2.0LGSep 8, 2023
3D Denoisers are Good 2D Teachers: Molecular Pretraining via Denoising and Cross-Modal DistillationSungjun Cho, Dae-Woong Jeong, Sung Moon Ko et al.
Pretraining molecular representations from large unlabeled data is essential for molecular property prediction due to the high cost of obtaining ground-truth labels. While there exist various 2D graph-based molecular pretraining approaches, these methods struggle to show statistically significant gains in predictive performance. Recent work have thus instead proposed 3D conformer-based pretraining under the task of denoising, which led to promising results. During downstream finetuning, however, models trained with 3D conformers require accurate atom-coordinates of previously unseen molecules, which are computationally expensive to acquire at scale. In light of this limitation, we propose D&D, a self-supervised molecular representation learning framework that pretrains a 2D graph encoder by distilling representations from a 3D denoiser. With denoising followed by cross-modal knowledge distillation, our approach enjoys use of knowledge obtained from denoising as well as painless application to downstream tasks with no access to accurate conformers. Experiments on real-world molecular property prediction datasets show that the graph encoder trained via D&D can infer 3D information based on the 2D graph and shows superior performance and label-efficiency against other baselines.
Learning Symmetrization for Equivariance with Orbit Distance MinimizationTien Dat Nguyen, Jinwoo Kim, Hongseok Yang et al.
We present a general framework for symmetrizing an arbitrary neural-network architecture and making it equivariant with respect to a given group. We build upon the proposals of Kim et al. (2023); Kaba et al. (2023) for symmetrization, and improve them by replacing their conversion of neural features into group representations, with an optimization whose loss intuitively measures the distance between group orbits. This change makes our approach applicable to a broader range of matrix groups, such as the Lorentz group O(1, 3), than these two proposals. We experimentally show our method's competitiveness on the SO(2) image classification task, and also its increased generality on the task with O(1, 3). Our implementation will be made accessible at https://github.com/tiendatnguyen-vision/Orbit-symmetrize.
4.6LGAug 24, 2024
MPruner: Optimizing Neural Network Size with CKA-Based Mutual Information PruningSeungbeom Hu, ChanJun Park, Andrew Ferraiuolo et al.
Determining the optimal size of a neural network is critical, as it directly impacts runtime performance and memory usage. Pruning is a well-established model compression technique that reduces the size of neural networks while mathematically guaranteeing accuracy preservation. However, many recent pruning methods overlook the global contributions of individual model components, making it difficult to ensure that a pruned model meets the desired dataset and performance requirements. To address these challenges, we developed a new pruning algorithm, MPruner, that leverages mutual information through vector similarity. MPruner utilizes layer clustering with the Centered Kernel Alignment (CKA) similarity metric, allowing us to incorporate global information from the neural network for more precise and efficient layer-wise pruning. We evaluated MPruner across various architectures and configurations, demonstrating its versatility and providing practical guidelines. MPruner achieved up to a 50% reduction in parameters and memory usage for CNN and transformer-based models, with minimal to no loss in accuracy.
8.3CLAug 20, 2025
DocHop-QA: Towards Multi-Hop Reasoning over Multimodal Document CollectionsJiwon Park, Seohyun Pyeon, Jinwoo Kim et al.
Despite recent advances in large language models (LLMs), most QA benchmarks are still confined to single-paragraph or single-document settings, failing to capture the complexity of real-world information-seeking tasks. Practical QA often requires multi-hop reasoning over information distributed across multiple documents, modalities, and structural formats. Although prior datasets made progress in this area, they rely heavily on Wikipedia-based content and unimodal plain text, with shallow reasoning paths that typically produce brief phrase-level or single-sentence answers, thus limiting their realism and generalizability. We propose DocHop-QA, a large-scale benchmark comprising 11,379 QA instances for multimodal, multi-document, multi-hop question answering. Constructed from publicly available scientific documents sourced from PubMed, DocHop-QA is domain-agnostic and incorporates diverse information formats, including textual passages, tables, and structural layout cues. Unlike existing datasets, DocHop-QA does not rely on explicitly hyperlinked documents; instead, it supports open-ended reasoning through semantic similarity and layout-aware evidence synthesis. To scale realistic QA construction, we designed an LLM-driven pipeline grounded in 11 high-frequency scientific question concepts. We evaluated DocHop-QA through four tasks spanning structured index prediction, generative answering, and multimodal integration, reflecting both discriminative and generative paradigms. These tasks demonstrate DocHop-QA's capacity to support complex, multimodal reasoning across multiple documents.