Xianyan Chen

Jixin Hou, Nicholas Filla, Xianyan Chen et al.

Traditional computational methods, such as the finite element analysis, have provided valuable insights into uncovering the underlying mechanisms of brain physical behaviors. However, precise predictions of brain physics require effective constitutive models to represent the intricate mechanical properties of brain tissue. In this study, we aimed to identify the most favorable constitutive material model for human brain tissue. To achieve this, we applied artificial neural network and multiple regression methods to a generalization of widely accepted classic models, and compared the results obtained from these two approaches. To evaluate the applicability and efficacy of the model, all setups were kept consistent across both methods, except for the approach to prevent potential overfitting. Our results demonstrate that artificial neural networks are capable of automatically identifying accurate constitutive models from given admissible estimators. Nonetheless, the five-term and two-term neural network models trained under single-mode and multi-mode loading scenarios, were found to be suboptimal and could be further simplified into two-term and single-term, respectively, with higher accuracy using multiple regression. Our findings highlight the importance of hyperparameters for the artificial neural network and emphasize the necessity for detailed cross-validations of regularization parameters to ensure optimal selection at a global level in the development of material constitutive models. This study validates the applicability and accuracy of artificial neural network to automatically discover constitutive material models with proper regularization as well as the benefits in model simplification without compromising accuracy for traditional multivariable regression.

Zhengliang Liu, Zihao Wu, Mengxuan Hu et al.

In this study, we introduce PharmacyGPT, a novel framework to assess the capabilities of large language models (LLMs) such as ChatGPT and GPT-4 in emulating the role of clinical pharmacists. Our methodology encompasses the utilization of LLMs to generate comprehensible patient clusters, formulate medication plans, and forecast patient outcomes. We conduct our investigation using real data acquired from the intensive care unit (ICU) at the University of North Carolina Chapel Hill (UNC) Hospital. Our analysis offers valuable insights into the potential applications and limitations of LLMs in the field of clinical pharmacy, with implications for both patient care and the development of future AI-driven healthcare solutions. By evaluating the performance of PharmacyGPT, we aim to contribute to the ongoing discourse surrounding the integration of artificial intelligence in healthcare settings, ultimately promoting the responsible and efficacious use of such technologies.

Kun Jiang, Can Liao, Sujin Jiang et al.

Alzheimer's disease involves progressive tau accumulation and spread, leading to regional brain atrophy and disruption of large-scale functional networks. While tau propagation and tissue degeneration have been widely modeled, how atrophy dynamics translate into functional connectivity (FC) degradation remains unclear. Here, we develop a multiphysics framework integrating anisotropic tau reaction-diffusion, finite-deformation biomechanics, and network modeling to link tau-driven atrophy with FC changes. Model fidelity is evaluated by quantitatively comparing simulated atrophy patterns with imaging-derived measurements. Using longitudinal structural and functional MRI, we identify an approximately linear relationship between regional atrophy rates and FC change. We then construct an atrophy-informed structural network degradation matrix from model-predicted region-specific atrophy rates and embed it into a neural oscillation model to predict FC disruption. Our results show that (i) the coupled reaction-diffusion-biomechanical model reproduces observed regional atrophy, (ii) regional atrophy rates parsimoniously predict longitudinal FC changes, and (iii) the atrophy-informed degradation matrix captures the direction and relative magnitude of regional FC disruption. By converting tau-driven atrophy into predictive FC trajectories, the proposed framework offers a clinically interpretable avenue for forecasting disease progression and informing trial design.

Jie Tian, Jixin Hou, Zihao Wu et al.

This study is a pioneering endeavor to investigate the capabilities of Large Language Models (LLMs) in addressing conceptual questions within the domain of mechanical engineering with a focus on mechanics. Our examination involves a manually crafted exam encompassing 126 multiple-choice questions, spanning various aspects of mechanics courses, including Fluid Mechanics, Mechanical Vibration, Engineering Statics and Dynamics, Mechanics of Materials, Theory of Elasticity, and Continuum Mechanics. Three LLMs, including ChatGPT (GPT-3.5), ChatGPT (GPT-4), and Claude (Claude-2.1), were subjected to evaluation against engineering faculties and students with or without mechanical engineering background. The findings reveal GPT-4's superior performance over the other two LLMs and human cohorts in answering questions across various mechanics topics, except for Continuum Mechanics. This signals the potential future improvements for GPT models in handling symbolic calculations and tensor analyses. The performances of LLMs were all significantly improved with explanations prompted prior to direct responses, underscoring the crucial role of prompt engineering. Interestingly, GPT-3.5 demonstrates improved performance with prompts covering a broader domain, while GPT-4 excels with prompts focusing on specific subjects. Finally, GPT-4 exhibits notable advancements in mitigating input bias, as evidenced by guessing preferences for humans. This study unveils the substantial potential of LLMs as highly knowledgeable assistants in both mechanical pedagogy and scientific research.

