Jina Kim

Zekun Li, Jina Kim, Yao-Yi Chiang et al.

Named geographic entities (geo-entities for short) are the building blocks of many geographic datasets. Characterizing geo-entities is integral to various application domains, such as geo-intelligence and map comprehension, while a key challenge is to capture the spatial-varying context of an entity. We hypothesize that we shall know the characteristics of a geo-entity by its surrounding entities, similar to knowing word meanings by their linguistic context. Accordingly, we propose a novel spatial language model, SpaBERT, which provides a general-purpose geo-entity representation based on neighboring entities in geospatial data. SpaBERT extends BERT to capture linearized spatial context, while incorporating a spatial coordinate embedding mechanism to preserve spatial relations of entities in the 2-dimensional space. SpaBERT is pretrained with masked language modeling and masked entity prediction tasks to learn spatial dependencies. We apply SpaBERT to two downstream tasks: geo-entity typing and geo-entity linking. Compared with the existing language models that do not use spatial context, SpaBERT shows significant performance improvement on both tasks. We also analyze the entity representation from SpaBERT in various settings and the effect of spatial coordinate embedding.

Jina Kim, Zekun Li, Yijun Lin et al.

Scanned historical maps in libraries and archives are valuable repositories of geographic data that often do not exist elsewhere. Despite the potential of machine learning tools like the Google Vision APIs for automatically transcribing text from these maps into machine-readable formats, they do not work well with large-sized images (e.g., high-resolution scanned documents), cannot infer the relation between the recognized text and other datasets, and are challenging to integrate with post-processing tools. This paper introduces the mapKurator system, an end-to-end system integrating machine learning models with a comprehensive data processing pipeline. mapKurator empowers automated extraction, post-processing, and linkage of text labels from large numbers of large-dimension historical map scans. The output data, comprising bounding polygons and recognized text, is in the standard GeoJSON format, making it easily modifiable within Geographic Information Systems (GIS). The proposed system allows users to quickly generate valuable data from large numbers of historical maps for in-depth analysis of the map content and, in turn, encourages map findability, accessibility, interoperability, and reusability (FAIR principles). We deployed the mapKurator system and enabled the processing of over 60,000 maps and over 100 million text/place names in the David Rumsey Historical Map collection. We also demonstrated a seamless integration of mapKurator with a collaborative web platform to enable accessing automated approaches for extracting and linking text labels from historical map scans and collective work to improve the results.

Heejun Lee, Jina Kim, Jeffrey Willette et al.

The transformer architecture has driven breakthroughs in recent years on tasks which require modeling pairwise relationships between sequential elements, as is the case in natural language understanding. However, long seqeuences pose a problem due to the quadratic complexity of the attention operation. Previous research has aimed to lower the complexity by sparsifying or linearly approximating the attention matrix. Yet, these approaches cannot straightforwardly distill knowledge from a teacher's attention matrix and often require complete retraining from scratch. Furthermore, previous sparse and linear approaches lose interpretability if they cannot produce full attention matrices. To address these challenges, we propose SEA: Sparse linear attention with an Estimated Attention mask. SEA estimates the attention matrix with linear complexity via kernel-based linear attention, then subsequently creates a sparse attention matrix with a top-k selection to perform a sparse attention operation. For language modeling tasks (Wikitext2), previous linear and sparse attention methods show roughly two-fold worse perplexity scores over the quadratic OPT-1.3B baseline, while SEA achieves better perplexity than OPT-1.3B, using roughly half the memory of OPT-1.3B, providing interpretable attention matrix. We believe that our work will have a large practical impact, as it opens the possibility of running large transformers on resource-limited devices with less memory.

Haoji Hu, Jina Kim, Jinwei Zhou et al.

Trajectory anomaly detection is crucial for effective decision-making in urban and human mobility management. Existing methods of trajectory anomaly detection generally focus on training a trajectory generative model and evaluating the likelihood of reconstructing a given trajectory. However, previous work often lacks important contextual information on the trajectory, such as the agent's information (e.g., agent ID) or geographic information (e.g., Points of Interest (POI)), which could provide additional information on accurately capturing anomalous behaviors. To fill this gap, we propose a context-aware anomaly detection approach that models contextual information related to trajectories. The proposed method is based on a trajectory reconstruction framework guided by contextual factors such as agent ID and contextual POI embedding. The injection of contextual information aims to improve the performance of anomaly detection. We conducted experiments in two cities and demonstrated that the proposed approach significantly outperformed existing methods by effectively modeling contextual information. Overall, this paper paves a new direction for advancing trajectory anomaly detection.

Jina Kim, Jeffrey Willette, Bruno Andreis et al.

A widely recognized limitation of molecular prediction models is their reliance on structures observed in the training data, resulting in poor generalization to out-of-distribution compounds. Yet in drug discovery, the compounds most critical for advancing research often lie beyond the training set, making the bias toward the training data particularly problematic. This mismatch introduces substantial covariate shift, under which standard deep learning models produce unstable and inaccurate predictions. Furthermore, the scarcity of labeled data-stemming from the onerous and costly nature of experimental validation-further exacerbates the difficulty of achieving reliable generalization. To address these limitations, we propose a novel bilevel optimization approach that leverages unlabeled data to interpolate between in-distribution (ID) and out-of-distribution (OOD) data, enabling the model to learn how to generalize beyond the training distribution. We demonstrate significant performance gains on challenging real-world datasets with substantial covariate shift, supported by t-SNE visualizations highlighting our interpolation method.

Junyi Xie, Jina Kim, Yao-Yi Chiang et al.

