Imdadullah Khan

Haris Mansoor, Sarwan Ali, Shafiq Alam et al.

Analysis of the fairness of machine learning (ML) algorithms recently attracted many researchers' interest. Most ML methods show bias toward protected groups, which limits the applicability of ML models in many applications like crime rate prediction etc. Since the data may have missing values which, if not appropriately handled, are known to further harmfully affect fairness. Many imputation methods are proposed to deal with missing data. However, the effect of missing data imputation on fairness is not studied well. In this paper, we analyze the effect on fairness in the context of graph data (node attributes) imputation using different embedding and neural network methods. Extensive experiments on six datasets demonstrate severe fairness issues in missing data imputation under graph node classification. We also find that the choice of the imputation method affects both fairness and accuracy. Our results provide valuable insights into graph data fairness and how to handle missingness in graphs efficiently. This work also provides directions regarding theoretical studies on fairness in graph data.

Sarwan Ali, Taslim Murad, Imdadullah Khan

Traditional feature engineering approaches for molecular sequence classification suffer from sparsity issues and computational complexity, while deep learning models often underperform on tabular biological data. This paper introduces a novel topological approach that transforms molecular sequences into images by combining Chaos Game Representation (CGR) with Rips complex construction from algebraic topology. Our method maps sequence elements to 2D coordinates via CGR, computes pairwise distances, and constructs Rips complexes to capture both local structural and global topological features. We provide formal guarantees on representation uniqueness, topological stability, and information preservation. Extensive experiments on anticancer peptide datasets demonstrate superior performance over vector-based, sequence language models, and existing image-based methods, achieving 86.8\% and 94.5\% accuracy on breast and lung cancer datasets, respectively. The topological representation preserves critical sequence information while enabling effective utilization of vision-based deep learning architectures for molecular sequence analysis.

Ahmed Luqman, Khuzemah Qazi, Murray Patterson et al.

Despite the success of CNN models on a variety of Image classification and segmentation tasks, their extensive computational and storage demands pose considerable challenges for real-world deployment on resource-constrained devices. Quantization is one technique that aims to alleviate these large storage requirements and speed up the inference process by reducing the precision of model parameters to lower-bit representations. In this paper, we introduce a novel post-training quantization method for model weights. Our method finds optimal clipping thresholds and scaling factors along with mathematical guarantees that our method minimizes quantization noise. Empirical results on real-world datasets demonstrate that our quantization scheme significantly reduces model size and computational requirements while preserving model accuracy.

Zohair Raza Hassan, Sarwan Ali, Imdadullah Khan et al.

Feature extraction is an essential task in graph analytics. These feature vectors, called graph descriptors, are used in downstream vector-space-based graph analysis models. This idea has proved fruitful in the past, with spectral-based graph descriptors providing state-of-the-art classification accuracy. However, known algorithms to compute meaningful descriptors do not scale to large graphs since: (1) they require storing the entire graph in memory, and (2) the end-user has no control over the algorithm's runtime. In this paper, we present streaming algorithms to approximately compute three different graph descriptors capturing the essential structure of graphs. Operating on edge streams allows us to avoid storing the entire graph in memory, and controlling the sample size enables us to keep the runtime of our algorithms within desired bounds. We demonstrate the efficacy of the proposed descriptors by analyzing the approximation error and classification accuracy. Our scalable algorithms compute descriptors of graphs with millions of edges within minutes. Moreover, these descriptors yield predictive accuracy comparable to the state-of-the-art methods but can be computed using only 25% as much memory.

Sarwan Ali, Tamkanat-E-Ali, Muhammad Asad Khan et al.

SARS-CoV-2, like any other virus, continues to mutate as it spreads, according to an evolutionary process. Unlike any other virus, the number of currently available sequences of SARS-CoV-2 in public databases such as GISAID is already several million. This amount of data has the potential to uncover the evolutionary dynamics of a virus like never before. However, a million is already several orders of magnitude beyond what can be processed by the traditional methods designed to reconstruct a virus's evolutionary history, such as those that build a phylogenetic tree. Hence, new and scalable methods will need to be devised in order to make use of the ever increasing number of viral sequences being collected. Since identifying variants is an important part of understanding the evolution of a virus, in this paper, we propose an approach based on clustering sequences to identify the current major SARS-CoV-2 variants. Using a $k$-mer based feature vector generation and efficient feature selection methods, our approach is effective in identifying variants, as well as being efficient and scalable to millions of sequences. Such a clustering method allows us to show the relative proportion of each variant over time, giving the rate of spread of each variant in different locations -- something which is important for vaccine development and distribution. We also compute the importance of each amino acid position of the spike protein in identifying a given variant in terms of information gain. Positions of high variant-specific importance tend to agree with those reported by the USA's Centers for Disease Control and Prevention (CDC), further demonstrating our approach.

