Samir Khaki

Mahdi S. Hosseini, Babak Ehteshami Bejnordi, Vincent Quoc-Huy Trinh et al.

Computational Pathology CPath is an interdisciplinary science that augments developments of computational approaches to analyze and model medical histopathology images. The main objective for CPath is to develop infrastructure and workflows of digital diagnostics as an assistive CAD system for clinical pathology, facilitating transformational changes in the diagnosis and treatment of cancer that are mainly address by CPath tools. With evergrowing developments in deep learning and computer vision algorithms, and the ease of the data flow from digital pathology, currently CPath is witnessing a paradigm shift. Despite the sheer volume of engineering and scientific works being introduced for cancer image analysis, there is still a considerable gap of adopting and integrating these algorithms in clinical practice. This raises a significant question regarding the direction and trends that are undertaken in CPath. In this article we provide a comprehensive review of more than 800 papers to address the challenges faced in problem design all-the-way to the application and implementation viewpoints. We have catalogued each paper into a model-card by examining the key works and challenges faced to layout the current landscape in CPath. We hope this helps the community to locate relevant works and facilitate understanding of the field's future directions. In a nutshell, we oversee the CPath developments in cycle of stages which are required to be cohesively linked together to address the challenges associated with such multidisciplinary science. We overview this cycle from different perspectives of data-centric, model-centric, and application-centric problems. We finally sketch remaining challenges and provide directions for future technical developments and clinical integration of CPath (https://github.com/AtlasAnalyticsLab/CPath_Survey).

Ahmad Sajedi, Samir Khaki, Konstantinos N. Plataniotis et al.

Multilabel representation learning is recognized as a challenging problem that can be associated with either label dependencies between object categories or data-related issues such as the inherent imbalance of positive/negative samples. Recent advances address these challenges from model- and data-centric viewpoints. In model-centric, the label correlation is obtained by an external model designs (e.g., graph CNN) to incorporate an inductive bias for training. However, they fail to design an end-to-end training framework, leading to high computational complexity. On the contrary, in data-centric, the realistic nature of the dataset is considered for improving the classification while ignoring the label dependencies. In this paper, we propose a new end-to-end training framework -- dubbed KMCL (Kernel-based Mutlilabel Contrastive Learning) -- to address the shortcomings of both model- and data-centric designs. The KMCL first transforms the embedded features into a mixture of exponential kernels in Gaussian RKHS. It is then followed by encoding an objective loss that is comprised of (a) reconstruction loss to reconstruct kernel representation, (b) asymmetric classification loss to address the inherent imbalance problem, and (c) contrastive loss to capture label correlation. The KMCL models the uncertainty of the feature encoder while maintaining a low computational footprint. Extensive experiments are conducted on image classification tasks to showcase the consistent improvements of KMCL over the SOTA methods. PyTorch implementation is provided in \url{https://github.com/mahdihosseini/KMCL}.

Ahmad Sajedi, Samir Khaki, Ehsan Amjadian et al.

Researchers have long tried to minimize training costs in deep learning while maintaining strong generalization across diverse datasets. Emerging research on dataset distillation aims to reduce training costs by creating a small synthetic set that contains the information of a larger real dataset and ultimately achieves test accuracy equivalent to a model trained on the whole dataset. Unfortunately, the synthetic data generated by previous methods are not guaranteed to distribute and discriminate as well as the original training data, and they incur significant computational costs. Despite promising results, there still exists a significant performance gap between models trained on condensed synthetic sets and those trained on the whole dataset. In this paper, we address these challenges using efficient Dataset Distillation with Attention Matching (DataDAM), achieving state-of-the-art performance while reducing training costs. Specifically, we learn synthetic images by matching the spatial attention maps of real and synthetic data generated by different layers within a family of randomly initialized neural networks. Our method outperforms the prior methods on several datasets, including CIFAR10/100, TinyImageNet, ImageNet-1K, and subsets of ImageNet-1K across most of the settings, and achieves improvements of up to 6.5% and 4.1% on CIFAR100 and ImageNet-1K, respectively. We also show that our high-quality distilled images have practical benefits for downstream applications, such as continual learning and neural architecture search.

