Bruno Régaldo-Saint Blancard

Michael McCabe, Bruno Régaldo-Saint Blancard, Liam Holden Parker et al. · cambridge

We introduce multiple physics pretraining (MPP), an autoregressive task-agnostic pretraining approach for physical surrogate modeling of spatiotemporal systems with transformers. In MPP, rather than training one model on a specific physical system, we train a backbone model to predict the dynamics of multiple heterogeneous physical systems simultaneously in order to learn features that are broadly useful across systems and facilitate transfer. In order to learn effectively in this setting, we introduce a shared embedding and normalization strategy that projects the fields of multiple systems into a shared embedding space. We validate the efficacy of our approach on both pretraining and downstream tasks over a broad fluid mechanics-oriented benchmark. We show that a single MPP-pretrained transformer is able to match or outperform task-specific baselines on all pretraining sub-tasks without the need for finetuning. For downstream tasks, we demonstrate that finetuning MPP-trained models results in more accurate predictions across multiple time-steps on systems with previously unseen physical components or higher dimensional systems compared to training from scratch or finetuning pretrained video foundation models. We open-source our code and model weights trained at multiple scales for reproducibility.

Siavash Golkar, Mariel Pettee, Michael Eickenberg et al. · cambridge

Due in part to their discontinuous and discrete default encodings for numbers, Large Language Models (LLMs) have not yet been commonly used to process numerically-dense scientific datasets. Rendering datasets as text, however, could help aggregate diverse and multi-modal scientific data into a single training corpus, thereby potentially facilitating the development of foundation models for science. In this work, we introduce xVal, a strategy for continuously tokenizing numbers within language models that results in a more appropriate inductive bias for scientific applications. By training specially-modified language models from scratch on a variety of scientific datasets formatted as text, we find that xVal generally outperforms other common numerical tokenization strategies on metrics including out-of-distribution generalization and computational efficiency.

David Heurtel-Depeiges, Blakesley Burkhart, Ruben Ohana et al.

In cosmology, the quest for primordial $B$-modes in cosmic microwave background (CMB) observations has highlighted the critical need for a refined model of the Galactic dust foreground. We investigate diffusion-based modeling of the dust foreground and its interest for component separation. Under the assumption of a Gaussian CMB with known cosmology (or covariance matrix), we show that diffusion models can be trained on examples of dust emission maps such that their sampling process directly coincides with posterior sampling in the context of component separation. We illustrate this on simulated mixtures of dust emission and CMB. We show that common summary statistics (power spectrum, Minkowski functionals) of the components are well recovered by this process. We also introduce a model conditioned by the CMB cosmology that outperforms models trained using a single cosmology on component separation. Such a model will be used in future work for diffusion-based cosmological inference.

Yuling Yao, Bruno Régaldo-Saint Blancard, Justin Domke

Simulation-based inference has been popular for amortized Bayesian computation. It is typical to have more than one posterior approximation, from different inference algorithms, different architectures, or simply the randomness of initialization and stochastic gradients. With a consistency guarantee, we present a general posterior stacking framework to make use of all available approximations. Our stacking method is able to combine densities, simulation draws, confidence intervals, and moments, and address the overall precision, calibration, coverage, and bias of the posterior approximation at the same time. We illustrate our method on several benchmark simulations and a challenging cosmological inference task.

Ruben Ohana, Michael McCabe, Lucas Meyer et al. · cambridge

Machine learning based surrogate models offer researchers powerful tools for accelerating simulation-based workflows. However, as standard datasets in this space often cover small classes of physical behavior, it can be difficult to evaluate the efficacy of new approaches. To address this gap, we introduce the Well: a large-scale collection of datasets containing numerical simulations of a wide variety of spatiotemporal physical systems. The Well draws from domain experts and numerical software developers to provide 15TB of data across 16 datasets covering diverse domains such as biological systems, fluid dynamics, acoustic scattering, as well as magneto-hydrodynamic simulations of extra-galactic fluids or supernova explosions. These datasets can be used individually or as part of a broader benchmark suite. To facilitate usage of the Well, we provide a unified PyTorch interface for training and evaluating models. We demonstrate the function of this library by introducing example baselines that highlight the new challenges posed by the complex dynamics of the Well. The code and data is available at https://github.com/PolymathicAI/the_well.

Bruno Régaldo-Saint Blancard, Michael Eickenberg

Separating signals from an additive mixture may be an unnecessarily hard problem when one is only interested in specific properties of a given signal. In this work, we tackle simpler "statistical component separation" problems that focus on recovering a predefined set of statistical descriptors of a target signal from a noisy mixture. Assuming access to samples of the noise process, we investigate a method devised to match the statistics of the solution candidate corrupted by noise samples with those of the observed mixture. We first analyze the behavior of this method using simple examples with analytically tractable calculations. Then, we apply it in an image denoising context employing 1) wavelet-based descriptors, 2) ConvNet-based descriptors on astrophysics and ImageNet data. In the case of 1), we show that our method better recovers the descriptors of the target data than a standard denoising method in most situations. Additionally, despite not constructed for this purpose, it performs surprisingly well in terms of peak signal-to-noise ratio on full signal reconstruction. In comparison, representation 2) appears less suitable for image denoising. Finally, we extend this method by introducing a diffusive stepwise algorithm which gives a new perspective to the initial method and leads to promising results for image denoising under specific circumstances.

David Heurtel-Depeiges, Charles C. Margossian, Ruben Ohana et al.

In recent years, denoising problems have become intertwined with the development of deep generative models. In particular, diffusion models are trained like denoisers, and the distribution they model coincide with denoising priors in the Bayesian picture. However, denoising through diffusion-based posterior sampling requires the noise level and covariance to be known, preventing blind denoising. We overcome this limitation by introducing Gibbs Diffusion (GDiff), a general methodology addressing posterior sampling of both the signal and the noise parameters. Assuming arbitrary parametric Gaussian noise, we develop a Gibbs algorithm that alternates sampling steps from a conditional diffusion model trained to map the signal prior to the family of noise distributions, and a Monte Carlo sampler to infer the noise parameters. Our theoretical analysis highlights potential pitfalls, guides diagnostic usage, and quantifies errors in the Gibbs stationary distribution caused by the diffusion model. We showcase our method for 1) blind denoising of natural images involving colored noises with unknown amplitude and spectral index, and 2) a cosmology problem, namely the analysis of cosmic microwave background data, where Bayesian inference of "noise" parameters means constraining models of the evolution of the Universe.

Jeff Shen, Francois Lanusse, Liam Holden Parker et al. · cambridge

Sequential scientific data span many resolutions and domains, and unifying them into a common representation is a key step toward developing foundation models for the sciences. Astronomical spectra exemplify this challenge: massive surveys have collected millions of spectra across a wide range of wavelengths and resolutions, yet analyses remain fragmented across spectral domains (e.g., optical vs. infrared) and object types (e.g., stars vs. galaxies), limiting the ability to pool information across datasets. We present a deep learning model that jointly learns from heterogeneous spectra in a self-supervised manner. Our universal spectral tokenizer processes spectra from a variety of object types and resolutions directly on their native wavelength grids, producing intrinsically aligned, homogeneous, and physically meaningful representations that can be efficiently adapted to achieve competitive performance across a range of downstream tasks. For the first time, we demonstrate that a single model can unify spectral data across resolutions and domains, suggesting that our model can serve as a powerful building block for foundation models in astronomy -- and potentially extend to other scientific domains with heterogeneous sequential data, such as climate and healthcare.