Jingyu Liu

Yuda Bi, Anees Abrol, Zening Fu et al.

Deep learning algorithms for predicting neuroimaging data have shown considerable promise in various applications. Prior work has demonstrated that deep learning models that take advantage of the data's 3D structure can outperform standard machine learning on several learning tasks. However, most prior research in this area has focused on neuroimaging data from adults. Within the Adolescent Brain and Cognitive Development (ABCD) dataset, a large longitudinal development study, we examine structural MRI data to predict gender and identify gender-related changes in brain structure. Results demonstrate that gender prediction accuracy is exceptionally high (>97%) with training epochs >200 and that this accuracy increases with age. Brain regions identified as the most discriminative in the task under study include predominantly frontal areas and the temporal lobe. When evaluating gender predictive changes specific to a two-year increase in age, a broader set of visual, cingulate, and insular regions are revealed. Our findings show a robust gender-related structural brain change pattern, even over a small age range. This suggests that it might be possible to study how the brain changes during adolescence by looking at how these changes are related to different behavioral and environmental factors.

Riyasat Ohib, Bishal Thapaliya, Pratyush Gaggenapalli et al.

Federated learning (FL) enables the training of a model leveraging decentralized data in client sites while preserving privacy by not collecting data. However, one of the significant challenges of FL is limited computation and low communication bandwidth in resource limited edge client nodes. To address this, several solutions have been proposed in recent times including transmitting sparse models and learning dynamic masks iteratively, among others. However, many of these methods rely on transmitting the model weights throughout the entire training process as they are based on ad-hoc or random pruning criteria. In this work, we propose Salient Grads, which simplifies the process of sparse training by choosing a data aware subnetwork before training, based on the model-parameter's saliency scores, which is calculated from the local client data. Moreover only highly sparse gradients are transmitted between the server and client models during the training process unlike most methods that rely on sharing the entire dense model in each round. We also demonstrate the efficacy of our method in a real world federated learning application and report improvement in wall-clock communication time.

Jingyu Liu, Wenhan Xiong, Ian Jones et al.

Indoor scene synthesis involves automatically picking and placing furniture appropriately on a floor plan, so that the scene looks realistic and is functionally plausible. Such scenes can serve as homes for immersive 3D experiences, or be used to train embodied agents. Existing methods for this task rely on labeled categories of furniture, e.g. bed, chair or table, to generate contextually relevant combinations of furniture. Whether heuristic or learned, these methods ignore instance-level visual attributes of objects, and as a result may produce visually less coherent scenes. In this paper, we introduce an auto-regressive scene model which can output instance-level predictions, using general purpose image embedding based on CLIP. This allows us to learn visual correspondences such as matching color and style, and produce more functionally plausible and aesthetically pleasing scenes. Evaluated on the 3D-FRONT dataset, our model achieves SOTA results in scene synthesis and improves auto-completion metrics by over 50%. Moreover, our embedding-based approach enables zero-shot text-guided scene synthesis and editing, which easily generalizes to furniture not seen during training.

Bishal Thapaliya, Esra Akbas, Jiayu Chen et al.

Resting-state functional magnetic resonance imaging (rsfMRI) is a powerful tool for investigating the relationship between brain function and cognitive processes as it allows for the functional organization of the brain to be captured without relying on a specific task or stimuli. In this paper, we present a novel modeling architecture called BrainRGIN for predicting intelligence (fluid, crystallized, and total intelligence) using graph neural networks on rsfMRI derived static functional network connectivity matrices. Extending from the existing graph convolution networks, our approach incorporates a clustering-based embedding and graph isomorphism network in the graph convolutional layer to reflect the nature of the brain sub-network organization and efficient network expression, in combination with TopK pooling and attention-based readout functions. We evaluated our proposed architecture on a large dataset, specifically the Adolescent Brain Cognitive Development Dataset, and demonstrated its effectiveness in predicting individual differences in intelligence. Our model achieved lower mean squared errors and higher correlation scores than existing relevant graph architectures and other traditional machine learning models for all of the intelligence prediction tasks. The middle frontal gyrus exhibited a significant contribution to both fluid and crystallized intelligence, suggesting their pivotal role in these cognitive processes. Total composite scores identified a diverse set of brain regions to be relevant which underscores the complex nature of total intelligence.

