Lin Li

Jianing Qiu, Jian Wu, Hao Wei et al.

We present VisionFM, a foundation model pre-trained with 3.4 million ophthalmic images from 560,457 individuals, covering a broad range of ophthalmic diseases, modalities, imaging devices, and demography. After pre-training, VisionFM provides a foundation to foster multiple ophthalmic artificial intelligence (AI) applications, such as disease screening and diagnosis, disease prognosis, subclassification of disease phenotype, and systemic biomarker and disease prediction, with each application enhanced with expert-level intelligence and accuracy. The generalist intelligence of VisionFM outperformed ophthalmologists with basic and intermediate levels in jointly diagnosing 12 common ophthalmic diseases. Evaluated on a new large-scale ophthalmic disease diagnosis benchmark database, as well as a new large-scale segmentation and detection benchmark database, VisionFM outperformed strong baseline deep neural networks. The ophthalmic image representations learned by VisionFM exhibited noteworthy explainability, and demonstrated strong generalizability to new ophthalmic modalities, disease spectrum, and imaging devices. As a foundation model, VisionFM has a large capacity to learn from diverse ophthalmic imaging data and disparate datasets. To be commensurate with this capacity, in addition to the real data used for pre-training, we also generated and leveraged synthetic ophthalmic imaging data. Experimental results revealed that synthetic data that passed visual Turing tests, can also enhance the representation learning capability of VisionFM, leading to substantial performance gains on downstream ophthalmic AI tasks. Beyond the ophthalmic AI applications developed, validated, and demonstrated in this work, substantial further applications can be achieved in an efficient and cost-effective manner using VisionFM as the foundation.

Jiping Luo, Tingting Zhang, Rui Hao et al.

Cooperative coordination at unsignalized road intersections, which aims to improve the driving safety and traffic throughput for connected and automated vehicles, has attracted increasing interests in recent years. However, most existing investigations either suffer from computational complexity or cannot harness the full potential of the road infrastructure. To this end, we first present a dedicated intersection coordination framework, where the involved vehicles hand over their control authorities and follow instructions from a centralized coordinator. Then a unified cooperative trajectory optimization problem will be formulated to maximize the traffic throughput while ensuring the driving safety and long-term stability of the coordination system. To address the key computational challenges in the real-world deployment, we reformulate this non-convex sequential decision problem into a model-free Markov Decision Process (MDP) and tackle it by devising a Twin Delayed Deep Deterministic Policy Gradient (TD3)-based strategy in the deep reinforcement learning (DRL) framework. Simulation and practical experiments show that the proposed strategy could achieve near-optimal performance in sub-static coordination scenarios and significantly improve the traffic throughput in the realistic continuous traffic flow. The most remarkable advantage is that our strategy could reduce the time complexity of computation to milliseconds, and is shown scalable when the road lanes increase.

Lin Li, Xinchun Yu, Xinyu Chen et al.

Public Code Review (PCR) is developed in the Software Question Answering (SQA) community, assisting developers in exploring high-quality and efficient review services. Current methods on PCR mainly focus on the reviewer's perspective, including finding a capable reviewer, predicting comment quality, and recommending/generating review comments. However, it is not well studied that how to satisfy the review necessity requests posted by developers which can increase their visibility, which in turn acts as a prerequisite for better review responses. To this end, we propose K nowledge-guided P rompt learning for P ublic Code Review (KP-PCR) to achieve developer-based code review request quality assurance (i.e., predicting request necessity and recommending tags subtask). Specifically, we reformulate the two subtasks via 1) text prompt tuning which converts both of them into a Masked Language Model (MLM) by constructing prompt templates using hard prompt; and 2) knowledge and code prefix tuning which introduces knowledge guidance from fine-tuned large language models by soft prompt, and uses program dependence graph to characterize code snippets. Finally, both of the request necessity prediction and tag recommendation subtasks output predicted results through an answer engineering module. In addition, we further analysis the time complexity of our KP-PCR that has lightweight prefix based the operation of introducing knowledge guidance. Experimental results on the PCR dataset for the period 2011-2023 demonstrate that our KP-PCR outperforms baselines by 2.3%-8.4% in the request necessity prediction and by 1.4%-6.9% in the tag recommendation. The code implementation is released at https://github.com/WUT-IDEA/KP-PCR

Shihan Zhao, Jianru Zhang, Yanan Wu et al.

