Jin Zhu

Jin Zhu, Guang Yang, Pietro Lio

Super-resolution plays an essential role in medical imaging because it provides an alternative way to achieve high spatial resolutions and image quality with no extra acquisition costs. In the past few decades, the rapid development of deep neural networks has promoted super-resolution performance with novel network architectures, loss functions and evaluation metrics. Specifically, vision transformers dominate a broad range of computer vision tasks, but challenges still exist when applying them to low-level medical image processing tasks. This paper proposes an efficient vision transformer with residual dense connections and local feature fusion to achieve efficient single-image super-resolution (SISR) of medical modalities. Moreover, we implement a general-purpose perceptual loss with manual control for image quality improvements of desired aspects by incorporating prior knowledge of medical image segmentation. Compared with state-of-the-art methods on four public medical image datasets, the proposed method achieves the best PSNR scores of 6 modalities among seven modalities. It leads to an average improvement of $+0.09$ dB PSNR with only 38\% parameters of SwinIR. On the other hand, the segmentation-based perceptual loss increases $+0.14$ dB PSNR on average for SOTA methods, including CNNs and vision transformers. Additionally, we conduct comprehensive ablation studies to discuss potential factors for the superior performance of vision transformers over CNNs and the impacts of network and loss function components. The code will be released on GitHub with the paper published.

Zezhi Wang, Jin Zhu, Junxian Zhu et al.

Sparsity-constraint optimization has wide applicability in signal processing, statistics, and machine learning. Existing fast algorithms must burdensomely tune parameters, such as the step size or the implementation of precise stop criteria, which may be challenging to determine in practice. To address this issue, we develop an algorithm named Sparsity-Constraint Optimization via sPlicing itEration (SCOPE) to optimize nonlinear differential objective functions with strong convexity and smoothness in low dimensional subspaces. Algorithmically, the SCOPE algorithm converges effectively without tuning parameters. Theoretically, SCOPE has a linear convergence rate and converges to a solution that recovers the true support set when it correctly specifies the sparsity. We also develop parallel theoretical results without restricted-isometry-property-type conditions. We apply SCOPE's versatility and power to solve sparse quadratic optimization, learn sparse classifiers, and recover sparse Markov networks for binary variables. The numerical results on these specific tasks reveal that SCOPE perfectly identifies the true support set with a 10--1000 speedup over the standard exact solver, confirming SCOPE's algorithmic and theoretical merits. Our open-source Python package skscope based on C++ implementation is publicly available on GitHub, reaching a ten-fold speedup on the competing convex relaxation methods implemented by the cvxpy library.

Yanhang Zhang, Junxian Zhu, Jin Zhu et al.

Best subset of groups selection (BSGS) is the process of selecting a small part of non-overlapping groups to achieve the best interpretability on the response variable. It has attracted increasing attention and has far-reaching applications in practice. However, due to the computational intractability of BSGS in high-dimensional settings, developing efficient algorithms for solving BSGS remains a research hotspot. In this paper,we propose a group-splicing algorithm that iteratively detects the relevant groups and excludes the irrelevant ones. Moreover, coupled with a novel group information criterion, we develop an adaptive algorithm to determine the optimal model size. Under mild conditions, it is certifiable that our algorithm can identify the optimal subset of groups in polynomial time with high probability. Finally, we demonstrate the efficiency and accuracy of our methods by comparing them with several state-of-the-art algorithms on both synthetic and real-world datasets.

Jin Zhu, Wangwei Wu, Yuting Zhang et al.

Microsatellite instability (MSI) is associated with several tumor types and its status has become increasingly vital in guiding patient treatment decisions. However, in clinical practice, distinguishing MSI from its counterpart is challenging since the diagnosis of MSI requires additional genetic or immunohistochemical tests. In this study, interpretable pathological image analysis strategies are established to help medical experts to automatically identify MSI. The strategies only require ubiquitous Haematoxylin and eosin-stained whole-slide images and can achieve decent performance in the three cohorts collected from The Cancer Genome Atlas. The strategies provide interpretability in two aspects. On the one hand, the image-level interpretability is achieved by generating localization heat maps of important regions based on the deep learning network; on the other hand, the feature-level interpretability is attained through feature importance and pathological feature interaction analysis. More interestingly, both from the image-level and feature-level interpretability, color features and texture characteristics are shown to contribute the most to the MSI predictions. Therefore, the classification models under the proposed strategies can not only serve as an efficient tool for predicting the MSI status of patients, but also provide more insights to pathologists with clinical understanding.