Mingze Gao, Jingyu Liu, Mingda Li et al.

Multimodal Large Language Models (MLLMs) have significantly improved performance across various image-language applications. Recently, there has been a growing interest in adapting image pre-trained MLLMs for video-related tasks. However, most efforts concentrate on enhancing the vision encoder and projector components, while the core part, Large Language Models (LLMs), remains comparatively under-explored. In this paper, we propose two strategies to enhance the model's capability in video understanding tasks by improving inter-layer attention computation in LLMs. Specifically, the first approach focuses on the enhancement of Rotary Position Embedding (RoPE) with Temporal-Aware Dual RoPE, which introduces temporal position information to strengthen the MLLM's temporal modeling capabilities while preserving the relative position relationships of both visual and text tokens. The second approach involves enhancing the Attention Mask with the Frame-wise Block Causal Attention Mask, a simple yet effective method that broadens visual token interactions within and across video frames while maintaining the causal inference mechanism. Based on these proposed methods, we adapt LLaVA for video understanding tasks, naming it Temporal-Considered LLaVA (TC-LLaVA). Our TC-LLaVA achieves new state-of-the-art performance across various video understanding benchmarks with only supervised fine-tuning (SFT) on video-related datasets.

Jie Lian, Jingyu Liu, Shu Zhang et al.

Instance level detection and segmentation of thoracic diseases or abnormalities are crucial for automatic diagnosis in chest X-ray images. Leveraging on constant structure and disease relations extracted from domain knowledge, we propose a structure-aware relation network (SAR-Net) extending Mask R-CNN. The SAR-Net consists of three relation modules: 1. the anatomical structure relation module encoding spatial relations between diseases and anatomical parts. 2. the contextual relation module aggregating clues based on query-key pair of disease RoI and lung fields. 3. the disease relation module propagating co-occurrence and causal relations into disease proposals. Towards making a practical system, we also provide ChestX-Det, a chest X-Ray dataset with instance-level annotations (boxes and masks). ChestX-Det is a subset of the public dataset NIH ChestX-ray14. It contains ~3500 images of 13 common disease categories labeled by three board-certified radiologists. We evaluate our SAR-Net on it and another dataset DR-Private. Experimental results show that it can enhance the strong baseline of Mask R-CNN with significant improvements. The ChestX-Det is released at https://github.com/Deepwise-AILab/ChestX-Det-Dataset.

Jie Lian, Jingyu Liu, Yizhou Yu et al.

The detection of thoracic abnormalities challenge is organized by the Deepwise AI Lab. The challenge is divided into two rounds. In this paper, we present the results of 6 teams which reach the second round. The challenge adopts the ChestX-Det10 dateset proposed by the Deepwise AI Lab. ChestX-Det10 is the first chest X-Ray dataset with instance-level annotations, including 10 categories of disease/abnormality of 3,543 images. The annotations are located at https://github.com/Deepwise-AILab/ChestX-Det10-Dataset. In the challenge, we randomly split all data into 3001 images for training and 542 images for testing.

Jingyu Liu, Jie Lian, Yizhou Yu

Instance level detection of thoracic diseases or abnormalities are crucial for automatic diagnosis in chest X-ray images. Most existing works on chest X-rays focus on disease classification and weakly supervised localization. In order to push forward the research on disease classification and localization on chest X-rays. We provide a new benchmark called ChestX-Det10, including box-level annotations of 10 categories of disease/abnormality of $\sim$ 3,500 images. The annotations are located at https://github.com/Deepwise-AILab/ChestX-Det10-Dataset.

Bishal Thapaliya, Robyn Miller, Jiayu Chen et al.

