Yifei Sun

Juren Li, Fanzhe Fu, Ran Wei et al.

Pathogenic chromosome abnormalities are very common among the general population. While numerical chromosome abnormalities can be quickly and precisely detected, structural chromosome abnormalities are far more complex and typically require considerable efforts by human experts for identification. This paper focuses on investigating the modeling of chromosome features and the identification of chromosomes with structural abnormalities. Most existing data-driven methods concentrate on a single chromosome and consider each chromosome independently, overlooking the crucial aspect of homologous chromosomes. In normal cases, homologous chromosomes share identical structures, with the exception that one of them is abnormal. Therefore, we propose an adaptive method to align homologous chromosomes and diagnose structural abnormalities through homologous similarity. Inspired by the process of human expert diagnosis, we incorporate information from multiple pairs of homologous chromosomes simultaneously, aiming to reduce noise disturbance and improve prediction performance. Extensive experiments on real-world datasets validate the effectiveness of our model compared to baselines.

Junhao Jia, Yunyou Liu, Cheng Yang et al.

Functional magnetic resonance imaging (fMRI) provides a powerful non-invasive window into the brain's functional organization by generating complex functional networks, typically modeled as graphs. These brain networks exhibit a hierarchical topology that is crucial for cognitive processing. However, due to inherent spatial constraints, standard Euclidean GNNs struggle to represent these hierarchical structures without high distortion, limiting their clinical performance. To address this limitation, we propose Brain-HGCN, a geometric deep learning framework based on hyperbolic geometry, which leverages the intrinsic property of negatively curved space to model the brain's network hierarchy with high fidelity. Grounded in the Lorentz model, our model employs a novel hyperbolic graph attention layer with a signed aggregation mechanism to distinctly process excitatory and inhibitory connections, ultimately learning robust graph-level representations via a geometrically sound Fréchet mean for graph readout. Experiments on two large-scale fMRI datasets for psychiatric disorder classification demonstrate that our approach significantly outperforms a wide range of state-of-the-art Euclidean baselines. This work pioneers a new geometric deep learning paradigm for fMRI analysis, highlighting the immense potential of hyperbolic GNNs in the field of computational psychiatry.