Fengbo Ma, Zixin Rao, Xiaoting Li et al.

Scientific research relies on accurate information retrieval from literature to support analytical decisions. In this work, we introduce a new task, INformation reTRieval through literAture reVIEW (IntraView), which aims to automate fine-grained information retrieval faithfully grounded in the provided content in response to research-driven queries, and propose IntrAgent, an LLM-based agent that addresses this challenging task. In particular, IntrAgent is designed to mimic human behaviors when reading literature for information retrieval -- identifying relevant sections and then iteratively extracting key details to refine the retrieved information. It follows a two-stage pipeline: a Section Ranking stage that prioritizes relevant literature sections through structural-knowledge-enabled reasoning, and an Iterative Reading stage that continuously extracts details and synthesizes them into concise, contextually grounded answers. To support rigorous evaluation, we introduce IntraBench, a new benchmark consisting of 315 test instances built from expert-authored questions paired with literature spanning five STEM domains. Across seven backbone LLMs, IntrAgent achieves on average 13.2% higher cross-domain accuracy than state-of-the-art RAG and research-agent baselines.

Fengqing Jiang, Fengbo Ma, Zhangchen Xu et al. · uw

Large language models (LLMs) exhibit advancing capabilities in complex tasks, such as reasoning and graduate-level question answering, yet their resilience against misuse, particularly involving scientifically sophisticated risks, remains underexplored. Existing safety benchmarks typically focus either on instructions requiring minimal knowledge comprehension (e.g., ``tell me how to build a bomb") or utilize prompts that are relatively low-risk (e.g., multiple-choice or classification tasks about hazardous content). Consequently, they fail to adequately assess model safety when handling knowledge-intensive, hazardous scenarios. To address this critical gap, we introduce SOSBench, a regulation-grounded, hazard-focused benchmark encompassing six high-risk scientific domains: chemistry, biology, medicine, pharmacology, physics, and psychology. The benchmark comprises 3,000 prompts derived from real-world regulations and laws, systematically expanded via an LLM-assisted evolutionary pipeline that introduces diverse, realistic misuse scenarios (e.g., detailed explosive synthesis instructions involving advanced chemical formulas). We evaluate frontier models within a unified evaluation framework using our SOSBench. Despite their alignment claims, advanced models consistently disclose policy-violating content across all domains, demonstrating alarmingly high rates of harmful responses (e.g., 79.1% for Deepseek-R1 and 47.3% for GPT-4.1). These results highlight significant safety alignment deficiencies and underscore urgent concerns regarding the responsible deployment of powerful LLMs.

Suqiang Ma, Subhadeep Sengupta, Yao Lee et al.

Circulating blood cell clusters (CCCs) containing red blood cells (RBCs), white blood cells(WBCs), and platelets are significant biomarkers linked to conditions like thrombosis, infection, and inflammation. Flow cytometry, paired with fluorescence staining, is commonly used to analyze these cell clusters, revealing cell morphology and protein profiles. While computational approaches based on machine learning have advanced the automatic analysis of single-cell flow cytometry images, there is a lack of effort to build tools to automatically analyze images containing CCCs. Unlike single cells, cell clusters often exhibit irregular shapes and sizes. In addition, these cell clusters often consist of heterogeneous cell types, which require multi-channel staining to identify the specific cell types within the clusters. This study introduces a new computational framework for analyzing CCC images and identifying cell types within clusters. Our framework uses a two-step analysis strategy. First, it categorizes images into cell cluster and non-cluster groups by fine-tuning the You Only Look Once(YOLOv11) model, which outperforms traditional convolutional neural networks (CNNs), Vision Transformers (ViT). Then, it identifies cell types by overlaying cluster contours with regions from multi-channel fluorescence stains, enhancing accuracy despite cell debris and staining artifacts. This approach achieved over 95% accuracy in both cluster classification and phenotype identification. In summary, our automated framework effectively analyzes CCC images from flow cytometry, leveraging both bright-field and fluorescence data. Initially tested on blood cells, it holds potential for broader applications, such as analyzing immune and tumor cell clusters, supporting cellular research across various diseases.