Sarwan Ali, Bikram Sahoo, Naimat Ullah et al.

With the rapid spread of the novel coronavirus (COVID-19) across the globe and its continuous mutation, it is of pivotal importance to design a system to identify different known (and unknown) variants of SARS-CoV-2. Identifying particular variants helps to understand and model their spread patterns, design effective mitigation strategies, and prevent future outbreaks. It also plays a crucial role in studying the efficacy of known vaccines against each variant and modeling the likelihood of breakthrough infections. It is well known that the spike protein contains most of the information/variation pertaining to coronavirus variants. In this paper, we use spike sequences to classify different variants of the coronavirus in humans. We show that preserving the order of the amino acids helps the underlying classifiers to achieve better performance. We also show that we can train our model to outperform the baseline algorithms using only a small number of training samples ($1\%$ of the data). Finally, we show the importance of the different amino acids which play a key role in identifying variants and how they coincide with those reported by the USA's Centers for Disease Control and Prevention (CDC).

Asad Ullah, Sarwan Ali, Imdadullah Khan et al.

Electromyography (EMG) signals have been successfully employed for driving prosthetic limbs of a single or double degree of freedom. This principle works by using the amplitude of the EMG signals to decide between one or two simpler movements. This method underperforms as compare to the contemporary advances done at the mechanical, electronics, and robotics end, and it lacks intuition. Recently, research on myoelectric control based on pattern recognition (PR) shows promising results with the aid of machine learning classifiers. Using the approach termed as, EMG-PR, EMG signals are divided into analysis windows, and features are extracted for each window. These features are then fed to the machine learning classifiers as input. By offering multiple class movements and intuitive control, this method has the potential to power an amputated subject to perform everyday life movements. In this paper, we investigate the effect of the analysis window and feature selection on classification accuracy of different hand and wrist movements using time-domain features. We show that effective data preprocessing and optimum feature selection helps to improve the classification accuracy of hand movements. We use publicly available hand and wrist gesture dataset of $40$ intact subjects for experimentation. Results computed using different classification algorithms show that the proposed preprocessing and features selection outperforms the baseline and achieve up to $98\%$ classification accuracy.

Safi Faizullah, Muhammad Asad Khan, Ali Alzahrani et al.

The advancement in cloud networks has enabled connectivity of both traditional networked elements and new devices from all walks of life, thereby forming the Internet of Things (IoT). In an IoT setting, improving and scaling network components as well as reducing cost is essential to sustain exponential growth. In this domain, software-defined networking (SDN) is revolutionizing the network infrastructure with a new paradigm. SDN splits the control/routing logic from the data transfer/forwarding. This splitting causes many issues in SDN, such as vulnerabilities of DDoS attacks. Many solutions (including blockchain based) have been proposed to overcome these problems. In this work, we offer a blockchain-based solution that is provided in redundant SDN (load-balanced) to service millions of IoT devices. Blockchain is considered as tamper-proof and impossible to corrupt due to the replication of the ledger and consensus for verification and addition to the ledger. Therefore, it is a perfect fit for SDN in IoT Networks. Blockchain technology provides everyone with a working proof of decentralized trust. The experimental results show gain and efficiency with respect to the accuracy, update process, and bandwidth utilization.

Haris Mansoor, Sarwan Ali, Imdadullah Khan et al.

Accurate short-term load forecasting is essential for the efficient operation of the power sector. Forecasting load at a fine granularity such as hourly loads of individual households is challenging due to higher volatility and inherent stochasticity. At the aggregate levels, such as monthly load at a grid, the uncertainties and fluctuations are averaged out; hence predicting load is more straightforward. This paper proposes a method called Forecasting using Matrix Factorization (\textsc{fmf}) for short-term load forecasting (\textsc{stlf}). \textsc{fmf} only utilizes historical data from consumers' smart meters to forecast future loads (does not use any non-calendar attributes, consumers' demographics or activity patterns information, etc.) and can be applied to any locality. A prominent feature of \textsc{fmf} is that it works at any level of user-specified granularity, both in the temporal (from a single hour to days) and spatial dimensions (a single household to groups of consumers). We empirically evaluate \textsc{fmf} on three benchmark datasets and demonstrate that it significantly outperforms the state-of-the-art methods in terms of load forecasting. The computational complexity of \textsc{fmf} is also substantially less than known methods for \textsc{stlf} such as long short-term memory neural networks, random forest, support vector machines, and regression trees.

Sarwan Ali, Muhammad Haroon Shakeel, Imdadullah Khan et al.

