Zhihong Liu

Zhihong Liu, Hoang Anh Just, Xiangyu Chang et al.

Data valuation -- quantifying the contribution of individual data sources to certain predictive behaviors of a model -- is of great importance to enhancing the transparency of machine learning and designing incentive systems for data sharing. Existing work has focused on evaluating data sources with the shared feature or sample space. How to valuate fragmented data sources of which each only contains partial features and samples remains an open question. We start by presenting a method to calculate the counterfactual of removing a fragment from the aggregated data matrix. Based on the counterfactual calculation, we further propose 2D-Shapley, a theoretical framework for fragmented data valuation that uniquely satisfies some appealing axioms in the fragmented data context. 2D-Shapley empowers a range of new use cases, such as selecting useful data fragments, providing interpretation for sample-wise data values, and fine-grained data issue diagnosis.

Yang Nan, Fengyi Li, Peng Tang et al.

Recognition of glomeruli lesions is the key for diagnosis and treatment planning in kidney pathology; however, the coexisting glomerular structures such as mesangial regions exacerbate the difficulties of this task. In this paper, we introduce a scheme to recognize fine-grained glomeruli lesions from whole slide images. First, a focal instance structural similarity loss is proposed to drive the model to locate all types of glomeruli precisely. Then an Uncertainty Aided Apportionment Network is designed to carry out the fine-grained visual classification without bounding-box annotations. This double branch-shaped structure extracts common features of the child class from the parent class and produces the uncertainty factor for reconstituting the training dataset. Results of slide-wise evaluation illustrate the effectiveness of the entire scheme, with an 8-22% improvement of the mean Average Precision compared with remarkable detection methods. The comprehensive results clearly demonstrate the effectiveness of the proposed method.

Yang Nan, Peng Tang, Guyue Zhang et al.

Tissue segmentation is the mainstay of pathological examination, whereas the manual delineation is unduly burdensome. To assist this time-consuming and subjective manual step, researchers have devised methods to automatically segment structures in pathological images. Recently, automated machine and deep learning based methods dominate tissue segmentation research studies. However, most machine and deep learning based approaches are supervised and developed using a large number of training samples, in which the pixelwise annotations are expensive and sometimes can be impossible to obtain. This paper introduces a novel unsupervised learning paradigm by integrating an end-to-end deep mixture model with a constrained indicator to acquire accurate semantic tissue segmentation. This constraint aims to centralise the components of deep mixture models during the calculation of the optimisation function. In so doing, the redundant or empty class issues, which are common in current unsupervised learning methods, can be greatly reduced. By validation on both public and in-house datasets, the proposed deep constrained Gaussian network achieves significantly (Wilcoxon signed-rank test) better performance (with the average Dice scores of 0.737 and 0.735, respectively) on tissue segmentation with improved stability and robustness, compared to other existing unsupervised segmentation approaches. Furthermore, the proposed method presents a similar performance (p-value > 0.05) compared to the fully supervised U-Net.

Mengmeng Wu, Zhihong Liu, Xiang Li et al.

As data plays an increasingly pivotal role in decision-making, the emergence of data markets underscores the growing importance of data valuation. Within the machine learning landscape, Data Shapley stands out as a widely embraced method for data valuation. However, a limitation of Data Shapley is its assumption of a fixed dataset, contrasting with the dynamic nature of real-world applications where data constantly evolves and expands. This paper establishes the relationship between Data Shapley and infinite-order U-statistics and addresses this limitation by quantifying the uncertainty of Data Shapley with changes in data distribution from the perspective of U-statistics. We make statistical inferences on data valuation to obtain confidence intervals for the estimations. We construct two different algorithms to estimate this uncertainty and provide recommendations for their applicable situations. We also conduct a series of experiments on various datasets to verify asymptotic normality and propose a practical trading scenario enabled by this method.

Guanghu Xie, Yonglong Zhang, Zhiduo Jiang et al.

Transparent and reflective objects pose significant challenges for depth sensors, resulting in incomplete depth information that adversely affects downstream robotic perception and manipulation tasks. To address this issue, we propose HTMNet, a novel hybrid model integrating Transformer, CNN, and Mamba architectures. The encoder is based on a dual-branch CNN-Transformer framework, the bottleneck fusion module adopts a Transformer-Mamba architecture, and the decoder is built upon a multi-scale fusion module. We introduce a novel multimodal fusion module grounded in self-attention mechanisms and state space models, marking the first application of the Mamba architecture in the field of transparent object depth completion and revealing its promising potential. Additionally, we design an innovative multi-scale fusion module for the decoder that combines channel attention, spatial attention, and multi-scale feature extraction techniques to effectively integrate multi-scale features through a down-fusion strategy. Extensive evaluations on multiple public datasets demonstrate that our model achieves state-of-the-art(SOTA) performance, validating the effectiveness of our approach.

Wenhao Li, Hongkuan Zhang, Hongwei Zhang et al.

