Chengyue Gong

Shujian Zhang, Chengyue Gong, Xingchao Liu et al. · microsoft-research

Active learning, which effectively collects informative unlabeled data for annotation, reduces the demand for labeled data. In this work, we propose to retrieve unlabeled samples with a local sensitivity and hardness-aware acquisition function. The proposed method generates data copies through local perturbations and selects data points whose predictive likelihoods diverge the most from their copies. We further empower our acquisition function by injecting the select-worst case perturbation. Our method achieves consistent gains over the commonly used active learning strategies in various classification tasks. Furthermore, we observe consistent improvements over the baselines on the study of prompt selection in prompt-based few-shot learning. These experiments demonstrate that our acquisition guided by local sensitivity and hardness can be effective and beneficial for many NLP tasks.

Xingchao Liu, Chengyue Gong, Qiang Liu

We present rectified flow, a surprisingly simple approach to learning (neural) ordinary differential equation (ODE) models to transport between two empirically observed distributions π_0 and π_1, hence providing a unified solution to generative modeling and domain transfer, among various other tasks involving distribution transport. The idea of rectified flow is to learn the ODE to follow the straight paths connecting the points drawn from π_0 and π_1 as much as possible. This is achieved by solving a straightforward nonlinear least squares optimization problem, which can be easily scaled to large models without introducing extra parameters beyond standard supervised learning. The straight paths are special and preferred because they are the shortest paths between two points, and can be simulated exactly without time discretization and hence yield computationally efficient models. We show that the procedure of learning a rectified flow from data, called rectification, turns an arbitrary coupling of π_0 and π_1 to a new deterministic coupling with provably non-increasing convex transport costs. In addition, recursively applying rectification allows us to obtain a sequence of flows with increasingly straight paths, which can be simulated accurately with coarse time discretization in the inference phase. In empirical studies, we show that rectified flow performs superbly on image generation, image-to-image translation, and domain adaptation. In particular, on image generation and translation, our method yields nearly straight flows that give high quality results even with a single Euler discretization step.

Lemeng Wu, Chengyue Gong, Xingchao Liu et al.

AI-based molecule generation provides a promising approach to a large area of biomedical sciences and engineering, such as antibody design, hydrolase engineering, or vaccine development. Because the molecules are governed by physical laws, a key challenge is to incorporate prior information into the training procedure to generate high-quality and realistic molecules. We propose a simple and novel approach to steer the training of diffusion-based generative models with physical and statistics prior information. This is achieved by constructing physically informed diffusion bridges, stochastic processes that guarantee to yield a given observation at the fixed terminal time. We develop a Lyapunov function based method to construct and determine bridges, and propose a number of proposals of informative prior bridges for both high-quality molecule generation and uniformity-promoted 3D point cloud generation. With comprehensive experiments, we show that our method provides a powerful approach to the 3D generation task, yielding molecule structures with better quality and stability scores and more uniformly distributed point clouds of high qualities.

Cong Liu, Milong Ren, Jiaqi Guan et al.

Recent advances in de novo protein binder design have enabled increasing experimental validation, yet reported in silico metrics remain difficult to interpret or compare across studies due to non-standardized evaluation protocols. We introduce ProtDBench, a standardized and throughput-aware evaluation framework for protein binder design. ProtDBench defines unified benchmark tasks, evaluation protocols, and success criteria, enabling systematic analysis of how evaluation design influences observed performance. Using a large wet-lab annotated dataset, we analyze commonly used structure prediction models as evaluation verifiers, revealing substantial verifier-dependent bias and limited agreement under identical filtering protocols. We then benchmark representative open-source generative binder design methods across ten diverse protein targets under a fixed evaluation protocol. Beyond per-sequence success rates, ProtDBench incorporates throughput-aware metrics based on a fixed 24-hour budget, as well as cluster-level success criteria to account for structural diversity. Together, these results expose systematic differences induced by filtering rules, success definitions, and throughput-aware evaluation between computational efficiency, success rate, and structural diversity. Overall, ProtDBench provides a fair and reproducible evaluation pipeline that supports systematic and controlled comparison of protein binder design methods under realistic evaluation settings.

Lemeng Wu, Dilin Wang, Chengyue Gong et al.