Fluorescence Molecular Tomography (FMT) is a promising technique for non-invasive 3D visualization of fluorescent probes, but its reconstruction remains challenging due to the inherent ill-posedness and reliance on inaccurate or often-unknown tissue optical properties. While deep learning methods have shown promise, their supervised nature limits generalization beyond training data. To address these problems, we propose $μ$NeuFMT, a self-supervised FMT reconstruction framework that integrates implicit neural-based scene representation with explicit physical modeling of photon propagation. Its key innovation lies in jointly optimize both the fluorescence distribution and the optical properties ($μ$) during reconstruction, eliminating the need for precise prior knowledge of tissue optics or pre-conditioned training data. We demonstrate that $μ$NeuFMT robustly recovers accurate fluorophore distributions and optical coefficients even with severely erroneous initial values (0.5$\times$ to 2$\times$ of ground truth). Extensive numerical, phantom, and in vivo validations show that $μ$NeuFMT outperforms conventional and supervised deep learning approaches across diverse heterogeneous scenarios. Our work establishes a new paradigm for robust and accurate FMT reconstruction, paving the way for more reliable molecular imaging in complex clinically related scenarios, such as fluorescence guided surgery.

Simi Job, Xiaohui Tao, Taotao Cai et al.

The exploration of Graph Neural Networks (GNNs) for processing graph-structured data has expanded, particularly their potential for causal analysis due to their universal approximation capabilities. Anticipated to significantly enhance common graph-based tasks such as classification and prediction, the development of a causally enhanced GNN framework is yet to be thoroughly investigated. Addressing this shortfall, our study delves into nine benchmark graph classification models, testing their strength and versatility across seven datasets spanning three varied domains to discern the impact of causality on the predictive prowess of GNNs. This research offers a detailed assessment of these models, shedding light on their efficiency, and flexibility in different data environments, and highlighting areas needing advancement. Our findings are instrumental in furthering the understanding and practical application of GNNs in diverse datacentric fields

Xinyu Hu, Mingqi Gao, Li Lin et al.

In NLG meta-evaluation, evaluation metrics are typically assessed based on their consistency with humans. However, we identify some limitations in traditional NLG meta-evaluation approaches, such as issues in handling human ratings and ambiguous selections of correlation measures, which undermine the effectiveness of meta-evaluation. In this work, we propose a dual-perspective NLG meta-evaluation framework that focuses on different evaluation capabilities, thereby providing better interpretability. In addition, we introduce a method of automatically constructing the corresponding benchmarks without requiring new human annotations. Furthermore, we conduct experiments with 16 representative LLMs as the evaluators based on our proposed framework, comprehensively analyzing their evaluation performance from different perspectives.

Xinyu Chen, Lin Li, Rui Zhang et al.

Public Code Review (PCR) can be implemented through a Software Question Answering (SQA) community, which facilitates high knowledge dissemination. Current methods mainly focus on the reviewer's perspective, including finding a capable reviewer, predicting comment quality, and recommending/generating review comments. Our intuition is that satisfying review necessity requests can increase their visibility, which in turn is a prerequisite for better review responses. To this end, we propose a unified framework called UniPCR to complete developer-based request quality assurance (i.e., predicting request necessity and recommending tags subtask) under a Masked Language Model (MLM). Specifically, we reformulate both subtasks via 1) text prompt tuning, which converts two subtasks into MLM by constructing prompt templates using hard prompt; 2) code prefix tuning, which optimizes a small segment of generated continuous vectors as the prefix of the code representation using soft prompt. Experimental results on the Public Code Review dataset for the time span 2011-2022 demonstrate that our UniPCR framework adapts to the two subtasks and outperforms comparable accuracy-based results with state-of-the-art methods for request quality assurance. These conclusions highlight the effectiveness of our unified framework from the developer's perspective in public code review.

Yi Lin, Bo Yang, Linchao Li et al.

In this paper, a multilingual end-to-end framework, called as ATCSpeechNet, is proposed to tackle the issue of translating communication speech into human-readable text in air traffic control (ATC) systems. In the proposed framework, we focus on integrating the multilingual automatic speech recognition (ASR) into one model, in which an end-to-end paradigm is developed to convert speech waveform into text directly, without any feature engineering or lexicon. In order to make up for the deficiency of the handcrafted feature engineering caused by ATC challenges, a speech representation learning (SRL) network is proposed to capture robust and discriminative speech representations from the raw wave. The self-supervised training strategy is adopted to optimize the SRL network from unlabeled data, and further to predict the speech features, i.e., wave-to-feature. An end-to-end architecture is improved to complete the ASR task, in which a grapheme-based modeling unit is applied to address the multilingual ASR issue. Facing the problem of small transcribed samples in the ATC domain, an unsupervised approach with mask prediction is applied to pre-train the backbone network of the ASR model on unlabeled data by a feature-to-feature process. Finally, by integrating the SRL with ASR, an end-to-end multilingual ASR framework is formulated in a supervised manner, which is able to translate the raw wave into text in one model, i.e., wave-to-text. Experimental results on the ATCSpeech corpus demonstrate that the proposed approach achieves a high performance with a very small labeled corpus and less resource consumption, only 4.20% label error rate on the 58-hour transcribed corpus. Compared to the baseline model, the proposed approach obtains over 100% relative performance improvement which can be further enhanced with the increasing of the size of the transcribed samples.