Harman Singh, Xiuyu Li, Kusha Sareen et al. · berkeley

Test-time scaling for complex reasoning tasks shows that leveraging inference-time compute, by methods such as independently sampling and aggregating multiple solutions, results in significantly better task outcomes. However, a critical bottleneck is verification: sampling is only effective if correct solutions can be reliably identified among candidates. While existing approaches typically evaluate candidates independently via scalar scoring, we demonstrate that models are substantially stronger at pairwise self-verification. Leveraging this insight, we introduce $V_1$, a framework that unifies generation and verification through efficient pairwise ranking. $V_1$ comprises two components: $V_1$-Infer, an uncertainty-guided algorithm using a tournament-based ranking that dynamically allocates self-verification compute to candidate pairs whose relative correctness is most uncertain; and $V_1$-PairRL, an RL framework that jointly trains a single model as both generator and pairwise self-verifier, ensuring the verifier adapts to the generator's evolving distribution. On code generation (LiveCodeBench, CodeContests, SWE-Bench) and math reasoning (AIME, HMMT) benchmarks, $V_1$-Infer improves Pass@1 by up to $10%$ over pointwise verification and outperforms recent test-time scaling methods while being significantly more efficient. Furthermore, $V_1$-PairRL achieves $7$--$9%$ test-time scaling gains over standard RL and pointwise joint training, and improves base Pass@1 by up to 8.7% over standard RL in a code-generation setting.

Samir Khaki, Weihan Luo

As the saying goes, sometimes less is more -- and when it comes to neural networks, that couldn't be more true. Enter pruning, the art of selectively trimming away unnecessary parts of a network to create a more streamlined, efficient architecture. In this paper, we introduce a novel end-to-end pipeline for model pruning via the frequency domain. This work aims to shed light on the interoperability of intermediate model outputs and their significance beyond the spatial domain. Our method, dubbed Common Frequency Domain Pruning (CFDP) aims to extrapolate common frequency characteristics defined over the feature maps to rank the individual channels of a layer based on their level of importance in learning the representation. By harnessing the power of CFDP, we have achieved state-of-the-art results on CIFAR-10 with GoogLeNet reaching an accuracy of 95.25%, that is, +0.2% from the original model. We also outperform all benchmarks and match the original model's performance on ImageNet, using only 55% of the trainable parameters and 60% of the FLOPs. In addition to notable performances, models produced via CFDP exhibit robustness to a variety of configurations including pruning from untrained neural architectures, and resistance to adversarial attacks. The implementation code can be found at https://github.com/Skhaki18/CFDP.

Zhijian Liu, Zhuoyang Zhang, Samir Khaki et al.

Semantic segmentation empowers numerous real-world applications, such as autonomous driving and augmented/mixed reality. These applications often operate on high-resolution images (e.g., 8 megapixels) to capture the fine details. However, this comes at the cost of considerable computational complexity, hindering the deployment in latency-sensitive scenarios. In this paper, we introduce SparseRefine, a novel approach that enhances dense low-resolution predictions with sparse high-resolution refinements. Based on coarse low-resolution outputs, SparseRefine first uses an entropy selector to identify a sparse set of pixels with high entropy. It then employs a sparse feature extractor to efficiently generate the refinements for those pixels of interest. Finally, it leverages a gated ensembler to apply these sparse refinements to the initial coarse predictions. SparseRefine can be seamlessly integrated into any existing semantic segmentation model, regardless of CNN- or ViT-based. SparseRefine achieves significant speedup: 1.5 to 3.7 times when applied to HRNet-W48, SegFormer-B5, Mask2Former-T/L and SegNeXt-L on Cityscapes, with negligible to no loss of accuracy. Our "dense+sparse" paradigm paves the way for efficient high-resolution visual computing.

Zekai Li, Ziyao Guo, Wangbo Zhao et al.

Dataset Distillation aims to compress a large dataset into a significantly more compact, synthetic one without compromising the performance of the trained models. To achieve this, existing methods use the agent model to extract information from the target dataset and embed it into the distilled dataset. Consequently, the quality of extracted and embedded information determines the quality of the distilled dataset. In this work, we find that existing methods introduce misaligned information in both information extraction and embedding stages. To alleviate this, we propose Prioritize Alignment in Dataset Distillation (PAD), which aligns information from the following two perspectives. 1) We prune the target dataset according to the compressing ratio to filter the information that can be extracted by the agent model. 2) We use only deep layers of the agent model to perform the distillation to avoid excessively introducing low-level information. This simple strategy effectively filters out misaligned information and brings non-trivial improvement for mainstream matching-based distillation algorithms. Furthermore, built on trajectory matching, \textbf{PAD} achieves remarkable improvements on various benchmarks, achieving state-of-the-art performance.