Diffusion models have emerged as a powerful tool for point cloud generation. A key component that drives the impressive performance for generating high-quality samples from noise is iteratively denoise for thousands of steps. While beneficial, the complexity of learning steps has limited its applications to many 3D real-world. To address this limitation, we propose Point Straight Flow (PSF), a model that exhibits impressive performance using one step. Our idea is based on the reformulation of the standard diffusion model, which optimizes the curvy learning trajectory into a straight path. Further, we develop a distillation strategy to shorten the straight path into one step without a performance loss, enabling applications to 3D real-world with latency constraints. We perform evaluations on multiple 3D tasks and find that our PSF performs comparably to the standard diffusion model, outperforming other efficient 3D point cloud generation methods. On real-world applications such as point cloud completion and training-free text-guided generation in a low-latency setup, PSF performs favorably.

Shujian Zhang, Chengyue Gong, Xingchao Liu

Retriever-reader models achieve competitive performance across many different NLP tasks such as open question answering and dialogue conversations. In this work, we notice these models easily overfit the top-rank retrieval passages and standard training fails to reason over the entire retrieval passages. We introduce a learnable passage mask mechanism which desensitizes the impact from the top-rank retrieval passages and prevents the model from overfitting. Controlling the gradient variance with fewer mask candidates and selecting the mask candidates with one-shot bi-level optimization, our learnable regularization strategy enforces the answer generation to focus on the entire retrieval passages. Experiments on different tasks across open question answering, dialogue conversation, and fact verification show that our method consistently outperforms its baselines. Extensive experiments and ablation studies demonstrate that our method can be general, effective, and beneficial for many NLP tasks.

Chengyue Gong, Xinshi Chen, Yuxuan Zhang et al.

Lightweight inference is critical for biomolecular structure prediction and other downstream tasks, enabling efficient real-world deployment and inference-time scaling for large-scale applications. In this work, we address the challenge of balancing model efficiency and prediction accuracy by making several key modifications, 1) Multi-step AF3 sampler is replaced by a few-step ODE sampler, significantly reducing computational overhead for the diffusion module part during inference; 2) In the open-source Protenix framework, a subset of pairformer or diffusion transformer blocks doesn't make contributions to the final structure prediction, presenting opportunities for architectural pruning and lightweight redesign; 3) A model incorporating an ESM module is trained to substitute the conventional MSA module, reducing MSA preprocessing time. Building on these key insights, we present Protenix-Mini, a compact and optimized model designed for efficient protein structure prediction. This streamlined version incorporates a more efficient architectural design with a two-step Ordinary Differential Equation (ODE) sampling strategy. By eliminating redundant Transformer components and refining the sampling process, Protenix-Mini significantly reduces model complexity with slight accuracy drop. Evaluations on benchmark datasets demonstrate that it achieves high-fidelity predictions, with only a negligible 1 to 5 percent decrease in performance on benchmark datasets compared to its full-scale counterpart. This makes Protenix-Mini an ideal choice for applications where computational resources are limited but accurate structure prediction remains crucial.

Xingchao Liu, Chengyue Gong, Lemeng Wu et al.

Generating images from natural language instructions is an intriguing yet highly challenging task. We approach text-to-image generation by combining the power of the retrained CLIP representation with an off-the-shelf image generator (GANs), optimizing in the latent space of GAN to find images that achieve maximum CLIP score with the given input text. Compared to traditional methods that train generative models from text to image starting from scratch, the CLIP+GAN approach is training-free, zero shot and can be easily customized with different generators. However, optimizing CLIP score in the GAN space casts a highly challenging optimization problem and off-the-shelf optimizers such as Adam fail to yield satisfying results. In this work, we propose a FuseDream pipeline, which improves the CLIP+GAN approach with three key techniques: 1) an AugCLIP score which robustifies the CLIP objective by introducing random augmentation on image. 2) a novel initialization and over-parameterization strategy for optimization which allows us to efficiently navigate the non-convex landscape in GAN space. 3) a composed generation technique which, by leveraging a novel bi-level optimization formulation, can compose multiple images to extend the GAN space and overcome the data-bias. When promoted by different input text, FuseDream can generate high-quality images with varying objects, backgrounds, artistic styles, even novel counterfactual concepts that do not appear in the training data of the GAN we use. Quantitatively, the images generated by FuseDream yield top-level Inception score and FID score on MS COCO dataset, without additional architecture design or training. Our code is publicly available at \url{https://github.com/gnobitab/FuseDream}.

Chengyue Gong, Dilin Wang, Meng Li et al.

