Daniel Israel

Poorva Garg, Renato Lui Geh, Daniel Israel et al.

LLMs are widely used for code generation and mathematical reasoning tasks where they are required to generate structured output. They either need to reason about code, generate code for a given specification, or reason using programs of thought. The typical approach to code generation is to prompt the model and generate samples until an appropriate program is obtained. Within this process, sampling $n$ programs from the language model requires $n$ GPU compute-intensive generations which becomes prohibitively expensive for larger values of $n$. In this work, we address this limitation by exposing the LLM's distribution within the generated programs themselves. We propose a novel test-time framework we dub probabilistic programs of thought to obtain more samples from the model with fewer LLM generations. Given a program generated by a model and the associated next-token probabilities, we build a probabilistic program that compactly represents exponentially many deterministic programs. Since performing probabilistic reasoning in this probabilistic program is much cheaper, our approach allows sampling new programs without any additional GPU compute and little CPU overhead. We instantiate our approach on benchmarks for code generation, code understanding and mathematical reasoning and report improvements in performance with fewer generations from the LLM.

Daniel Israel, Aditya Grover, Guy Van den Broeck

Backdoor adjustment is a technique in causal inference for estimating interventional quantities from purely observational data. For example, in medical settings, backdoor adjustment can be used to control for confounding and estimate the effectiveness of a treatment. However, high dimensional treatments and confounders pose a series of potential pitfalls: tractability, identifiability, optimization. In this work, we take a generative modeling approach to backdoor adjustment for high dimensional treatments and confounders. We cast backdoor adjustment as an optimization problem in variational inference without reliance on proxy variables and hidden confounders. Empirically, our method is able to estimate interventional likelihood in a variety of high dimensional settings, including semi-synthetic X-ray medical data. To the best of our knowledge, this is the first application of backdoor adjustment in which all the relevant variables are high dimensional.

Hritik Bansal, Daniel Israel, Siyan Zhao et al.

Recent advancements in mixed-modal generative have opened new avenues for developing unified biomedical assistants capable of analyzing biomedical images, answering complex questions about them, and generating multimodal patient reports. However, existing datasets face challenges such as small sizes, limited coverage of biomedical tasks and domains, and a reliance on narrow sources. To address these gaps, we present MedMax, a large-scale multimodal biomedical instruction-tuning dataset for mixed-modal foundation models. With 1.47 million instances, MedMax encompasses a diverse range of tasks, including interleaved image-text generation, biomedical image captioning and generation, visual chat, and report understanding. These tasks span knowledge across diverse biomedical domains, including radiology and histopathology, grounded in medical papers and YouTube videos. Subsequently, we fine-tune a mixed-modal foundation model on the MedMax dataset, achieving significant performance improvements: a 26% gain over the Chameleon model and an 18.3% improvement over GPT-4o across 12 downstream biomedical visual question-answering tasks. Finally, we introduce a unified evaluation suite for biomedical tasks to guide the development of mixed-modal biomedical AI assistants. The data, model, and code is available at https://mint-medmax.github.io/.

Daniel Israel, Guy Van den Broeck, Aditya Grover

The generation speed of LLMs are bottlenecked by autoregressive decoding, where tokens are predicted sequentially one by one. Alternatively, diffusion large language models (dLLMs) theoretically allow for parallel token generation, but in practice struggle to achieve the speed of autoregressive models without significantly sacrificing quality. We therefore introduce adaptive parallel decoding (APD), a novel method that dynamically adjusts the number of tokens sampled in parallel. We achieve this by defining a multiplicative mixture between the dLLM marginal probabilities and the joint probability of sequences under a small auxiliary autoregressive model. This inverts the standard setup of speculative decoding, where the goal is to sample from a large autoregressive verifier by drafting from a smaller model. We further optimize APD by enabling KV caching and limiting the size of the masked input. Altogether, our method puts forward three tunable parameters to flexibly tradeoff throughput and quality. We show that APD provides markedly higher throughput with minimal quality degradations on downstream benchmarks.