Kai Wang, Zekai Li, Zhi-Qi Cheng et al.

Dataset distillation has demonstrated strong performance on simple datasets like CIFAR, MNIST, and TinyImageNet but struggles to achieve similar results in more complex scenarios. In this paper, we propose EDF (emphasizes the discriminative features), a dataset distillation method that enhances key discriminative regions in synthetic images using Grad-CAM activation maps. Our approach is inspired by a key observation: in simple datasets, high-activation areas typically occupy most of the image, whereas in complex scenarios, the size of these areas is much smaller. Unlike previous methods that treat all pixels equally when synthesizing images, EDF uses Grad-CAM activation maps to enhance high-activation areas. From a supervision perspective, we downplay supervision signals that have lower losses, as they contain common patterns. Additionally, to help the DD community better explore complex scenarios, we build the Complex Dataset Distillation (Comp-DD) benchmark by meticulously selecting sixteen subsets, eight easy and eight hard, from ImageNet-1K. In particular, EDF consistently outperforms SOTA results in complex scenarios, such as ImageNet-1K subsets. Hopefully, more researchers will be inspired and encouraged to improve the practicality and efficacy of DD. Our code and benchmark will be made public at https://github.com/NUS-HPC-AI-Lab/EDF.

Mengxuan Wu, Zekai Li, Zhiyuan Liang et al.

Mamba-based vision models have gained extensive attention as a result of being computationally more efficient than attention-based models. However, spatial redundancy still exists in these models, represented by token and block redundancy. For token redundancy, we analytically find that early token pruning methods will result in inconsistency between training and inference or introduce extra computation for inference. Therefore, we customize token pruning to fit the Mamba structure by rearranging the pruned sequence before feeding it into the next Mamba block. For block redundancy, we allow each image to select SSM blocks dynamically based on an empirical observation that the inference speed of Mamba-based vision models is largely affected by the number of SSM blocks. Our proposed method, Dynamic Vision Mamba (DyVM), effectively reduces FLOPs with minor performance drops. We achieve a reduction of 35.2\% FLOPs with only a loss of accuracy of 1.7\% on Vim-S. It also generalizes well across different Mamba vision model architectures and different vision tasks. Our code will be made public.

Chen Zhu, Wangbo Zhao, Huiwen Zhang et al.

Vision Transformers (ViTs) have emerged as a foundational model in computer vision, excelling in generalization and adaptation to downstream tasks. However, deploying ViTs to support diverse resource constraints typically requires retraining multiple, size-specific ViTs, which is both time-consuming and energy-intensive. To address this issue, we propose an efficient ViT adaptation framework that enables a single adaptation process to generate multiple models of varying sizes for deployment on platforms with various resource constraints. Our approach comprises two stages. In the first stage, we enhance a pre-trained ViT with a nested elastic architecture that enables structural flexibility across MLP expansion ratio, number of attention heads, embedding dimension, and network depth. To preserve pre-trained knowledge and ensure stable adaptation, we adopt a curriculum-based training strategy that progressively increases elasticity. In the second stage, we design a lightweight router to select submodels according to computational budgets and downstream task demands. Initialized with Pareto-optimal configurations derived via a customized NSGA-II algorithm, the router is then jointly optimized with the backbone. Extensive experiments on multiple benchmarks demonstrate the effectiveness and versatility of EA-ViT. The code is available at https://github.com/zcxcf/EA-ViT.