Resting-state functional magnetic resonance imaging (rs-fMRI) is a noninvasive technique pivotal for understanding human neural mechanisms of intricate cognitive processes. Most rs-fMRI studies compute a single static functional connectivity matrix across brain regions of interest, or dynamic functional connectivity matrices with a sliding window approach. These approaches are at risk of oversimplifying brain dynamics and lack proper consideration of the goal at hand. While deep learning has gained substantial popularity for modeling complex relational data, its application to uncovering the spatiotemporal dynamics of the brain is still limited. We propose a novel interpretable deep learning framework that learns goal-specific functional connectivity matrix directly from time series and employs a specialized graph neural network for the final classification. Our model, DSAM, leverages temporal causal convolutional networks to capture the temporal dynamics in both low- and high-level feature representations, a temporal attention unit to identify important time points, a self-attention unit to construct the goal-specific connectivity matrix, and a novel variant of graph neural network to capture the spatial dynamics for downstream classification. To validate our approach, we conducted experiments on the Human Connectome Project dataset with 1075 samples to build and interpret the model for the classification of sex group, and the Adolescent Brain Cognitive Development Dataset with 8520 samples for independent testing. Compared our proposed framework with other state-of-art models, results suggested this novel approach goes beyond the assumption of a fixed connectivity matrix and provides evidence of goal-specific brain connectivity patterns, which opens up the potential to gain deeper insights into how the human brain adapts its functional connectivity specific to the task at hand.

Jingyu Liu, Jingquan Peng, xiaopeng Wu et al.

Despite the widespread application of Large Language Models (LLMs) across various domains, they frequently exhibit overconfidence when encountering uncertain scenarios, yet existing solutions primarily rely on evasive responses (e.g., "I don't know") overlooks the opportunity of identifying and addressing the uncertainty to generate more satisfactory responses. To systematically investigate and improve LLMs' ability of recognizing and addressing the source of uncertainty, we introduce \textbf{ConfuseBench}, a benchmark mainly focus on three types of uncertainty: document scarcity, limited capability, and query ambiguity. Experiments with ConfuseBench reveal that current LLMs struggle to accurately identify the root cause of uncertainty and solve it. They prefer to attribute uncertainty to query ambiguity while overlooking capability limitations, especially for those weaker models. To tackle this challenge, we first generate context-aware inquiries that highlight the confusing aspect of the original query. Then we judge the source of uncertainty based on the uniqueness of the inquiry's answer. Further we use an on-policy training method, InteractDPO to generate better inquiries. Experimental results demonstrate the efficacy of our approach.

Jingyu Liu, Xiaopeng Wu, Jingquan Peng et al.

Building autonomous agents capable of solving long-horizon, real-world tasks has garnered significant research interest. But outcome based rewards may cause reward miscalibration which means it might mistakenly allocate positive reward to flawed middle steps which is regarded as the key reason making the bad actions being reinforced during training. However we reveal that outcome based reward ensures expected negative advantage for those flawed middle steps, which means the flawed actions should be punished during training. Even accounting for the ``squeezing effect", the probability mass of good actions should increase and the actor should gradually get rid of harmful actions. This shows that flawed actions should be punished during training. We further identify gradient coupling between similar samples as a key issue in agentic RL, the input prompt is extremely similar and the output action space is limited, therefore during training, gradients from well-performing samples can inadvertently strengthen suboptimal or incorrect actions due to similar input observation and output actions. We show that with gradient coupling, some flawed actions might be enhanced. To address this, we propose training the actor to classify good or bad actions to separate the embedding of good/bad actions and alleviate the gradient interference, extensive experiments shows its effectiveness.

Sepehr Salem, M. Moein Esfahani, Jingyu Liu et al.

Data scarcity hinders deep learning for medical imaging. We propose a framework for breast cancer classification in thermograms that addresses this using a Diffusion Probabilistic Model (DPM) for data augmentation. Our DPM-based augmentation is shown to be superior to both traditional methods and a ProGAN baseline. The framework fuses deep features from a pre-trained ResNet-50 with handcrafted nonlinear features (e.g., Fractal Dimension) derived from U-Net segmented tumors. An XGBoost classifier trained on these fused features achieves 98.0\% accuracy and 98.1\% sensitivity. Ablation studies and statistical tests confirm that both the DPM augmentation and the nonlinear feature fusion are critical, statistically significant components of this success. This work validates the synergy between advanced generative models and interpretable features for creating highly accurate medical diagnostic tools.

