Wentao Li

Yanjun Lyu, Zihao Wu, Lu Zhang et al.

Pre-trained large language models(LLMs) have attracted increasing attention in biomedical domains due to their success in natural language processing. However, the complex traits and heterogeneity of multi-sources genomics data pose significant challenges when adapting these models to the bioinformatics and biomedical field. To address these challenges, we present GP-GPT, the first specialized large language model for genetic-phenotype knowledge representation and genomics relation analysis. Our model is fine-tuned in two stages on a comprehensive corpus composed of over 3,000,000 terms in genomics, proteomics, and medical genetics, derived from multiple large-scale validated datasets and scientific publications. GP-GPT demonstrates proficiency in accurately retrieving medical genetics information and performing common genomics analysis tasks, such as genomics information retrieval and relationship determination. Comparative experiments across domain-specific tasks reveal that GP-GPT outperforms state-of-the-art LLMs, including Llama2, Llama3 and GPT-4. These results highlight GP-GPT's potential to enhance genetic disease relation research and facilitate accurate and efficient analysis in the fields of genomics and medical genetics. Our investigation demonstrated the subtle changes of bio-factor entities' representations in the GP-GPT, which suggested the opportunities for the application of LLMs to advancing gene-phenotype research.

Manqing Dong, Zhanxiang Zhao, Yitong Geng et al.

Time series anomaly detection is crucial for industrial monitoring services that handle a large volume of data, aiming to ensure reliability and optimize system performance. Existing methods often require extensive labeled resources and manual parameter selection, highlighting the need for automation. This paper proposes a comprehensive framework for automatic parameter optimization in time series anomaly detection models. The framework introduces three optimization targets: prediction score, shape score, and sensitivity score, which can be easily adapted to different model backbones without prior knowledge or manual labeling efforts. The proposed framework has been successfully applied online for over six months, serving more than 50,000 time series every minute. It simplifies the user's experience by requiring only an expected sensitive value, offering a user-friendly interface, and achieving desired detection results. Extensive evaluations conducted on public datasets and comparison with other methods further confirm the effectiveness of the proposed framework.