Vision transformer has demonstrated promising performance on challenging computer vision tasks. However, directly training the vision transformers may yield unstable and sub-optimal results. Recent works propose to improve the performance of the vision transformers by modifying the transformer structures, e.g., incorporating convolution layers. In contrast, we investigate an orthogonal approach to stabilize the vision transformer training without modifying the networks. We observe the instability of the training can be attributed to the significant similarity across the extracted patch representations. More specifically, for deep vision transformers, the self-attention blocks tend to map different patches into similar latent representations, yielding information loss and performance degradation. To alleviate this problem, in this work, we introduce novel loss functions in vision transformer training to explicitly encourage diversity across patch representations for more discriminative feature extraction. We empirically show that our proposed techniques stabilize the training and allow us to train wider and deeper vision transformers. We further show the diversified features significantly benefit the downstream tasks in transfer learning. For semantic segmentation, we enhance the state-of-the-art (SOTA) results on Cityscapes and ADE20k. Our code is available at https://github.com/ChengyueGongR/PatchVisionTransformer.

Dilin Wang, Chengyue Gong, Meng Li et al.

Weight-sharing neural architecture search (NAS) is an effective technique for automating efficient neural architecture design. Weight-sharing NAS builds a supernet that assembles all the architectures as its sub-networks and jointly trains the supernet with the sub-networks. The success of weight-sharing NAS heavily relies on distilling the knowledge of the supernet to the sub-networks. However, we find that the widely used distillation divergence, i.e., KL divergence, may lead to student sub-networks that over-estimate or under-estimate the uncertainty of the teacher supernet, leading to inferior performance of the sub-networks. In this work, we propose to improve the supernet training with a more generalized alpha-divergence. By adaptively selecting the alpha-divergence, we simultaneously prevent the over-estimation or under-estimation of the uncertainty of the teacher model. We apply the proposed alpha-divergence based supernets training to both slimmable neural networks and weight-sharing NAS, and demonstrate significant improvements. Specifically, our discovered model family, AlphaNet, outperforms prior-art models on a wide range of FLOPs regimes, including BigNAS, Once-for-All networks, and AttentiveNAS. We achieve ImageNet top-1 accuracy of 80.0% with only 444M FLOPs. Our code and pretrained models are available at https://github.com/facebookresearch/AlphaNet.

Dilin Wang, Meng Li, Chengyue Gong et al.

Neural architecture search (NAS) has shown great promise in designing state-of-the-art (SOTA) models that are both accurate and efficient. Recently, two-stage NAS, e.g. BigNAS, decouples the model training and searching process and achieves remarkable search efficiency and accuracy. Two-stage NAS requires sampling from the search space during training, which directly impacts the accuracy of the final searched models. While uniform sampling has been widely used for its simplicity, it is agnostic of the model performance Pareto front, which is the main focus in the search process, and thus, misses opportunities to further improve the model accuracy. In this work, we propose AttentiveNAS that focuses on improving the sampling strategy to achieve better performance Pareto. We also propose algorithms to efficiently and effectively identify the networks on the Pareto during training. Without extra re-training or post-processing, we can simultaneously obtain a large number of networks across a wide range of FLOPs. Our discovered model family, AttentiveNAS models, achieves top-1 accuracy from 77.3% to 80.7% on ImageNet, and outperforms SOTA models, including BigNAS and Once-for-All networks. We also achieve ImageNet accuracy of 80.1% with only 491 MFLOPs. Our training code and pretrained models are available at https://github.com/facebookresearch/AttentiveNAS.

Cong Liu, Chengyue Gong, Zhenyu Liu et al.

Generative models hold great promise for accelerating material discovery but are often limited by their inflexible single-stage generative process in designing valid and diverse materials. To address this, we propose a two-stage generative framework, Lang2Str, that combines the strengths of large language models (LLMs) and flow-based models for flexible and precise material generation. Our method frames the generative process as a conditional generative task, where an LLM provides high-level conditions by generating descriptions of material unit cells' geometric layouts and properties. These descriptions, informed by the LLM's extensive background knowledge, ensure reasonable structure designs. A conditioned flow model then decodes these textual conditions into precise continuous coordinates and unit cell parameters. This staged approach combines the structured reasoning of LLMs and the distribution modeling capabilities of flow models. Experimental results show that our method achieves competitive performance on \textit{ab initio} material generation and crystal structure prediction tasks, with generated structures exhibiting closer alignment to ground truth in both geometry and energy levels, surpassing state-of-the-art models. The flexibility and modularity of our framework further enable fine-grained control over the generation process, potentially leading to more efficient and customizable material design.

Chaoran Cheng, Jiaqi Guan, Milong Ren et al.