In many graphs such as social networks, nodes have associated attributes representing their behavior. Predicting node attributes in such graphs is an important problem with applications in many domains like recommendation systems, privacy preservation, and targeted advertisement. Attributes values can be predicted by analyzing patterns and correlations among attributes and employing classification/regression algorithms. However, these approaches do not utilize readily available network topology information. In this regard, interconnections between different attributes of nodes can be exploited to improve the prediction accuracy. In this paper, we propose an approach to represent a node by a feature map with respect to an attribute $a_i$ (which is used as input for machine learning algorithms) using all attributes of neighbors to predict attributes values for $a_i$. We perform extensive experimentation on ten real-world datasets and show that the proposed feature map significantly improves the prediction accuracy as compared to baseline approaches on these datasets.

Sarwan Ali, Maria Khalid Alvi, Safi Faizullah et al.

Software Defined Networking (SDN) is a network paradigm shift that facilitates comprehensive network programmability to cope with emerging new technologies such as cloud computing and big data. SDN facilitates simplified and centralized network management enabling it to operate in dynamic scenarios. Further, SDN uses the OpenFlow protocol for communication between the controller and its switches. The OpenFlow creates vulnerabilities for network attacks especially Distributed Denial of Service (DDoS). DDoS attacks are launched from the compromised hosts connected to the SDN switches. In this paper, we introduce a time- and space-efficient solution for the identification of these compromised hosts. Our solution consumes less computational resources and space and does not require any special equipment.

Muhammad Haroon Shakeel, Asim Karim, Imdadullah Khan

Paraphrase detection is an important task in text analytics with numerous applications such as plagiarism detection, duplicate question identification, and enhanced customer support helpdesks. Deep models have been proposed for representing and classifying paraphrases. These models, however, require large quantities of human-labeled data, which is expensive to obtain. In this work, we present a data augmentation strategy and a multi-cascaded model for improved paraphrase detection in short texts. Our data augmentation strategy considers the notions of paraphrases and non-paraphrases as binary relations over the set of texts. Subsequently, it uses graph theoretic concepts to efficiently generate additional paraphrase and non-paraphrase pairs in a sound manner. Our multi-cascaded model employs three supervised feature learners (cascades) based on CNN and LSTM networks with and without soft-attention. The learned features, together with hand-crafted linguistic features, are then forwarded to a discriminator network for final classification. Our model is both wide and deep and provides greater robustness across clean and noisy short texts. We evaluate our approach on three benchmark datasets and show that it produces a comparable or state-of-the-art performance on all three.

Sarwan Ali, Muhammad Ahmad, Umair ul Hassan et al.

Data analysis require a pairwise proximity measure over objects. Recent work has extended this to situations where the distance information between objects is given as comparison results of distances between three objects (triplets). Humans find the comparison tasks much easier than the exact distance computation and such data can be easily obtained in big quantity via crowd-sourcing. In this work, we propose triplets augmentation, an efficient method to extend the triplets data by inferring the hidden implicit information form the existing data. Triplets augmentation improves the quality of kernel-based and kernel-free data analytics. We also propose a novel set of algorithms for common data analysis tasks based on triplets. These methods work directly with triplets and avoid kernel evaluations, thus are scalable to big data. We demonstrate that our methods outperform the current best-known techniques and are robust to noisy data.

Muhammad Haroon Shakeel, Turki Alghamidi, Safi Faizullah et al.

Social media platforms and online forums generate rapid and increasing amount of textual data. Businesses, government agencies, and media organizations seek to perform sentiment analysis on this rich text data. The results of these analytics are used for adapting marketing strategies, customizing products, security and various other decision makings. Sentiment analysis has been extensively studied and various methods have been developed for it with great success. These methods, however apply to texts written in a specific language. This limits applicability to a limited demographic and a specific geographic region. In this paper we propose a general approach for sentiment analysis on data containing texts from multiple languages. This enables all the applications to utilize the results of sentiment analysis in a language oblivious or language-independent fashion.

Muhammad Haroon Shakeel, Asim Karim, Imdadullah Khan

Most studies on text classification are focused on the English language. However, short texts such as SMS are influenced by regional languages. This makes the automatic text classification task challenging due to the multilingual, informal, and noisy nature of language in the text. In this work, we propose a novel multi-cascaded deep learning model called McM for bilingual SMS classification. McM exploits $n$-gram level information as well as long-term dependencies of text for learning. Our approach aims to learn a model without any code-switching indication, lexical normalization, language translation, or language transliteration. The model relies entirely upon the text as no external knowledge base is utilized for learning. For this purpose, a 12 class bilingual text dataset is developed from SMS feedbacks of citizens on public services containing mixed Roman Urdu and English languages. Our model achieves high accuracy for classification on this dataset and outperforms the previous model for multilingual text classification, highlighting language independence of McM.