Current medical language models, adapted from large language models (LLMs), typically predict ICD code-based diagnosis from electronic health records (EHRs) because these labels are readily available. However, ICD codes do not capture the nuanced, context-rich reasoning clinicians use for diagnosis. Clinicians synthesize diverse patient data and reference clinical practice guidelines (CPGs) to make evidence-based decisions. This misalignment limits the clinical utility of existing models. We introduce GARMLE-G, a Generation-Augmented Retrieval framework that grounds medical language model outputs in authoritative CPGs. Unlike conventional Retrieval-Augmented Generation based approaches, GARMLE-G enables hallucination-free outputs by directly retrieving authoritative guideline content without relying on model-generated text. It (1) integrates LLM predictions with EHR data to create semantically rich queries, (2) retrieves relevant CPG knowledge snippets via embedding similarity, and (3) fuses guideline content with model output to generate clinically aligned recommendations. A prototype system for hypertension diagnosis was developed and evaluated on multiple metrics, demonstrating superior retrieval precision, semantic relevance, and clinical guideline adherence compared to RAG-based baselines, while maintaining a lightweight architecture suitable for localized healthcare deployment. This work provides a scalable, low-cost, and hallucination-free method for grounding medical language models in evidence-based clinical practice, with strong potential for broader clinical deployment.

Zhang Li, Jiehua Zhang, Tao Tan et al.

Accurate segmentation of lung cancer in pathology slides is a critical step in improving patient care. We proposed the ACDC@LungHP (Automatic Cancer Detection and Classification in Whole-slide Lung Histopathology) challenge for evaluating different computer-aided diagnosis (CADs) methods on the automatic diagnosis of lung cancer. The ACDC@LungHP 2019 focused on segmentation (pixel-wise detection) of cancer tissue in whole slide imaging (WSI), using an annotated dataset of 150 training images and 50 test images from 200 patients. This paper reviews this challenge and summarizes the top 10 submitted methods for lung cancer segmentation. All methods were evaluated using the false positive rate, false negative rate, and DICE coefficient (DC). The DC ranged from 0.7354$\pm$0.1149 to 0.8372$\pm$0.0858. The DC of the best method was close to the inter-observer agreement (0.8398$\pm$0.0890). All methods were based on deep learning and categorized into two groups: multi-model method and single model method. In general, multi-model methods were significantly better ($\textit{p}$<$0.01$) than single model methods, with mean DC of 0.7966 and 0.7544, respectively. Deep learning based methods could potentially help pathologists find suspicious regions for further analysis of lung cancer in WSI.

Bingzhe Wu, Shiwan Zhao, Guangyu Sun et al.

Recently, deep convolutional neural networks (CNNs) have achieved great success in pathological image classification. However, due to the limited number of labeled pathological images, there are still two challenges to be addressed: (1) overfitting: the performance of a CNN model is undermined by the overfitting due to its huge amounts of parameters and the insufficiency of labeled training data. (2) privacy leakage: the model trained using a conventional method may involuntarily reveal the private information of the patients in the training dataset. The smaller the dataset, the worse the privacy leakage. To tackle the above two challenges, we introduce a novel stochastic gradient descent (SGD) scheme, named patient privacy preserving SGD (P3SGD), which performs the model update of the SGD in the patient level via a large-step update built upon each patient's data. Specifically, to protect privacy and regularize the CNN model, we propose to inject the well-designed noise into the updates. Moreover, we equip our P3SGD with an elaborated strategy to adaptively control the scale of the injected noise. To validate the effectiveness of P3SGD, we perform extensive experiments on a real-world clinical dataset and quantitatively demonstrate the superior ability of P3SGD in reducing the risk of overfitting. We also provide a rigorous analysis of the privacy cost under differential privacy. Additionally, we find that the models trained with P3SGD are resistant to the model-inversion attack compared with those trained using non-private SGD.

Bingzhe Wu, Xiaolu Zhang, Shiwan Zhao et al.

Pathological glomerulus classification plays a key role in the diagnosis of nephropathy. As the difference between different subcategories is subtle, doctors often refer to slides from different staining methods to make decisions. However, creating correspondence across various stains is labor-intensive, bringing major difficulties in collecting data and training a vision-based algorithm to assist nephropathy diagnosis. This paper provides an alternative solution for integrating multi-stained visual cues for glomerulus classification. Our approach, named generator-to-classifier (G2C), is a two-stage framework. Given an input image from a specified stain, several generators are first applied to estimate its appearances in other staining methods, and a classifier follows to combine visual cues from different stains for prediction (whether it is pathological, or which type of pathology it has). We optimize these two stages in a joint manner. To provide a reasonable initialization, we pre-train the generators in an unlabeled reference set under an unpaired image-to-image translation task, and then fine-tune them together with the classifier. We conduct experiments on a glomerulus type classification dataset collected by ourselves (there are no publicly available datasets for this purpose). Although joint optimization slightly harms the authenticity of the generated patches, it boosts classification performance, suggesting more effective visual cues are extracted in an automatic way. We also transfer our model to a public dataset for breast cancer classification, and outperform the state-of-the-arts significantly.