We present A-CODE, a fully atomic unified one-stage protein co-design model that simultaneously refines discrete atom types and continuous atom coordinates. Unlike predominant two-stage methods that cascade structure design with amino acid-level sequence design, our approach is fully atomic within a unified multimodal diffusion framework, in which residue identities are inferred solely from atom-level predictions. Built upon the powerful all-atom architecture, A-CODE achieves superior designability for unconditional protein generation, outperforming all existing one-stage and two-stage design models. For binder design, A-CODE rivals and even outperforms existing state-of-the-art two-stage design models and, compared with the existing one-stage co-design model, achieves a drastic tenfold improvement in success rate on hard tasks. The inherent flexibility of our atomic formulation enables, for the first time, seamless adaptation to non-canonical amino acid (ncAA) modeling. Our fully atomic framework establishes a new, versatile foundation for all-atom generative modeling that can be naturally extended to complex biomolecular systems.

Bo Chen, Chengyue Gong, Xiaoyu Li et al.

One-step shortcut diffusion models [Frans, Hafner, Levine and Abbeel, ICLR 2025] have shown potential in vision generation, but their reliance on first-order trajectory supervision is fundamentally limited. The Shortcut model's simplistic velocity-only approach fails to capture intrinsic manifold geometry, leading to erratic trajectories, poor geometric alignment, and instability-especially in high-curvature regions. These shortcomings stem from its inability to model mid-horizon dependencies or complex distributional features, leaving it ill-equipped for robust generative modeling. In this work, we introduce HOMO (High-Order Matching for One-Step Shortcut Diffusion), a game-changing framework that leverages high-order supervision to revolutionize distribution transportation. By incorporating acceleration, jerk, and beyond, HOMO not only fixes the flaws of the Shortcut model but also achieves unprecedented smoothness, stability, and geometric precision. Theoretically, we prove that HOMO's high-order supervision ensures superior approximation accuracy, outperforming first-order methods. Empirically, HOMO dominates in complex settings, particularly in high-curvature regions where the Shortcut model struggles. Our experiments show that HOMO delivers smoother trajectories and better distributional alignment, setting a new standard for one-step generative models.

Chengyue Gong, Yekun Ke, Xiaoyu Li et al.

The expressive power and computational complexity of deep visual generative models, such as flow-based and autoregressive (AR) models, have gained considerable interest for their wide-ranging applications in generative tasks. However, the theoretical characterization of their expressiveness through the lens of circuit complexity remains underexplored, particularly for the state-of-the-art architecture like FlowAR proposed by [Ren et al., 2024], which integrates flow-based and autoregressive mechanisms. This gap limits our understanding of their inherent computational limits and practical efficiency. In this study, we address this gap by analyzing the circuit complexity of the FlowAR architecture. We demonstrate that when the largest feature map produced by the FlowAR model has dimensions $n \times n \times c$, the FlowAR model is simulable by a family of threshold circuits $\mathsf{TC}^0$, which have constant depth $O(1)$ and polynomial width $\mathrm{poly}(n)$. This is the first study to rigorously highlight the limitations in the expressive power of FlowAR models. Furthermore, we identify the conditions under which the FlowAR model computations can achieve almost quadratic time. To validate our theoretical findings, we present efficient model variant constructions based on low-rank approximations that align with the derived criteria. Our work provides a foundation for future comparisons with other generative paradigms and guides the development of more efficient and expressive implementations.

Chengyue Gong, Xiaoyu Li, Yingyu Liang et al.

Flow matching has emerged as a powerful framework for generative modeling, offering computational advantages over diffusion models by leveraging deterministic Ordinary Differential Equations (ODEs) instead of stochastic dynamics. While prior work established the worst case optimality of standard flow matching under Wasserstein distances, the theoretical guarantees for higher-order flow matching - which incorporates acceleration terms to refine sample trajectories - remain unexplored. In this paper, we bridge this gap by proving that higher-order flow matching preserves worst case optimality as a distribution estimator. We derive upper bounds on the estimation error for second-order flow matching, demonstrating that the convergence rates depend polynomially on the smoothness of the target distribution (quantified via Besov spaces) and key parameters of the ODE dynamics. Our analysis employs neural network approximations with carefully controlled depth, width, and sparsity to bound acceleration errors across both small and large time intervals, ultimately unifying these results into a general worst case optimal bound for all time steps.

Yuefan Cao, Chengyue Gong, Xiaoyu Li et al.