Peng Yang, Zhengdong Huang, Zicheng Xie et al.

Heart rate prediction is vital for personalized health monitoring and fitness, while it frequently faces a critical challenge when deploying in real-world: data heterogeneity. We classify it in two key dimensions: source heterogeneity from fragmented device markets with varying feature sets, and user heterogeneity reflecting distinct physiological patterns across individuals and activities. Existing methods either discard device-specific information, or fail to model user-specific differences, limiting their real-world performance. To address this, we propose a framework that learns latent representations agnostic to both heterogeneity, enabling downstream predictors to work consistently under heterogeneous data patterns. Specifically, we introduce a random feature dropout strategy to handle source heterogeneity, making the model robust to various feature sets. To manage user heterogeneity, we employ a time-aware attention module to capture long-term physiological traits and use a contrastive learning objective to build a discriminative representation space. To reflect the heterogeneous nature of real-world data, we created and publicly released a new benchmark dataset, ParroTao. Evaluations on both ParroTao and the public FitRec dataset show that our model significantly outperforms existing baselines by 17% and 15%, respectively. Furthermore, analysis of the learned representations demonstrates their strong discriminative power, and one downstream application task confirm the practical value of our model.

Zijian Gao, Jingyu Liu, Weiqi Sun et al.

Modern video-text retrieval frameworks basically consist of three parts: video encoder, text encoder and the similarity head. With the success on both visual and textual representation learning, transformer based encoders and fusion methods have also been adopted in the field of video-text retrieval. In this report, we present CLIP2TV, aiming at exploring where the critical elements lie in transformer based methods. To achieve this, We first revisit some recent works on multi-modal learning, then introduce some techniques into video-text retrieval, finally evaluate them through extensive experiments in different configurations. Notably, CLIP2TV achieves 52.9@R1 on MSR-VTT dataset, outperforming the previous SOTA result by 4.1%.

Zijian Gao, Huanyu Liu, Jingyu Liu

The current state-of-the-art methods for video corpus moment retrieval (VCMR) often use similarity-based feature alignment approach for the sake of convenience and speed. However, late fusion methods like cosine similarity alignment are unable to make full use of the information from both query texts and videos. In this paper, we combine feature alignment with feature fusion to promote the performance on VCMR.

Haleh Falakshahi, Victor M. Vergara, Jingyu Liu et al.

Objective: Multimodal measurements of the same phenomena provide complementary information and highlight different perspectives, albeit each with their own limitations. A focus on a single modality may lead to incorrect inferences, which is especially important when a studied phenomenon is a disease. In this paper, we introduce a method that takes advantage of multimodal data in addressing the hypotheses of disconnectivity and dysfunction within schizophrenia (SZ). Methods: We start with estimating and visualizing links within and among extracted multimodal data features using a Gaussian graphical model (GGM). We then propose a modularity-based method that can be applied to the GGM to identify links that are associated with mental illness across a multimodal data set. Through simulation and real data, we show our approach reveals important information about disease-related network disruptions that are missed with a focus on a single modality. We use functional MRI (fMRI), diffusion MRI (dMRI), and structural MRI (sMRI) to compute the fractional amplitude of low frequency fluctuations (fALFF), fractional anisotropy (FA), and gray matter (GM) concentration maps. These three modalities are analyzed using our modularity method. Results: Our results show missing links that are only captured by the cross-modal information that may play an important role in disconnectivity between the components. Conclusion: We identified multimodal (fALFF, FA and GM) disconnectivity in the default mode network area in patients with SZ, which would not have been detectable in a single modality. Significance: The proposed approach provides an important new tool for capturing information that is distributed among multiple imaging modalities.