Ju Li

Yang Jeong Park, Daniel Kaplan, Zhichu Ren et al.

We investigate whether large language models can perform the creative hypothesis generation that human researchers regularly do. While the error rate is high, generative AI seems to be able to effectively structure vast amounts of scientific knowledge and provide interesting and testable hypotheses. The future scientific enterprise may include synergistic efforts with a swarm of "hypothesis machines", challenged by automated experimentation and adversarial peer reviews.

Chia-Wei Hsu, Nien-Ti Tsou, Yu-Cheng Chen et al.

Gradient-based optimization drives the unprecedented performance of modern deep neural network models across diverse applications. Adaptive algorithms have accelerated neural network training due to their rapid convergence rates; however, they struggle to find ``flat minima" reliably, resulting in suboptimal generalization compared to stochastic gradient descent (SGD). By revisiting various adaptive algorithms' mechanisms, we propose the Frankenstein optimizer, which combines their advantages. The proposed Frankenstein dynamically adjusts first- and second-momentum coefficients according to the optimizer's current state to directly maintain consistent learning dynamics and immediately reflect sudden gradient changes. Extensive experiments across several research domains such as computer vision, natural language processing, few-shot learning, and scientific simulations show that Frankenstein surpasses existing adaptive algorithms and SGD empirically regarding convergence speed and generalization performance. Furthermore, this research deepens our understanding of adaptive algorithms through centered kernel alignment analysis and loss landscape visualization during the learning process. Code is available at https://github.com/acctouhou/Frankenstein_optimizer

Ping Tuo, Jiale Chen, Ju Li

Elucidating reaction mechanisms hinges on efficiently generating transition states (TSs), products, and complete reaction networks. Recent generative models, such as diffusion models for TS sampling and sequence-based architectures for product generation, offer faster alternatives to quantum-chemistry searches. But diffusion models remain constrained by their stochastic differential equation (SDE) dynamics, which suffer from inefficiency and limited controllability. We show that flow matching, a deterministic ordinary differential (ODE) formulation, can replace SDE-based diffusion for molecular and reaction generation. We introduce MolGEN, a conditional flow-matching framework that learns an optimal transport path to transport Gaussian priors to target chemical distributions. On benchmarks used by TSDiff and OA-ReactDiff, MolGEN surpasses TS geometry accuracy and barrier-height prediction while reducing sampling to sub-second inference. MolGEN also supports open-ended product generation with competitive top-k accuracy and avoids mass/electron-balance violations common to sequence models. In a realistic test on the $γ$-ketohydroperoxide decomposition network, MolGEN yields higher fractions of valid and intended TSs with markedly fewer quantum-chemistry evaluations than string-based baselines. These results demonstrate that deterministic flow matching provides a unified, accurate, and computationally efficient foundation for molecular generative modeling, signaling that flow matching is the future for molecular generation across chemistry.