Text-to-video generation models have made impressive progress, but they still struggle with generating videos with complex features. This limitation often arises from the inability of the text encoder to produce accurate embeddings, which hinders the video generation model. In this work, we propose a novel approach to overcome this challenge by selecting the optimal text embedding through interpolation in the embedding space. We demonstrate that this method enables the video generation model to produce the desired videos. Additionally, we introduce a simple algorithm using perpendicular foot embeddings and cosine similarity to identify the optimal interpolation embedding. Our findings highlight the importance of accurate text embeddings and offer a pathway for improving text-to-video generation performance.

Daiheng Zhang, Chengyue Gong, Qiang Liu

Deep generative models have achieved tremendous success in structure-based drug design in recent years, especially for generating 3D ligand molecules that bind to specific protein pocket. Notably, diffusion models have transformed ligand generation by providing exceptional quality and creativity. However, traditional diffusion models are restricted by their conventional learning objectives, which limit their broader applicability. In this work, we propose a new framework FlowSBDD, which is based on rectified flow model, allows us to flexibly incorporate additional loss to optimize specific target and introduce additional condition either as an extra input condition or replacing the initial Gaussian distribution. Extensive experiments on CrossDocked2020 show that our approach could achieve state-of-the-art performance on generating high-affinity molecules while maintaining proper molecular properties without specifically designing binding site, with up to -8.50 Avg. Vina Dock score and 75.0% Diversity.

Shujian Zhang, Lemeng Wu, Chengyue Gong et al.

Recent works have demonstrated success in controlling sentence attributes ($e.g.$, sentiment) and structure ($e.g.$, syntactic structure) based on the diffusion language model. A key component that drives theimpressive performance for generating high-quality samples from noise is iteratively denoise for thousands of steps. While beneficial, the complexity of starting from the noise and the learning steps has limited its implementation to many NLP real-world applications. This paper proposes Language Rectified Flow ({\ours}). Our method is based on the reformulation of the standard probabilistic flow models. Language rectified flow learns (neural) ordinary differential equation models to transport between the source distribution and the target distribution, hence providing a unified and effective solution to generative modeling and domain transfer. From the source distribution, our language rectified flow yields fast simulation and effectively decreases the inference time. Experiments on three challenging fine-grained control tasks and multiple high-quality text editing show that our method consistently outperforms its baselines. Extensive experiments and ablation studies demonstrate that our method can be general, effective, and beneficial for many NLP tasks.

Jiale Zhao, Cong Liu, Yuxuan Zhang et al.

Determining crystal structures from X-ray diffraction data is fundamental across diverse scientific fields, yet remains a significant challenge when data is limited to low resolution. While recent deep learning models have made breakthroughs in solving the crystallographic phase problem, the resulting low-resolution electron density maps are often ambiguous and difficult to interpret. To overcome this critical bottleneck, we introduce XDXD, to our knowledge, the first end-to-end deep learning framework to determine a complete atomic model directly from low-resolution single-crystal X-ray diffraction data. Our diffusion-based generative model bypasses the need for manual map interpretation, producing chemically plausible crystal structures conditioned on the diffraction pattern. We demonstrate that XDXD achieves a 70.4\% match rate for structures with data limited to 2.0~Å resolution, with a root-mean-square error (RMSE) below 0.05. Evaluated on a benchmark of 24,000 experimental structures, our model proves to be robust and accurate. Furthermore, a case study on small peptides highlights the model's potential for extension to more complex systems, paving the way for automated structure solution in previously intractable cases.

Bo Qiang, Chengyue Gong, Xinshi Chen et al.

Lightweight inference is critical for biomolecular structure prediction and downstream tasks, enabling efficient real-world deployment and inference-time scaling for large-scale applications. While AF3 and its variants (e.g., Protenix, Chai-1) have advanced structure prediction results, they suffer from critical limitations: high inference latency and cubic time complexity with respect to token count, both of which restrict scalability for large biomolecular complexes. To address the core challenge of balancing model efficiency and prediction accuracy, we introduce three key innovations: (1) compressing non-scalable operations to mitigate cubic time complexity, (2) removing redundant blocks across modules to reduce unnecessary overhead, and (3) adopting a few-step sampler for the atom diffusion module to accelerate inference. Building on these design principles, we develop Protenix-Mini+, a highly lightweight and scalable variant of the Protenix model. Within an acceptable range of performance degradation, it substantially improves computational efficiency. For example, in the case of low-homology single-chain proteins, Protenix-Mini+ experiences an intra-protein LDDT drop of approximately 3% relative to the full Protenix model -- an acceptable performance trade-off given its substantially 90%+ improved computational efficiency.

