Yousef A. Radwan

Yousef A. Radwan, Xuhui Liu, Kilichbek Haydarov et al.

Large language models (LLMs) have emerged as powerful representation learners whose internal features increasingly align with human cognition. We study whether modern LLMs can serve as a lens for understanding neural representations in the human brain, focusing on emotional valence in EEG. We first build a one-dimensional valence direction, the V-axis, from modern LLMs using only nine emotion-evocative sentences. We validate it through zero-shot transfer to sentiment benchmarks and cross-model consistency across fourteen LLMs. We then show that this LLM-derived direction maps onto human neural activity. On a public EEG cohort of 123 subjects watching affective videos, a single linear projection on EEG features tracks the V-axis position of each stimulus. Moreover, 36 EEG emotion classifiers trained without exposure to the V-axis spontaneously rediscover the same direction in their internal representations, suggesting that the same valence structure emerges in both language models and human electrophysiology. Yet this convergence does not provide an effective training signal. We test twenty-five alignment strategies, including knowledge distillation, representational similarity, contrastive, and topographic losses; none improve decoding, and sixteen significantly reduce accuracy. We formalize this result as the saturation regularity: once task labels alone drive a brain-decoding network onto the target direction, additional supervision mainly distorts an already-saturated basin, while the load-bearing within-class residual receives little useful gradient. This regularity also indicates where improvement should come from: the residual subspace unreachable by supervision. Motivated by this insight, we ensemble across residual diversity rather than supervising the basin, improving balanced accuracy by 10.5% over the prior best on FACED, with the same effect replicated on SEED-V.

Yousef A. Radwan, Yao Li, Qing Qing et al.

Biomedical knowledge graphs underwrite drug repurposing and clinical decision support, yet the upstream ontologies they depend on update on independent cycles that add millions of edges and deprecate hundreds of thousands more between releases. Yet existing continual graph learning has been studied almost exclusively on synthetic random splits of static, generic KGs, a regime that cannot reproduce the asynchronous, structured evolution real biomedical KGs undergo. To this end, we introduce PrimeKG-CL, a CGL benchmark built from nine authoritative biomedical databases (129K+ nodes, 8.1M+ edges, 10 node types, 30 relation types) with two genuine temporal snapshots (June 2021, July 2023; 5.83M edges added, 889K removed, 7.21M persistent), 10 entity-type-grouped tasks, multimodal node features, and a per-task persistent/added/removed test stratification. On three tasks (biomedical relationship prediction, entity classification, KGQA), we evaluate six CL strategies across four KGE decoders, plus LKGE, an LLM-RAG agent, and CMKL. We find that decoder choice and continual learning strategy interact strongly: no single strategy performs best across all decoders, and mismatched combinations can significantly degrade performance. Moreover, only DistMult exhibits a clear separation between persistent and deprecated knowledge, indicating that standard metrics conflate retention of still-valid facts with failure to forget outdated ones; this effect is absent under RotatE. In addition, multimodal features improve entity-level tasks by up to 60%, and a recent CKGE framework (IncDE) failed to scale to our 5.67M-triple base task across five attempts up to 350GB RAM. Data, pipeline, baselines, and the stratified split are released openly. Dataset:huggingface.co/datasets/yradwan147/PrimeKGCL|Code:github.com/yradwan147/primekg-cl-neurips2026

Yousef A. Radwan, Yao Li, Qing Qing et al.

Biomedical knowledge graphs are increasingly large, dynamic, and multimodal, driven by rapid advances in biotechnology such as high-throughput sequencing. Machine learning models can infer previously unobserved biomedical relationships and characterize biomedical entities in these graphs, but existing knowledge graph embedding methods and their continual learning extensions either assume static graph structure or fail to exploit multimodal information under evolving data distributions. They also apply uniform regularization across all model parameters, ignoring that different modalities may exhibit distinct forgetting dynamics as the graph evolves. We propose the Continual Multimodal Knowledge Graph Learner (CMKL), a CL framework for biomedical KGs that natively encodes structure, text, and molecules, fuses them through a Mixture-of-Experts (MoE) router, and protects previously learned knowledge with standard EWC regularization and a K-means-diverse multimodal replay buffer. We evaluate CMKL on a 129K-entity biomedical continual benchmark with 10 tasks. On continual biomedical entity classification, CMKL reaches AP 0.591 versus 0.370 for the strongest structural baseline, a 60% gain that is driven by access to multimodal features and preserved across the sequence with near-zero forgetting (AF 0.008). On continual relationship prediction, CMKL reaches AP $0.062$, matching Naive Sequential and EWC (0.058) within seed noise and outperforming Joint Training (0.047, p=0.045) and LKGE (0.039). A frozen-text ablation reaches AP 0.136, more than double any jointly trained model, yet that signal is unreachable by margin-ranking gradients: the greedy-modality asymmetry lives at the representation level, not the fusion level, and MoE routing manages it by suppressing the unreachable modality without forcing it through a learned bottleneck. Code: github.com/yradwan147/cmkl-neurips2026

Yahia Battach, Abdulwahab Felemban, Faizan Farooq Khan et al.

Coral reefs are rapidly declining due to anthropogenic pressures such as climate change, underscoring the urgent need for scalable, automated monitoring. We introduce ReefNet, a large public coral reef image dataset with point-label annotations mapped to the World Register of Marine Species (WoRMS). ReefNet aggregates imagery from 76 curated CoralNet sources and an additional site from Al Wajh in the Red Sea, totaling approximately 925000 genus-level hard coral annotations with expert-verified labels. Unlike prior datasets, which are often limited by size, geography, or coarse labels and are not ML-ready, ReefNet offers fine-grained, taxonomically mapped labels at a global scale to WoRMS. We propose two evaluation settings: (i) a within-source benchmark that partitions each source's images for localized evaluation, and (ii) a cross-source benchmark that withholds entire sources to test domain generalization. We analyze both supervised and zero-shot classification performance on ReefNet and find that while supervised within-source performance is promising, supervised performance drops sharply across domains, and performance is low across the board for zero-shot models, especially for rare and visually similar genera. This provides a challenging benchmark intended to catalyze advances in domain generalization and fine-grained coral classification. We will release our dataset, benchmarking code, and pretrained models to advance robust, domain-adaptive, global coral reef monitoring and conservation.

Yousef A. Radwan, Gabriel Kronberger, Stephan Winkler

Symbolic regression is a machine learning method with the goal to produce interpretable results. Unlike other machine learning methods such as, e.g. random forests or neural networks, which are opaque, symbolic regression aims to model and map data in a way that can be understood by scientists. Recent advancements, have attempted to bridge the gap between these two fields; new methodologies attempt to fuse the mapping power of neural networks and deep learning techniques with the explanatory power of symbolic regression. In this paper, we examine these new emerging systems and test the performance of an end-to-end transformer model for symbolic regression versus the reigning traditional methods based on genetic programming that have spearheaded symbolic regression throughout the years. We compare these systems on novel datasets to avoid bias to older methods who were improved on well-known benchmark datasets. Our results show that traditional GP methods as implemented e.g., by Operon still remain superior to two recently published symbolic regression methods.