Xi Fu

Xi Fu, Rui Liu, Aung Aung Phyo Wai et al.

Decoding gait dynamics from EEG signals presents significant challenges due to the complex spatial dependencies of motor processes, the need for accurate temporal and spectral feature extraction, and the scarcity of high-quality gait EEG datasets. To address these issues, we propose EEG2GAIT, a novel hierarchical graph-based model that captures multi-level spatial embeddings of EEG channels using a Hierarchical Graph Convolutional Network (GCN) Pyramid. To further improve decoding accuracy, we introduce a Hybrid Temporal-Spectral Reward (HTSR) loss function, which combines time-domain, frequency-domain, and reward-based loss components. Moreover, we contribute a new Gait-EEG Dataset (GED), consisting of synchronized EEG and lower-limb joint angle data collected from 50 participants over two lab visits. Validation experiments on both the GED and the publicly available Mobile Brain-body imaging (MoBI) dataset demonstrate that EEG2GAIT outperforms state-of-the-art methods and achieves the best joint angle prediction. Ablation studies validate the contributions of the hierarchical GCN modules and HTSR Loss, while saliency maps reveal the significance of motor-related brain regions in decoding tasks. These findings underscore EEG2GAIT's potential for advancing brain-computer interface applications, particularly in lower-limb rehabilitation and assistive technologies.

Xi Fu, Weibang Jiang, Rui Liu et al.

Accurate decoding of lower-limb motion from EEG signals is essential for advancing brain-computer interface (BCI) applications in movement intent recognition and control. However, challenges persist in achieving causal, phase-consistent predictions and in modeling both inter- and intra-subject variability. To address these issues, we propose NeuroDyGait, a domain-generalizable EEG-to-motion decoding framework that leverages structured contrastive representation learning and relational domain modeling. The proposed method employs relative contrastive learning to achieve semantic alignment between EEG and motion embeddings. Furthermore, a multi-cycle gait reconstruction objective is introduced to enforce temporal coherence and maintain biomechanical consistency. To promote inter-session generalization, during fine-tuning, a domain dynamic decoding mechanism adaptively assigns session-specific prediction heads and learns to mix their outputs based on inter-session relationships. NeuroDyGait enables zero-shot motion prediction for unseen individuals without requiring adaptation and achieves superior performance in cross-subject gait decoding on benchmark datasets. Additionally, it demonstrates strong phase-detection capabilities even without explicit phase supervision during training. These findings highlight the potential of relational domain learning in enabling scalable, target-free deployment of BCIs.

Shentong Mo, Xi Fu, Chenyang Hong et al.

In the genome biology research, regulatory genome modeling is an important topic for many regulatory downstream tasks, such as promoter classification, transaction factor binding sites prediction. The core problem is to model how regulatory elements interact with each other and its variability across different cell types. However, current deep learning methods often focus on modeling genome sequences of a fixed set of cell types and do not account for the interaction between multiple regulatory elements, making them only perform well on the cell types in the training set and lack the generalizability required in biological applications. In this work, we propose a simple yet effective approach for pre-training genome data in a multi-modal and self-supervised manner, which we call GeneBERT. Specifically, we simultaneously take the 1d sequence of genome data and a 2d matrix of (transcription factors x regions) as the input, where three pre-training tasks are proposed to improve the robustness and generalizability of our model. We pre-train our model on the ATAC-seq dataset with 17 million genome sequences. We evaluate our GeneBERT on regulatory downstream tasks across different cell types, including promoter classification, transaction factor binding sites prediction, disease risk estimation, and splicing sites prediction. Extensive experiments demonstrate the effectiveness of multi-modal and self-supervised pre-training for large-scale regulatory genomics data.