Chul‐Ho Lee

Xin Huang, Jongryool Kim, Bradley Rees et al.

Graph neural networks (GNNs) have received great attention due to their success in various graph-related learning tasks. Several GNN frameworks have then been developed for fast and easy implementation of GNN models. Despite their popularity, they are not well documented, and their implementations and system performance have not been well understood. In particular, unlike the traditional GNNs that are trained based on the entire graph in a full-batch manner, recent GNNs have been developed with different graph sampling techniques for mini-batch training of GNNs on large graphs. While they improve the scalability, their training times still depend on the implementations in the frameworks as sampling and its associated operations can introduce non-negligible overhead and computational cost. In addition, it is unknown how much the frameworks are 'eco-friendly' from a green computing perspective. In this paper, we provide an in-depth study of two mainstream GNN frameworks along with three state-of-the-art GNNs to analyze their performance in terms of runtime and power/energy consumption. We conduct extensive benchmark experiments at several different levels and present detailed analysis results and observations, which could be helpful for further improvement and optimization.

Minh Phu Vuong, Young-Ju Lee, Iván Ojeda-Ruiz et al.

Due to the growing concern about unsavory behaviors of machine learning models toward certain demographic groups, the notion of 'fairness' has recently drawn much attention from the community, thereby motivating the study of fairness in graph clustering. Fair graph clustering aims to partition the set of nodes in a graph into $k$ disjoint clusters such that the proportion of each protected group within each cluster is consistent with the proportion of that group in the entire dataset. It is, however, computationally challenging to incorporate fairness constraints into existing graph clustering algorithms, particularly for large graphs. To address this problem, we propose FairAD, a computationally efficient fair graph clustering method. It first constructs a new affinity matrix based on the notion of algebraic distance such that fairness constraints are imposed. A graph coarsening process is then performed on this affinity matrix to find representative nodes that correspond to $k$ clusters. Finally, a constrained minimization problem is solved to obtain the solution of fair clustering. Experiment results on the modified stochastic block model and six public datasets show that FairAD can achieve fair clustering while being up to 40 times faster compared to state-of-the-art fair graph clustering algorithms.

Xin Huang, Weipeng Zhuo, Minh Phu Vuong et al.

Graph neural networks have been shown successful in recent years. While different GNN architectures and training systems have been developed, GNN training on large-scale real-world graphs still remains challenging. Existing distributed systems load the entire graph in memory for graph partitioning, requiring a huge memory space to process large graphs and thus hindering GNN training on such large graphs using commodity workstations. In this paper, we propose CATGNN, a cost-efficient and scalable distributed GNN training system which focuses on scaling GNN training to billion-scale or larger graphs under limited computational resources. Among other features, it takes a stream of edges as input, instead of loading the entire graph in memory, for partitioning. We also propose a novel streaming partitioning algorithm named SPRING for distributed GNN training. We verify the correctness and effectiveness of CATGNN with SPRING on 16 open datasets. In particular, we demonstrate that CATGNN can handle the largest publicly available dataset with limited memory, which would have been infeasible without increasing the memory space. SPRING also outperforms state-of-the-art partitioning algorithms significantly, with a 50% reduction in replication factor on average.

Xin Huang, Chul-Ho Lee

Graph neural networks (GNNs) are powerful tools for solving graph-related problems. Distributed GNN frameworks and systems enhance the scalability of GNNs and accelerate model training, yet most are optimized for node classification. Their performance on link prediction remains underexplored. This paper demystifies distributed training of GNNs for link prediction by investigating the issue of performance degradation when each worker trains a GNN on its assigned partitioned subgraph without having access to the entire graph. We discover that the main sources of the issue come from not only the information loss caused by graph partitioning but also the ways of drawing negative samples during model training. While sharing the complete graph information with each worker resolves the issue and preserves link prediction accuracy, it incurs a high communication cost. We propose SpLPG, which effectively leverages graph sparsification to mitigate the issue of performance degradation at a reduced communication cost. Experiment results on several public real-world datasets demonstrate the effectiveness of SpLPG, which reduces the communication overhead by up to about 80% while mostly preserving link prediction accuracy.

Zhongyi Yu, Zhenghao Wu, Shuhan Zhong et al.

Missing values are a common problem that poses significant challenges to data analysis and machine learning. This problem necessitates the development of an effective imputation method to fill in the missing values accurately, thereby enhancing the overall quality and utility of the datasets. Existing imputation methods, however, fall short of explicitly considering the `missingness' information in the data during the embedding initialization stage and modeling the entangled feature and sample correlations during the learning process, thus leading to inferior performance. We propose M$^3$-Impute, which aims to explicitly leverage the missingness information and such correlations with novel masking schemes. M$^3$-Impute first models the data as a bipartite graph and uses a graph neural network to learn node embeddings, where the refined embedding initialization process directly incorporates the missingness information. They are then optimized through M$^3$-Impute's novel feature correlation unit (FRU) and sample correlation unit (SRU) that effectively captures feature and sample correlations for imputation. Experiment results on 25 benchmark datasets under three different missingness settings show the effectiveness of M$^3$-Impute by achieving 20 best and 4 second-best MAE scores on average.