Samir Khaki, Konstantinos N. Plataniotis

We introduce the $\textbf{O}$ne-shot $\textbf{P}$runing $\textbf{T}$echnique for $\textbf{I}$nterchangeable $\textbf{N}$etworks ($\textbf{OPTIN}$) framework as a tool to increase the efficiency of pre-trained transformer architectures $\textit{without requiring re-training}$. Recent works have explored improving transformer efficiency, however often incur computationally expensive re-training procedures or depend on architecture-specific characteristics, thus impeding practical wide-scale adoption. To address these shortcomings, the OPTIN framework leverages intermediate feature distillation, capturing the long-range dependencies of model parameters (coined $\textit{trajectory}$), to produce state-of-the-art results on natural language, image classification, transfer learning, and semantic segmentation tasks $\textit{without re-training}$. Given a FLOP constraint, the OPTIN framework will compress the network while maintaining competitive accuracy performance and improved throughput. Particularly, we show a $\leq 2$% accuracy degradation from NLP baselines and a $0.5$% improvement from state-of-the-art methods on image classification at competitive FLOPs reductions. We further demonstrate the generalization of tasks and architecture with comparative performance using Mask2Former for semantic segmentation and cnn-style networks. OPTIN presents one of the first one-shot efficient frameworks for compressing transformer architectures that generalizes well across different class domains, in particular: natural language and image-related tasks, without $\textit{re-training}$.

Zekai Li, Xinhao Zhong, Samir Khaki et al.

In recent years, dataset distillation has provided a reliable solution for data compression, where models trained on the resulting smaller synthetic datasets achieve performance comparable to those trained on the original datasets. To further improve the performance of synthetic datasets, various training pipelines and optimization objectives have been proposed, greatly advancing the field of dataset distillation. Recent decoupled dataset distillation methods introduce soft labels and stronger data augmentation during the post-evaluation phase and scale dataset distillation up to larger datasets (e.g., ImageNet-1K). However, this raises a question: Is accuracy still a reliable metric to fairly evaluate dataset distillation methods? Our empirical findings suggest that the performance improvements of these methods often stem from additional techniques rather than the inherent quality of the images themselves, with even randomly sampled images achieving superior results. Such misaligned evaluation settings severely hinder the development of DD. Therefore, we propose DD-Ranking, a unified evaluation framework, along with new general evaluation metrics to uncover the true performance improvements achieved by different methods. By refocusing on the actual information enhancement of distilled datasets, DD-Ranking provides a more comprehensive and fair evaluation standard for future research advancements.

Samir Khaki, Ahmad Sajedi, Kai Wang et al.

Recent works in dataset distillation seek to minimize training expenses by generating a condensed synthetic dataset that encapsulates the information present in a larger real dataset. These approaches ultimately aim to attain test accuracy levels akin to those achieved by models trained on the entirety of the original dataset. Previous studies in feature and distribution matching have achieved significant results without incurring the costs of bi-level optimization in the distillation process. Despite their convincing efficiency, many of these methods suffer from marginal downstream performance improvements, limited distillation of contextual information, and subpar cross-architecture generalization. To address these challenges in dataset distillation, we propose the ATtentiOn Mixer (ATOM) module to efficiently distill large datasets using a mixture of channel and spatial-wise attention in the feature matching process. Spatial-wise attention helps guide the learning process based on consistent localization of classes in their respective images, allowing for distillation from a broader receptive field. Meanwhile, channel-wise attention captures the contextual information associated with the class itself, thus making the synthetic image more informative for training. By integrating both types of attention, our ATOM module demonstrates superior performance across various computer vision datasets, including CIFAR10/100 and TinyImagenet. Notably, our method significantly improves performance in scenarios with a low number of images per class, thereby enhancing its potential. Furthermore, we maintain the improvement in cross-architectures and applications such as neural architecture search.

Ahmad Sajedi, Samir Khaki, Yuri A. Lawryshyn et al.

Multi-label image classification presents a challenging task in many domains, including computer vision and medical imaging. Recent advancements have introduced graph-based and transformer-based methods to improve performance and capture label dependencies. However, these methods often include complex modules that entail heavy computation and lack interpretability. In this paper, we propose Probabilistic Multi-label Contrastive Learning (ProbMCL), a novel framework to address these challenges in multi-label image classification tasks. Our simple yet effective approach employs supervised contrastive learning, in which samples that share enough labels with an anchor image based on a decision threshold are introduced as a positive set. This structure captures label dependencies by pulling positive pair embeddings together and pushing away negative samples that fall below the threshold. We enhance representation learning by incorporating a mixture density network into contrastive learning and generating Gaussian mixture distributions to explore the epistemic uncertainty of the feature encoder. We validate the effectiveness of our framework through experimentation with datasets from the computer vision and medical imaging domains. Our method outperforms the existing state-of-the-art methods while achieving a low computational footprint on both datasets. Visualization analyses also demonstrate that ProbMCL-learned classifiers maintain a meaningful semantic topology.