Shujian Zhang, Korawat Tanwisuth, Chengyue Gong et al.

Auto-regressive generation models achieve competitive performance across many different NLP tasks such as summarization, question answering, and classifications. However, they are also known for being slow in inference, which makes them challenging to deploy in real-time applications. We propose a switchable decision to accelerate inference by dynamically assigning computation resources for each data instance. Automatically making decisions on where to skip and how to balance quality and computation cost with constrained optimization, our dynamic neural generation networks enforce the efficient inference path and determine the optimized trade-off. Experiments across question answering, summarization, and classification benchmarks show that our method benefits from less computation cost during inference while keeping the same accuracy. Extensive experiments and ablation studies demonstrate that our method can be general, effective, and beneficial for many NLP tasks.

Shujian Zhang, Chengyue Gong, Lemeng Wu et al.

AI tasks encompass a wide range of domains and fields. While numerous AI models have been designed for specific tasks and applications, they often require considerable human efforts in finding the right model architecture, optimization algorithm, and hyperparameters. Recent advances in large language models (LLMs) like ChatGPT show remarkable capabilities in various aspects of reasoning, comprehension, and interaction. Consequently, we propose developing task-oriented prompts and automatically utilizing LLMs to automate the training pipeline. To implement this concept, we present the AutoML-GPT, which employs GPT as the bridge to diverse AI models and dynamically trains models with optimized hyperparameters. AutoML-GPT dynamically takes user requests from the model and data cards and composes the corresponding prompt paragraph. Ultimately, with this prompt paragraph, AutoML-GPT will automatically conduct the experiments from data processing to model architecture, hyperparameter tuning, and predicted training log. By leveraging {\ours}'s robust language capabilities and the available AI models, AutoML-GPT can tackle numerous intricate AI tasks across various tasks and datasets. This approach achieves remarkable results in computer vision, natural language processing, and other challenging areas. Extensive experiments and ablation studies demonstrate that our method can be general, effective, and beneficial for many AI tasks.

Chengyue Gong, Lemeng Wu, Qiang Liu

Although traditional optimization methods focus on finding a single optimal solution, most objective functions in modern machine learning problems, especially those in deep learning, often have multiple or infinite numbers of optima. Therefore, it is useful to consider the problem of finding a set of diverse points in the optimum set of an objective function. In this work, we frame this problem as a bi-level optimization problem of maximizing a diversity score inside the optimum set of the main loss function, and solve it with a simple population gradient descent framework that iteratively updates the points to maximize the diversity score in a fashion that does not hurt the optimization of the main loss. We demonstrate that our method can efficiently generate diverse solutions on a variety of applications, including text-to-image generation, text-to-mesh generation, molecular conformation generation and ensemble neural network training.

Shujian Zhang, Chengyue Gong, Eunsol Choi

Training NLP systems typically assumes access to annotated data that has a single human label per example. Given imperfect labeling from annotators and inherent ambiguity of language, we hypothesize that single label is not sufficient to learn the spectrum of language interpretation. We explore new annotation distribution schemes, assigning multiple labels per example for a small subset of training examples. Introducing such multi label examples at the cost of annotating fewer examples brings clear gains on natural language inference task and entity typing task, even when we simply first train with a single label data and then fine tune with multi label examples. Extending a MixUp data augmentation framework, we propose a learning algorithm that can learn from training examples with different amount of annotation (with zero, one, or multiple labels). This algorithm efficiently combines signals from uneven training data and brings additional gains in low annotation budget and cross domain settings. Together, our method achieves consistent gains in two tasks, suggesting distributing labels unevenly among training examples can be beneficial for many NLP tasks.

Shujian Zhang, Chengyue Gong, Eunsol Choi

We study calibration in question answering, estimating whether model correctly predicts answer for each question. Unlike prior work which mainly rely on the model's confidence score, our calibrator incorporates information about the input example (e.g., question and the evidence context). Together with data augmentation via back translation, our simple approach achieves 5-10% gains in calibration accuracy on reading comprehension benchmarks. Furthermore, we present the first calibration study in the open retrieval setting, comparing the calibration accuracy of retrieval-based span prediction models and answer generation models. Here again, our approach shows consistent gains over calibrators relying on the model confidence. Our simple and efficient calibrator can be easily adapted to many tasks and model architectures, showing robust gains in all settings.

