PHTrans: Parallelly Aggregating Global and Local Representations for Medical Image SegmentationWentao Liu, Tong Tian, Weijin Xu et al.
The success of Transformer in computer vision has attracted increasing attention in the medical imaging community. Especially for medical image segmentation, many excellent hybrid architectures based on convolutional neural networks (CNNs) and Transformer have been presented and achieve impressive performance. However, most of these methods, which embed modular Transformer into CNNs, struggle to reach their full potential. In this paper, we propose a novel hybrid architecture for medical image segmentation called PHTrans, which parallelly hybridizes Transformer and CNN in main building blocks to produce hierarchical representations from global and local features and adaptively aggregate them, aiming to fully exploit their strengths to obtain better segmentation performance. Specifically, PHTrans follows the U-shaped encoder-decoder design and introduces the parallel hybird module in deep stages, where convolution blocks and the modified 3D Swin Transformer learn local features and global dependencies separately, then a sequence-to-volume operation unifies the dimensions of the outputs to achieve feature aggregation. Extensive experimental results on both Multi-Atlas Labeling Beyond the Cranial Vault and Automated Cardiac Diagnosis Challeng datasets corroborate its effectiveness, consistently outperforming state-of-the-art methods. The code is available at: https://github.com/lseventeen/PHTrans.
When Pedestrian Detection Meets Multi-Modal Learning: Generalist Model and Benchmark DatasetYi Zhang, Wang Zeng, Sheng Jin et al.
Recent years have witnessed increasing research attention towards pedestrian detection by taking the advantages of different sensor modalities (e.g. RGB, IR, Depth, LiDAR and Event). However, designing a unified generalist model that can effectively process diverse sensor modalities remains a challenge. This paper introduces MMPedestron, a novel generalist model for multimodal perception. Unlike previous specialist models that only process one or a pair of specific modality inputs, MMPedestron is able to process multiple modal inputs and their dynamic combinations. The proposed approach comprises a unified encoder for modal representation and fusion and a general head for pedestrian detection. We introduce two extra learnable tokens, i.e. MAA and MAF, for adaptive multi-modal feature fusion. In addition, we construct the MMPD dataset, the first large-scale benchmark for multi-modal pedestrian detection. This benchmark incorporates existing public datasets and a newly collected dataset called EventPed, covering a wide range of sensor modalities including RGB, IR, Depth, LiDAR, and Event data. With multi-modal joint training, our model achieves state-of-the-art performance on a wide range of pedestrian detection benchmarks, surpassing leading models tailored for specific sensor modality. For example, it achieves 71.1 AP on COCO-Persons and 72.6 AP on LLVIP. Notably, our model achieves comparable performance to the InternImage-H model on CrowdHuman with 30x smaller parameters. Codes and data are available at https://github.com/BubblyYi/MMPedestron.
Combining Self-Training and Hybrid Architecture for Semi-supervised Abdominal Organ SegmentationWentao Liu, Weijin Xu, Songlin Yan et al.
Abdominal organ segmentation has many important clinical applications, such as organ quantification, surgical planning, and disease diagnosis. However, manually annotating organs from CT scans is time-consuming and labor-intensive. Semi-supervised learning has shown the potential to alleviate this challenge by learning from a large set of unlabeled images and limited labeled samples. In this work, we follow the self-training strategy and employ a high-performance hybrid architecture (PHTrans) consisting of CNN and Swin Transformer for the teacher model to generate precise pseudo labels for unlabeled data. Afterward, we introduce them with labeled data together into a two-stage segmentation framework with lightweight PHTrans for training to improve the performance and generalization ability of the model while remaining efficient. Experiments on the validation set of FLARE2022 demonstrate that our method achieves excellent segmentation performance as well as fast and low-resource model inference. The average DSC and NSD are 0.8956 and 0.9316, respectively. Under our development environments, the average inference time is 18.62 s, the average maximum GPU memory is 1995.04 MB, and the area under the GPU memory-time curve and the average area under the CPU utilization-time curve are 23196.84 and 319.67. The code is available at https://github.com/lseventeen/FLARE22-TwoStagePHTrans.
CMM-Math: A Chinese Multimodal Math Dataset To Evaluate and Enhance the Mathematics Reasoning of Large Multimodal ModelsWentao Liu, Qianjun Pan, Yi Zhang et al.
Large language models (LLMs) have obtained promising results in mathematical reasoning, which is a foundational skill for human intelligence. Most previous studies focus on improving and measuring the performance of LLMs based on textual math reasoning datasets (e.g., MATH, GSM8K). Recently, a few researchers have released English multimodal math datasets (e.g., MATHVISTA and MATH-V) to evaluate the effectiveness of large multimodal models (LMMs). In this paper, we release a Chinese multimodal math (CMM-Math) dataset, including benchmark and training parts, to evaluate and enhance the mathematical reasoning of LMMs. CMM-Math contains over 28,000 high-quality samples, featuring a variety of problem types (e.g., multiple-choice, fill-in-the-blank, and so on) with detailed solutions across 12 grade levels from elementary to high school in China. Specifically, the visual context may be present in the questions or opinions, which makes this dataset more challenging. Through comprehensive analysis, we discover that state-of-the-art LMMs on the CMM-Math dataset face challenges, emphasizing the necessity for further improvements in LMM development. We also propose a Multimodal Mathematical LMM (Math-LMM) to handle the problems with mixed input of multiple images and text segments. We train our model using three stages, including foundational pre-training, foundational fine-tuning, and mathematical fine-tuning. The extensive experiments indicate that our model effectively improves math reasoning performance by comparing it with the SOTA LMMs over three multimodal mathematical datasets.
8.9IVSep 11, 2023
Two-Stage Hybrid Supervision Framework for Fast, Low-resource, and Accurate Organ and Pan-cancer Segmentation in Abdomen CTWentao Liu, Tong Tian, Weijin Xu et al.
Abdominal organ and tumour segmentation has many important clinical applications, such as organ quantification, surgical planning, and disease diagnosis. However, manual assessment is inherently subjective with considerable inter- and intra-expert variability. In the paper, we propose a hybrid supervised framework, StMt, that integrates self-training and mean teacher for the segmentation of abdominal organs and tumors using partially labeled and unlabeled data. We introduce a two-stage segmentation pipeline and whole-volume-based input strategy to maximize segmentation accuracy while meeting the requirements of inference time and GPU memory usage. Experiments on the validation set of FLARE2023 demonstrate that our method achieves excellent segmentation performance as well as fast and low-resource model inference. Our method achieved an average DSC score of 89.79\% and 45.55 \% for the organs and lesions on the validation set and the average running time and area under GPU memory-time cure are 11.25s and 9627.82MB, respectively.
3.6IVJan 9, 2024
An Automatic Cascaded Model for Hemorrhagic Stroke Segmentation and Hemorrhagic Volume EstimationWeijin Xu, Zhuang Sha, Huihua Yang et al.
Hemorrhagic Stroke (HS) has a rapid onset and is a serious condition that poses a great health threat. Promptly and accurately delineating the bleeding region and estimating the volume of bleeding in Computer Tomography (CT) images can assist clinicians in treatment planning, leading to improved treatment outcomes for patients. In this paper, a cascaded 3D model is constructed based on UNet to perform a two-stage segmentation of the hemorrhage area in CT images from rough to fine, and the hemorrhage volume is automatically calculated from the segmented area. On a dataset with 341 cases of hemorrhagic stroke CT scans, the proposed model provides high-quality segmentation outcome with higher accuracy (DSC 85.66%) and better computation efficiency (6.2 second per sample) when compared to the traditional Tada formula with respect to hemorrhage volume estimation.