Samir Khaki, Xiuyu Li, Junxian Guo et al.

Fine-tuning LLMs is both computationally and memory-intensive. While parameter-efficient fine-tuning methods, such as QLoRA and DoRA, reduce the number of trainable parameters and lower memory usage, they do not decrease computational cost. In some cases, they may even slow down fine-tuning. In this paper, we introduce SparseLoRA, a method that accelerates LLM fine-tuning through contextual sparsity. We propose a lightweight, training-free SVD sparsity estimator that dynamically selects a sparse subset of weights for loss and gradient computation. Also, we systematically analyze and address sensitivity across layers, tokens, and training steps. Our experimental results show that SparseLoRA reduces computational cost by up to 2.2 times and a measured speedup of up to 1.6 times while maintaining accuracy across various downstream tasks, including commonsense and arithmetic reasoning, code generation, and instruction following.

Ahmad Sajedi, Samir Khaki, Lucy Z. Liu et al.

Dataset distillation aims to distill the knowledge of a large-scale real dataset into small yet informative synthetic data such that a model trained on it performs as well as a model trained on the full dataset. Despite recent progress, existing dataset distillation methods often struggle with computational efficiency, scalability to complex high-resolution datasets, and generalizability to deep architectures. These approaches typically require retraining when the distillation ratio changes, as knowledge is embedded in raw pixels. In this paper, we propose a novel framework called Data-to-Model Distillation (D2M) to distill the real dataset's knowledge into the learnable parameters of a pre-trained generative model by aligning rich representations extracted from real and generated images. The learned generative model can then produce informative training images for different distillation ratios and deep architectures. Extensive experiments on 15 datasets of varying resolutions show D2M's superior performance, re-distillation efficiency, and cross-architecture generalizability. Our method effectively scales up to high-resolution 128x128 ImageNet-1K. Furthermore, we verify D2M's practical benefits for downstream applications in neural architecture search.

Samir Khaki, Junxian Guo, Jiaming Tang et al. · mit

Vision Language Models (VLMs) have rapidly advanced in integrating visual and textual reasoning, powering applications across high-resolution image understanding, long-video analysis, and multi-turn conversation. However, their scalability remains limited by the growing number of visual tokens that dominate inference latency. We present SparseVILA, a new paradigm for efficient VLM inference that decouples visual sparsity across the prefilling and decoding stages. SparseVILA distributes sparsity across stages by pruning redundant visual tokens during prefill and retrieving only query-relevant tokens during decoding. This decoupled design matches leading prefill pruning methods while preserving multi-turn fidelity by retaining most of the visual cache so that query-aware tokens can be retrieved at each conversation round. Built on an AWQ-optimized inference pipeline, SparseVILA achieves up to 4.0 times faster prefilling, 2.5 times faster decoding, and an overall 2.6 times end-to-end speedup on long-context video tasks -- while improving accuracy on document-understanding and reasoning tasks. By decoupling query-agnostic pruning and query-aware retrieval, SparseVILA establishes a new direction for efficient multimodal inference, offering a training-free, architecture-agnostic framework for accelerating large VLMs without sacrificing capability.

Yi Ru Wang, Samir Khaki, Weihang Zheng et al.

Neural Architecture Search (NAS) has been pivotal in finding optimal network configurations for Convolution Neural Networks (CNNs). While many methods explore NAS from a global search-space perspective, the employed optimization schemes typically require heavy computational resources. This work introduces a method that is efficient in computationally constrained environments by examining the micro-search space of channel size. In tackling channel-size optimization, we design an automated algorithm to extract the dependencies within different connected layers of the network. In addition, we introduce the idea of knowledge distillation, which enables preservation of trained weights, admist trials where the channel sizes are changing. Further, since the standard performance indicators (accuracy, loss) fail to capture the performance of individual network components (providing an overall network evaluation), we introduce a novel metric that highly correlates with test accuracy and enables analysis of individual network layers. Combining dependency extraction, metrics, and knowledge distillation, we introduce an efficient searching algorithm, with simulated annealing inspired stochasticity, and demonstrate its effectiveness in finding optimal architectures that outperform baselines by a large margin.