Shujian Zhang, Chengyue Gong, Eunsol Choi

We study estimating inherent human disagreement (annotation label distribution) in natural language inference task. Post-hoc smoothing of the predicted label distribution to match the expected label entropy is very effective. Such simple manipulation can reduce KL divergence by almost half, yet will not improve majority label prediction accuracy or learn label distributions. To this end, we introduce a small amount of examples with multiple references into training. We depart from the standard practice of collecting a single reference per each training example, and find that collecting multiple references can achieve better accuracy under the fixed annotation budget. Lastly, we provide rich analyses comparing these two methods for improving label distribution estimation.

Chengyue Gong, Dilin Wang, Qiang Liu

Semi-supervised learning (SSL) is a key approach toward more data-efficient machine learning by jointly leverage both labeled and unlabeled data. We propose AlphaMatch, an efficient SSL method that leverages data augmentations, by efficiently enforcing the label consistency between the data points and the augmented data derived from them. Our key technical contribution lies on: 1) using alpha-divergence to prioritize the regularization on data with high confidence, achieving a similar effect as FixMatch but in a more flexible fashion, and 2) proposing an optimization-based, EM-like algorithm to enforce the consistency, which enjoys better convergence than iterative regularization procedures used in recent SSL methods such as FixMatch, UDA, and MixMatch. AlphaMatch is simple and easy to implement, and consistently outperforms prior arts on standard benchmarks, e.g. CIFAR-10, SVHN, CIFAR-100, STL-10. Specifically, we achieve 91.3% test accuracy on CIFAR-10 with just 4 labelled data per class, substantially improving over the previously best 88.7% accuracy achieved by FixMatch.

Chengyue Gong, Dilin Wang, Meng Li et al.

Data augmentation (DA) is an essential technique for training state-of-the-art deep learning systems. In this paper, we empirically show data augmentation might introduce noisy augmented examples and consequently hurt the performance on unaugmented data during inference. To alleviate this issue, we propose a simple yet highly effective approach, dubbed \emph{KeepAugment}, to increase augmented images fidelity. The idea is first to use the saliency map to detect important regions on the original images and then preserve these informative regions during augmentation. This information-preserving strategy allows us to generate more faithful training examples. Empirically, we demonstrate our method significantly improves on a number of prior art data augmentation schemes, e.g. AutoAugment, Cutout, random erasing, achieving promising results on image classification, semi-supervised image classification, multi-view multi-camera tracking and object detection.

Mao Ye, Chengyue Gong, Qiang Liu

State-of-the-art NLP models can often be fooled by human-unaware transformations such as synonymous word substitution. For security reasons, it is of critical importance to develop models with certified robustness that can provably guarantee that the prediction is can not be altered by any possible synonymous word substitution. In this work, we propose a certified robust method based on a new randomized smoothing technique, which constructs a stochastic ensemble by applying random word substitutions on the input sentences, and leverage the statistical properties of the ensemble to provably certify the robustness. Our method is simple and structure-free in that it only requires the black-box queries of the model outputs, and hence can be applied to any pre-trained models (such as BERT) and any types of models (world-level or subword-level). Our method significantly outperforms recent state-of-the-art methods for certified robustness on both IMDB and Amazon text classification tasks. To the best of our knowledge, we are the first work to achieve certified robustness on large systems such as BERT with practically meaningful certified accuracy.

Mao Ye, Chengyue Gong, Lizhen Nie et al.

Recent empirical works show that large deep neural networks are often highly redundant and one can find much smaller subnetworks without a significant drop of accuracy. However, most existing methods of network pruning are empirical and heuristic, leaving it open whether good subnetworks provably exist, how to find them efficiently, and if network pruning can be provably better than direct training using gradient descent. We answer these problems positively by proposing a simple greedy selection approach for finding good subnetworks, which starts from an empty network and greedily adds important neurons from the large network. This differs from the existing methods based on backward elimination, which remove redundant neurons from the large network. Theoretically, applying the greedy selection strategy on sufficiently large {pre-trained} networks guarantees to find small subnetworks with lower loss than networks directly trained with gradient descent. Our results also apply to pruning randomly weighted networks. Practically, we improve prior arts of network pruning on learning compact neural architectures on ImageNet, including ResNet, MobilenetV2/V3, and ProxylessNet. Our theory and empirical results on MobileNet suggest that we should fine-tune the pruned subnetworks to leverage the information from the large model, instead of re-training from new random initialization as suggested in \citet{liu2018rethinking}.

