Jongwoo Kim

Jongwoo Kim, Seongyeub Chu, Hyeongmin Park et al.

Recent advancements in graph neural networks (GNNs) and heterogeneous GNNs (HGNNs) have advanced node embeddings and relationship learning for various tasks. However, existing methods often rely on domain-specific predefined meta-paths, which are coarse-grained and focus solely on aspects like node type, limiting their ability to capture complex interactions. We introduce MF2Vec, a model that uses multi-faceted (fine-grained) paths instead of predefined meta-paths. MF2Vec extracts paths via random walks and generates multi-faceted vectors, ignoring predefined schemas. This method learns diverse aspects of nodes and their relationships, constructs a homogeneous network, and creates node embeddings for classification, link prediction, and clustering. Extensive experiments show that MF2Vec outperforms existing methods, offering a more flexible and comprehensive framework for analyzing complex networks. The code is available at https://anonymous.4open.science/r/MF2Vec-6ABC.

Jongwoo Kim, Bryan Wong, Huazhu Fu et al.

Cancer diagnosis has greatly benefited from the integration of whole-slide images (WSIs) with multiple instance learning (MIL), enabling high-resolution analysis of tissue morphology. Graph-based MIL (GNN-MIL) approaches have emerged as powerful solutions for capturing contextual information in WSIs, thereby improving diagnostic accuracy. However, WSIs require significant computational and infrastructural resources, limiting accessibility in resource-constrained settings. Conventional light microscopes offer a cost-effective alternative, but applying GNN-MIL to such data is challenging due to extensive redundant images and missing spatial coordinates, which hinder contextual learning. To address these issues, we introduce MicroMIL, the first weakly-supervised MIL framework specifically designed for images acquired from conventional light microscopes. MicroMIL leverages a representative image extractor (RIE) that employs deep cluster embedding (DCE) and hard Gumbel-Softmax to dynamically reduce redundancy and select representative images. These images serve as graph nodes, with edges computed via cosine similarity, eliminating the need for spatial coordinates while preserving contextual information. Extensive experiments on a real-world colon cancer dataset and the BreakHis dataset demonstrate that MicroMIL achieves state-of-the-art performance, improving both diagnostic accuracy and robustness to redundancy. The code is available at https://github.com/kimjongwoo-cell/MicroMIL

Willmer Rafell Quinones Robles, Sakonporn Noree, Young Sin Ko et al.

Deep learning has shown strong potential in cancer classification from whole-slide images (WSIs), but the need for extensive expert annotations often limits its success. Annotation-free approaches, such as multiple instance learning (MIL) and self-supervised learning (SSL), have emerged as promising alternatives to traditional annotation-based methods. However, conventional SSL methods typically rely on synthetic data augmentations, which may fail to capture the spatial structure critical to histopathology. In this work, we propose a spatial context-driven positive pair sampling strategy that enhances SSL by leveraging the morphological coherence of spatially adjacent patches within WSIs. Our method is modular and compatible with established joint embedding SSL frameworks, including Barlow Twins, BYOL, VICReg, and DINOv2. We evaluate its effectiveness on both slide-level classification using MIL and patch-level linear probing. Experiments across four datasets demonstrate consistent performance improvements, with accuracy gains of 5\% to 10\% compared to standard augmentation-based sampling. These findings highlight the value of spatial context in improving representation learning for computational pathology and provide a biologically meaningful enhancement for pretraining models in annotation-limited settings. The code is available at https://anonymous.4open.science/r/contextual-pairs-E72F/.

Seongyeub Chu, Jongwoo Kim, Mun Yong Yi

MOOC recommendation systems have received increasing attention to help learners navigate and select preferred learning content. Traditional methods such as collaborative filtering and content-based filtering suffer from data sparsity and over-specialization. To alleviate these limitations, graph-based approaches have been proposed; however, they still rely heavily on manually predefined metapaths, which often capture only superficial structural relationships and impose substantial burdens on domain experts as well as significant engineering costs. To overcome these limitations, we propose AMR (Aspect-aware MOOC Recommendation), a novel framework that models path-specific multiple aspects by embedding the semantic content of nodes within each metapath. AMR automatically discovers metapaths through bi-directional walks, derives aspect-aware path representations using a bi-LSTM-based encoder, and incorporates these representations as edge features in the learner-learner and KC-KC subgraphs to achieve fine-grained semantically informed KC recommendations. Extensive experiments on the large-scale MOOCCube and PEEK datasets show that AMR consistently outperforms state-of-the-art graph neural network baselines across key metrics such as HR@K and nDCG@K. Further analysis confirms that AMR effectively captures rich path-specific aspect information, allowing more accurate recommendations than those methods that rely solely on predefined metapaths. The code will be available upon accepted.