Xin Chen

Ruizhe Li, Grazziela Figueredo, Dorothee Auer et al.

Deformable image registration (alignment) is highly sought after in numerous clinical applications, such as computer aided diagnosis and disease progression analysis. Deep Convolutional Neural Network (DCNN)-based image registration methods have demonstrated advantages in terms of registration accuracy and computational speed. However, while most methods excel at global alignment, they often perform worse in aligning local regions. To address this challenge, this paper proposes a mask-guided encoder-decoder DCNN-based image registration method, named as MrRegNet. This approach employs a multi-resolution encoder for feature extraction and subsequently estimates multi-resolution displacement fields in the decoder to handle the substantial deformation of images. Furthermore, segmentation masks are employed to direct the model's attention toward aligning local regions. The results show that the proposed method outperforms traditional methods like Demons and a well-known deep learning method, VoxelMorph, on a public 3D brain MRI dataset (OASIS) and a local 2D brain MRI dataset with large deformations. Importantly, the image alignment accuracies are significantly improved at local regions guided by segmentation masks. Github link:https://github.com/ruizhe-l/MrRegNet.

Ruizhe Li, Grazziela Figueredo, Dorothee Auer et al.

Semi-supervised learning, which leverages both annotated and unannotated data, is an efficient approach for medical image segmentation, where obtaining annotations for the whole dataset is time-consuming and costly. Traditional semi-supervised methods primarily focus on extracting features and learning data distributions from unannotated data to enhance model training. In this paper, we introduce a novel approach incorporating an image registration model to generate pseudo-labels for the unannotated data, producing more geometrically correct pseudo-labels to improve the model training. Our method was evaluated on a 2D brain data set, showing excellent performance even using only 1\% of the annotated data. The results show that our approach outperforms conventional semi-supervised segmentation methods (e.g. teacher-student model), particularly in a low percentage of annotation scenario. GitHub: https://github.com/ruizhe-l/UniSegReg.

Xin Chen, Jie Hu, Xiawu Zheng et al.

Semi-Supervised Instance Segmentation (SSIS) aims to leverage an amount of unlabeled data during training. Previous frameworks primarily utilized the RGB information of unlabeled images to generate pseudo-labels. However, such a mechanism often introduces unstable noise, as a single instance can display multiple RGB values. To overcome this limitation, we introduce a Depth-Guided (DG) SSIS framework. This framework uses depth maps extracted from input images, which represent individual instances with closely associated distance values, offering precise contours for distinct instances. Unlike RGB data, depth maps provide a unique perspective, making their integration into the SSIS process complex. To this end, we propose Depth Feature Fusion, which integrates features extracted from depth estimation. This integration allows the model to understand depth information better and ensure its effective utilization. Additionally, to manage the variability of depth images during training, we introduce the Depth Controller. This component enables adaptive adjustments of the depth map, enhancing convergence speed and dynamically balancing the loss weights between RGB and depth maps. Extensive experiments conducted on the COCO and Cityscapes datasets validate the efficacy of our proposed method. Our approach establishes a new benchmark for SSIS, outperforming previous methods. Specifically, our DG achieves 22.29%, 31.47%, and 35.14% mAP for 1%, 5%, and 10% labeled data on the COCO dataset, respectively.