Dinghuai Zhang, Mao Ye, Chengyue Gong et al.

Randomized classifiers have been shown to provide a promising approach for achieving certified robustness against adversarial attacks in deep learning. However, most existing methods only leverage Gaussian smoothing noise and only work for $\ell_2$ perturbation. We propose a general framework of adversarial certification with non-Gaussian noise and for more general types of attacks, from a unified functional optimization perspective. Our new framework allows us to identify a key trade-off between accuracy and robustness via designing smoothing distributions, helping to design new families of non-Gaussian smoothing distributions that work more efficiently for different $\ell_p$ settings, including $\ell_1$, $\ell_2$ and $\ell_\infty$ attacks. Our proposed methods achieve better certification results than previous works and provide a new perspective on randomized smoothing certification.

Chengyue Gong, Tongzheng Ren, Mao Ye et al.

We propose \emph{MaxUp}, an embarrassingly simple, highly effective technique for improving the generalization performance of machine learning models, especially deep neural networks. The idea is to generate a set of augmented data with some random perturbations or transforms and minimize the maximum, or worst case loss over the augmented data. By doing so, we implicitly introduce a smoothness or robustness regularization against the random perturbations, and hence improve the generation performance. For example, in the case of Gaussian perturbation, \emph{MaxUp} is asymptotically equivalent to using the gradient norm of the loss as a penalty to encourage smoothness. We test \emph{MaxUp} on a range of tasks, including image classification, language modeling, and adversarial certification, on which \emph{MaxUp} consistently outperforms the existing best baseline methods, without introducing substantial computational overhead. In particular, we improve ImageNet classification from the state-of-the-art top-1 accuracy $85.5\%$ without extra data to $85.8\%$. Code will be released soon.

Dilin Wang, Chengyue Gong, Qiang Liu

Recently, substantial progress has been made in language modeling by using deep neural networks. However, in practice, large scale neural language models have been shown to be prone to overfitting. In this paper, we present a simple yet highly effective adversarial training mechanism for regularizing neural language models. The idea is to introduce adversarial noise to the output embedding layer while training the models. We show that the optimal adversarial noise yields a simple closed-form solution, thus allowing us to develop a simple and time efficient algorithm. Theoretically, we show that our adversarial mechanism effectively encourages the diversity of the embedding vectors, helping to increase the robustness of models. Empirically, we show that our method improves on the single model state-of-the-art results for language modeling on Penn Treebank (PTB) and Wikitext-2, achieving test perplexity scores of 46.01 and 38.07, respectively. When applied to machine translation, our method improves over various transformer-based translation baselines in BLEU scores on the WMT14 English-German and IWSLT14 German-English tasks.

Chengyue Gong, Xu Tan, Di He et al.

Maximum-likelihood estimation (MLE) is widely used in sequence to sequence tasks for model training. It uniformly treats the generation/prediction of each target token as multi-class classification, and yields non-smooth prediction probabilities: in a target sequence, some tokens are predicted with small probabilities while other tokens are with large probabilities. According to our empirical study, we find that the non-smoothness of the probabilities results in low quality of generated sequences. In this paper, we propose a sentence-wise regularization method which aims to output smooth prediction probabilities for all the tokens in the target sequence. Our proposed method can automatically adjust the weights and gradients of each token in one sentence to ensure the predictions in a sequence uniformly well. Experiments on three neural machine translation tasks and one text summarization task show that our method outperforms conventional MLE loss on all these tasks and achieves promising BLEU scores on WMT14 English-German and WMT17 Chinese-English translation task.

Chengyue Gong, Di He, Xu Tan et al.

Continuous word representation (aka word embedding) is a basic building block in many neural network-based models used in natural language processing tasks. Although it is widely accepted that words with similar semantics should be close to each other in the embedding space, we find that word embeddings learned in several tasks are biased towards word frequency: the embeddings of high-frequency and low-frequency words lie in different subregions of the embedding space, and the embedding of a rare word and a popular word can be far from each other even if they are semantically similar. This makes learned word embeddings ineffective, especially for rare words, and consequently limits the performance of these neural network models. In this paper, we develop a neat, simple yet effective way to learn \emph{FRequency-AGnostic word Embedding} (FRAGE) using adversarial training. We conducted comprehensive studies on ten datasets across four natural language processing tasks, including word similarity, language modeling, machine translation and text classification. Results show that with FRAGE, we achieve higher performance than the baselines in all tasks.