Traditional anomaly detection in human mobility has primarily focused on trajectory-level analysis, identifying statistical outliers or spatiotemporal inconsistencies across aggregated movement traces. However, detecting individual-level anomalies, i.e., unusual deviations in a person's mobility behavior relative to their own historical patterns, within datasets encompassing large populations remains a significant challenge. In this paper, we present BeSTAD (Behavior-aware Spatio-Temporal Anomaly Detection for Human Mobility Data), an unsupervised framework that captures individualized behavioral signatures across large populations and uncovers fine-grained anomalies by jointly modeling spatial context and temporal dynamics. BeSTAD learns semantically enriched mobility representations that integrate location meaning and temporal patterns, enabling the detection of subtle deviations in individual movement behavior. BeSTAD further employs a behavior-cluster-aware modeling mechanism that builds personalized behavioral profiles from normal activity and identifies anomalies through cross-period behavioral comparison with consistent semantic alignment. Building on prior work in mobility behavior clustering, this approach enables not only the detection of behavioral shifts and deviations from established routines but also the identification of individuals exhibiting such changes within large-scale mobility datasets. By learning individual behaviors directly from unlabeled data, BeSTAD advances anomaly detection toward personalized and interpretable mobility analysis.

Junyi Xie, Yuankun Jiao, Jina Kim et al.

Inferring demographic attributes such as age, sex, or income level from human mobility patterns enables critical applications such as targeted public health interventions, equitable urban planning, and personalized transportation services. Existing mobility-based demographic inference studies heavily rely on large-scale trajectory data with demographic labels, leading to limited interpretability and poor generalizability across different datasets and user groups. We propose HiCoTraj (Zero-Shot Demographic Reasoning via Hierarchical Chain-of-Thought Prompting from Trajectory), a framework that leverages LLMs' zero-shot learning and semantic understanding capabilities to perform demographic inference without labeled training data. HiCoTraj transforms trajectories into semantically rich, natural language representations by creating detailed activity chronicles and multi-scale visiting summaries. Then HiCoTraj uses a novel hierarchical chain of thought reasoning to systematically guide LLMs through three cognitive stages: factual feature extraction, behavioral pattern analysis, and demographic inference with structured output. This approach addresses the scarcity challenge of labeled demographic data while providing transparent reasoning chains. Experimental evaluation on real-world trajectory data demonstrates that HiCoTraj achieves competitive performance across multiple demographic attributes in zero-shot scenarios.

Lee Hyun, Sohee Yoon, Jinwoo Park et al.

AI-driven materials discovery that couples automated experimentation with algorithmic decision-making requires process aware recipe to property predictors that are accurate, calibrated, and physically admissible. We approach this as a reasoning problem with large reasoning models (LRMs). To instill reasoning capability into language models, we curate reasoning traces from a teacher model to train a student model. However, most training pipelines select reasoning traces using binary correctness or learned preference signals that poorly reflect physical admissibility. We introduce Physics-aware Rejection Sampling (PaRS), a training-time trace selection scheme that favors traces consistent with fundamental physics and numerically close to targets, with lightweight halting to control compute. We instantiate our framework with a large student model fine-tuned on traces synthesized by a larger teacher model, and evaluate under matched token budgets against various rejection sampling baselines. Our method improves accuracy and calibration, reduces physics-violation rates, and lowers sampling cost relative to baselines. These results indicate that modest, domain-aware constraints combined with trace-level selection provide a practical path toward reliable, efficient LRMs for process-aware property prediction and closed-loop materials design.

Jina Kim

Artificial neural networks (ANNs) continue to face challenges in continual learning, particularly due to catastrophic forgetting, the loss of previously learned knowledge when acquiring new tasks. Inspired by memory consolidation in the human brain, we investigate the internal replay mechanism proposed by~\citep{brain_inspired_replay1}, which reactivates latent representations of prior experiences during learning. As internal replay was identified as the most influential component among the brain-inspired mechanisms in their framework, it serves as the central focus of our in-depth investigation. Using the CIFAR-100 dataset in a class-incremental setting, we evaluate the effectiveness of internal replay, both in isolation and in combination with Synaptic Intelligence (SI). Our experiments show that internal replay significantly mitigates forgetting, especially when paired with SI, but at the cost of reduced initial task accuracy, highlighting a trade-off between memory stability and learning plasticity. Further analyses using log-likelihood distributions, reconstruction errors, silhouette scores, and UMAP projections reveal that internal replay increases representational overlap in latent space, potentially limiting task-specific differentiation. These results underscore the limitations of current brain-inspired methods and suggest future directions for balancing retention and adaptability in continual learning systems.

Yukyung Lee, Jina Kim, Pilsung Kang

The system log generated in a computer system refers to large-scale data that are collected simultaneously and used as the basic data for determining errors, intrusion and abnormal behaviors. The aim of system log anomaly detection is to promptly identify anomalies while minimizing human intervention, which is a critical problem in the industry. Previous studies performed anomaly detection through algorithms after converting various forms of log data into a standardized template using a parser. Particularly, a template corresponding to a specific event should be defined in advance for all the log data using which the information within the log key may get lost. In this study, we propose LAnoBERT, a parser free system log anomaly detection method that uses the BERT model, exhibiting excellent natural language processing performance. The proposed method, LAnoBERT, learns the model through masked language modeling, which is a BERT-based pre-training method, and proceeds with unsupervised learning-based anomaly detection using the masked language modeling loss function per log key during the test process. In addition, we also propose an efficient inference process to establish a practically applicable pipeline to the actual system. Experiments on three well-known log datasets, i.e., HDFS, BGL, and Thunderbird, show that not only did LAnoBERT yield a higher anomaly detection performance compared to unsupervised learning-based benchmark models, but also it resulted in a comparable performance with supervised learning-based benchmark models.