Abdullah Imran

Tyler Ward, Abdullah Imran

Functional connectivity (FC) analysis, a valuable tool for computer-aided brain disorder diagnosis, traditionally relies on atlas-based parcellation. However, issues relating to selection bias and a lack of regard for subject specificity can arise as a result of such parcellations. Addressing this, we propose ABFR-KAN, a transformer-based classification network that incorporates novel advanced brain function representation components with the power of Kolmogorov-Arnold Networks (KANs) to mitigate structural bias, improve anatomical conformity, and enhance the reliability of FC estimation. Extensive experiments on the ABIDE I dataset, including cross-site evaluation and ablation studies across varying model backbones and KAN configurations, demonstrate that ABFR-KAN consistently outperforms state-of-the-art baselines for autism spectrum distorder (ASD) classification. Our code is available at https://github.com/tbwa233/ABFR-KAN.

Tyler Ward, Xiaoqin Wang, Braxton McFarland et al.

Complete removal of cancer tumors with a negative specimen margin during lumpectomy is essential in reducing breast cancer recurrence. However, 2D specimen radiography (SR), the current method used to assess intraoperative specimen margin status, has limited accuracy, resulting in nearly a quarter of patients requiring additional surgery. To address this, we propose a novel deep learning framework combining the Segment Anything Model (SAM) with Forward-Forward Contrastive Learning (FFCL), a pre-training strategy leveraging both local and global contrastive learning for patch-level classification of SR images. After annotating SR images with regions of known maligancy, non-malignant tissue, and pathology-confirmed margins, we pre-train a ResNet-18 backbone with FFCL to classify margin status, then reconstruct coarse binary masks to prompt SAM for refined tumor margin segmentation. Our approach achieved an AUC of 0.8455 for margin classification and segmented margins with a 27.4% improvement in Dice similarity over baseline models, while reducing inference time to 47 milliseconds per image. These results demonstrate that FFCL-SAM significantly enhances both the speed and accuracy of intraoperative margin assessment, with strong potential to reduce re-excision rates and improve surgical outcomes in breast cancer treatment. Our code is available at https://github.com/tbwa233/FFCL-SAM/.

Nusrat Munia, Abdullah Imran

Generative models, especially Diffusion Models, have demonstrated remarkable capability in generating high-quality synthetic data, including medical images. However, traditional class-conditioned generative models often struggle to generate images that accurately represent specific medical categories, limiting their usefulness for applications such as skin cancer diagnosis. To address this problem, we propose a classification-induced diffusion model, namely, Class-N-Diff, to simultaneously generate and classify dermoscopic images. Our Class-N-Diff model integrates a classifier within a diffusion model to guide image generation based on its class conditions. Thus, the model has better control over class-conditioned image synthesis, resulting in more realistic and diverse images. Additionally, the classifier demonstrates improved performance, highlighting its effectiveness for downstream diagnostic tasks. This unique integration in our Class-N-Diff makes it a robust tool for enhancing the quality and utility of diffusion model-based synthetic dermoscopic image generation. Our code is available at https://github.com/Munia03/Class-N-Diff.

Tyler Ward, Abdullah Imran

Recent advances in promptable segmentation, such as the Segment Anything Model (SAM), have enabled flexible, high-quality mask generation across a wide range of visual domains. However, SAM and similar models remain fundamentally deterministic, producing a single segmentation per object per prompt, and fail to capture the inherent ambiguity present in many real-world tasks. This limitation is particularly troublesome in medical imaging, where multiple plausible segmentations may exist due to annotation uncertainty or inter-expert variability. In this paper, we introduce Probabilistic SAM, a probabilistic extension of SAM that models a distribution over segmentations conditioned on both the input image and prompt. By incorporating a latent variable space and training with a variational objective, our model learns to generate diverse and plausible segmentation masks reflecting the variability in human annotations. The architecture integrates a prior and posterior network into the SAM framework, allowing latent codes to modulate the prompt embeddings during inference. The latent space allows for efficient sampling during inference, enabling uncertainty-aware outputs with minimal overhead. We evaluate Probabilistic SAM on the public LIDC-IDRI lung nodule dataset and demonstrate its ability to produce diverse outputs that align with expert disagreement, outperforming existing probabilistic baselines on uncertainty-aware metrics. Our code is available at: https://github.com/tbwa233/Probabilistic-SAM/.

Han Dai, Soumyakant Priyadarshan, Abdullah Imran et al.

When source code or the original toolchain is unavailable, patching binaries is difficult because it requires editing low-level assembly code directly. As an alternative, one can decompile the binary, apply the patch at the source level, and then recompile the modified code. However, as this paper demonstrates, this workflow is hindered by pervasive syntactic and semantic inaccuracies in the output of modern decompilers, many of which prior work has overlooked. To address these challenges, we present SCRIBE, a patching framework that handles syntactic and semantic issues in decompiled code, improving both recompilation success and correctness. SCRIBE's novel "binary-aware" recompilation approach repairs semantic inaccuracies in decompiler output by leveraging information extracted directly from the original binary. In our evaluation, SCRIBE resolved approximately 81% of previously incorrect functions produced by the Hex-Rays decompiler, demonstrating the effectiveness of its approach. Moreover, we show that, using SCRIBE, it is possible to patch 13 of 14 real-world CVEs without access to the original source code and without performing any manual binary editing. To further validate our findings, we conducted a user study with 18 participants. Using SCRIBE, participants achieved 100% patching success, compared to 3.7% without it. Finally, we asked three large language models to generate source-level patches via SCRIBE; all three achieved 100% success when using the framework, demonstrating its potential to enable fully automated patching. Overall, these results indicate that SCRIBE makes source-level patching of binaries accessible and reliable, even without access to the original source.

Kazi Ramisa Rifa, Jie Zhang, Abdullah Imran

Prompt-based methods, which encode medical priors through descriptive text, have been only minimally explored for CT Image Quality Assessment (IQA). While such prompts can embed prior knowledge about diagnostic quality, they often introduce bias by reflecting idealized definitions that may not hold under real-world degradations such as noise, motion artifacts, or scanner variability. To address this, we propose the Context-Aware Prompt-guided Image Quality Assessment (CAP-IQA) framework, which integrates text-level priors with instance-level context prompts and applies causal debiasing to separate idealized knowledge from factual, image-specific degradations. Our framework combines a CNN-based visual encoder with a domain-specific text encoder to assess diagnostic visibility, anatomical clarity, and noise perception in abdominal CT images. The model leverages radiology-style prompts and context-aware fusion to align semantic and perceptual representations. On the 2023 LDCTIQA challenge benchmark, CAP-IQA achieves an overall correlation score of 2.8590 (sum of PLCC, SROCC, and KROCC), surpassing the top-ranked leaderboard team (2.7427) by 4.24%. Moreover, our comprehensive ablation experiments confirm that prompt-guided fusion and the simplified encoder-only design jointly enhance feature alignment and interpretability. Furthermore, evaluation on an in-house dataset of 91,514 pediatric CT images demonstrates the true generalizability of CAP-IQA in assessing perceptual fidelity in a different patient population.