13.6CVJul 8
Vision Foundation Models in Radiology: A Scoping Review of Data, Methodology, Evaluation and Clinical TranslationAlejandro Vergara-Richart, Xavier Rafael-Palou, Almudena Fuster-Matanzo et al.
Vision foundation models (VFMs) are increasingly being developed for radiological imaging, yet their definition, development and evaluation remain heterogeneous. We conducted a PRISMAScR scoping review of peer-reviewed studies published between January 2017 and March 2026 describing foundation models trained exclusively on radiological imaging data. Sixty-seven studies were included and mapped across three pillars: data scale and heterogeneity, architectural and pretraining scalability, and downstream transferability and generalization. Datasets primarily covered brain MRI, thoracoabdominal CT, and chest X-ray, ranging from fewer than 100,000 samples to multi-million-image cohorts. Transformer-based architectures and self-supervised pretraining predominated, particularly masked image modeling, contrastive learning and multi-stage approaches. Evaluation focused mainly on segmentation and classification, whereas cross-center, cross-scanner, anatomical and modality-shift validation was inconsistently reported. Alignment with FUTURE-AI principles was uneven. Overall, radiology-specific VFMs show promising transferability, but clinical translation remains constrained by limited data representativeness, heterogeneous benchmarks, incomplete reporting and insufficient deployment-oriented evaluation.
2.6CVApr 18, 2021
An Uncertainty-aware Hierarchical Probabilistic Network for Early Prediction, Quantification and Segmentation of Pulmonary Tumour GrowthXavier Rafael-Palou, Anton Aubanell, Mario Ceresa et al.
Early detection and quantification of tumour growth would help clinicians to prescribe more accurate treatments and provide better surgical planning. However, the multifactorial and heterogeneous nature of lung tumour progression hampers identification of growth patterns. In this study, we present a novel method based on a deep hierarchical generative and probabilistic framework that, according to radiological guidelines, predicts tumour growth, quantifies its size and provides a semantic appearance of the future nodule. Unlike previous deterministic solutions, the generative characteristic of our approach also allows us to estimate the uncertainty in the predictions, especially important for complex and doubtful cases. Results of evaluating this method on an independent test set reported a tumour growth balanced accuracy of 74%, a tumour growth size MAE of 1.77 mm and a tumour segmentation Dice score of 78%. These surpassed the performances of equivalent deterministic and alternative generative solutions (i.e. probabilistic U-Net, Bayesian test dropout and Pix2Pix GAN) confirming the suitability of our approach.
2.4IVMar 26, 2021
Detection, growth quantification and malignancy prediction of pulmonary nodules using deep convolutional networks in follow-up CT scansXavier Rafael-Palou, Anton Aubanell, Mario Ceresa et al.
We address the problem of supporting radiologists in the longitudinal management of lung cancer. Therefore, we proposed a deep learning pipeline, composed of four stages that completely automatized from the detection of nodules to the classification of cancer, through the detection of growth in the nodules. In addition, the pipeline integrated a novel approach for nodule growth detection, which relied on a recent hierarchical probabilistic U-Net adapted to report uncertainty estimates. Also, a second novel method was introduced for lung cancer nodule classification, integrating into a two stream 3D-CNN network the estimated nodule malignancy probabilities derived from a pretrained nodule malignancy network. The pipeline was evaluated in a longitudinal cohort and reported comparable performances to the state of art.
5.2IVMay 22, 2020
Pulmonary Nodule Malignancy Classification Using its Temporal Evolution with Two-Stream 3D Convolutional Neural NetworksXavier Rafael-Palou, Anton Aubanell, Ilaria Bonavita et al.
Nodule malignancy assessment is a complex, time-consuming and error-prone task. Current clinical practice requires measuring changes in size and density of the nodule at different time-points. State of the art solutions rely on 3D convolutional neural networks built on pulmonary nodules obtained from single CT scan per patient. In this work, we propose a two-stream 3D convolutional neural network that predicts malignancy by jointly analyzing two pulmonary nodule volumes from the same patient taken at different time-points. Best results achieve 77% of F1-score in test with an increment of 9% and 12% of F1-score with respect to the same network trained with images from a single time-point.
12.6IVDec 22, 2019
Re-Identification and Growth Detection of Pulmonary Nodules without Image Registration Using 3D Siamese Neural NetworksXavier Rafael-Palou, Anton Aubanell, Ilaria Bonavita et al.
Lung cancer follow-up is a complex, error prone, and time consuming task for clinical radiologists. Several lung CT scan images taken at different time points of a given patient need to be individually inspected, looking for possible cancerogenous nodules. Radiologists mainly focus their attention in nodule size, density, and growth to assess the existence of malignancy. In this study, we present a novel method based on a 3D siamese neural network, for the re-identification of nodules in a pair of CT scans of the same patient without the need for image registration. The network was integrated into a two-stage automatic pipeline to detect, match, and predict nodule growth given pairs of CT scans. Results on an independent test set reported a nodule detection sensitivity of 94.7%, an accuracy for temporal nodule matching of 88.8%, and a sensitivity of 92.0% with a precision of 88.4% for nodule growth detection.
12.6IVDec 18, 2019
Integration of Convolutional Neural Networks for Pulmonary Nodule Malignancy Assessment in a Lung Cancer Classification PipelineIlaria Bonavita, Xavier Rafael-Palou, Mario Ceresa et al.
The early identification of malignant pulmonary nodules is critical for better lung cancer prognosis and less invasive chemo or radio therapies. Nodule malignancy assessment done by radiologists is extremely useful for planning a preventive intervention but is, unfortunately, a complex, time-consuming and error-prone task. This explains the lack of large datasets containing radiologists malignancy characterization of nodules. In this article, we propose to assess nodule malignancy through 3D convolutional neural networks and to integrate it in an automated end-to-end existing pipeline of lung cancer detection. For training and testing purposes we used independent subsets of the LIDC dataset. Adding the probabilities of nodules malignity in a baseline lung cancer pipeline improved its F1-weighted score by 14.7%, whereas integrating the malignancy model itself using transfer learning outperformed the baseline prediction by 11.8% of F1-weighted score. Despite the limited size of the lung cancer datasets, integrating predictive models of nodule malignancy improves prediction of lung cancer.