the central parietal area plays an important role in detecting fatigue levels, whereas the frontal and temporal lobes are essential for maintaining vigilance.