Siyan Zhao, Daniel Israel, Guy Van den Broeck et al.

During inference for transformer-based large language models (LLM), prefilling is the computation of the key-value (KV) cache for input tokens in the prompt prior to autoregressive generation. For longer input prompt lengths, prefilling will incur a significant overhead on decoding time. In this work, we highlight the following pitfall of prefilling: for batches containing high-varying prompt lengths, significant computation is wasted by the standard practice of padding sequences to the maximum length. As LLMs increasingly support longer context lengths, potentially up to 10 million tokens, variations in prompt lengths within a batch become more pronounced. To address this, we propose Prepacking, a simple yet effective method to optimize prefilling computation. To avoid redundant computation on pad tokens, prepacking combines prompts of varying lengths into a sequence and packs multiple sequences into a compact batch using a bin-packing algorithm. It then modifies the attention mask and positional encoding to compute multiple prefilled KV-caches for multiple prompts within a single sequence. On standard curated dataset containing prompts with varying lengths, we obtain a significant speed and memory efficiency improvements as compared to the default padding-based prefilling computation within Huggingface across a range of base model configurations and inference serving scenarios.

Daniel Israel, Aditya Grover, Guy Van den Broeck

Historically, LLMs have been trained using either autoregressive (AR) or masked language modeling (MLM) objectives, with AR models gaining dominance in recent years. However, AR models are inherently incapable of masked infilling, which is the ability to predict masked tokens between past and future context. In contrast, MLM models suffer from intrinsic computational inefficiencies during both training and inference that hinder their scalability. This work introduces MARIA (Masked and Autoregressive Infilling Architecture), a novel approach that leverages the strengths of both paradigms to achieve state-of-the-art masked infilling performance. MARIA combines a pre-trained MLM and AR model by training a linear decoder that takes their concatenated hidden states as input. This minimal modification enables the AR model to perform infilling while retaining its inherent advantages in terms of faster inference with KV caching. Our results demonstrate that MARIA significantly outperforms existing methods, namely discrete diffusion models, on masked infilling tasks.

Daniel Israel, Tian Jin, Ellie Cheng et al.

A central challenge in large language model inference is the trade-off between generation speed and output quality. Autoregressive models produce high-quality text but generate tokens sequentially. Diffusion models can generate tokens in parallel but often need many iterations to match the same quality. We propose planned diffusion, a hybrid method that combines the strengths of both paradigms. Planned diffusion works in two stages: first, the model creates a short autoregressive plan that breaks the output into smaller, independent spans. Second, the model generates these spans simultaneously using diffusion. This approach expands the speed-quality Pareto frontier and provides a practical path to faster, high-quality text generation. On AlpacaEval, a suite of 805 instruction-following prompts, planned diffusion achieves Pareto-optimal trade-off between quality and latency, achieving 1.27x to 1.81x speedup over autoregressive generation with only 0.87\% to 5.4\% drop in win rate, respectively. Our sensitivity analysis shows that the planning mechanism of planned diffusion is minimal and reliable, and simple runtime knobs exist to provide flexible control of the quality-latency trade-off.

Alex Chen, Renato Geh, Aditya Grover et al.

KV cache compression promises increased throughput and efficiency with negligible loss in performance. While the gains in throughput are indisputable and recent literature has indeed shown minimal degradation on particular benchmarks, in general the consequences of compression in realistic scenarios such as multi-instruction prompting have been insufficiently studied. In this paper, we identify several pitfalls practitioners should be aware of when deploying KV cache compressed LLMs. Importantly, we show that certain instructions degrade much more rapidly with compression, effectively causing them to be completely ignored by the LLM. As a practical example of that, we highlight system prompt leakage as a case study, empirically showing the impact of compression on leakage and general instruction following. We show several factors that play a role in prompt leakage: compression method, instruction order, and KV eviction bias. We then propose simple changes to KV cache eviction policies that can reduce the impact of these factors and improve the overall performance in multi-instruction tasks.