Md. Zakir Hossain

CV
h-index13
3papers
47citations
Novelty38%
AI Score40

3 Papers

17.6CVOct 30, 2022Code
Exemplar Guided Deep Neural Network for Spatial Transcriptomics Analysis of Gene Expression Prediction

Yan Yang, Md Zakir Hossain, Eric A Stone et al.

Spatial transcriptomics (ST) is essential for understanding diseases and developing novel treatments. It measures gene expression of each fine-grained area (i.e., different windows) in the tissue slide with low throughput. This paper proposes an Exemplar Guided Network (EGN) to accurately and efficiently predict gene expression directly from each window of a tissue slide image. We apply exemplar learning to dynamically boost gene expression prediction from nearest/similar exemplars of a given tissue slide image window. Our EGN framework composes of three main components: 1) an extractor to structure a representation space for unsupervised exemplar retrievals; 2) a vision transformer (ViT) backbone to progressively extract representations of the input window; and 3) an Exemplar Bridging (EB) block to adaptively revise the intermediate ViT representations by using the nearest exemplars. Finally, we complete the gene expression prediction task with a simple attention-based prediction block. Experiments on standard benchmark datasets indicate the superiority of our approach when comparing with the past state-of-the-art (SOTA) methods.

5.7CRMay 6
Assessing Generalisation Capability of Machine Learning Models for Intrusion Detection

Md Zakir Hossain, Md Ayshik Rahman Khan, Md Rafiqul Islam et al.

The growth of networked and IoT systems has intensified cyber-security threats and exposed the limits of traditional signature-based intrusion detection. Although machine-learning-based intrusion detection systems often report strong benchmark performance, high ac- curacy within a single dataset does not necessarily guarantee reliable performance in unseen network environments. This study investigates the generalisation capability of supervised machine learning models for intrusion detection using UNSW-NB15 and TON_IoT. Random Forest, Logistic Regression, and Naive Bayes were evaluated under same-dataset and cross-dataset settings. Random Forest achieved the strongest same dataset performance, with 95.08% accuracy on UNSW-NB15 and 99.79% on TON_IoT, but performance dropped sharply in cross-dataset testing. When trained on UNSW-NB15 and tested on TON_IoT or vice versa, below 40% accuracy. These results reveal a significant generalisation gap in intrusion detection. We connect this challenge to affective computing and human-centric AI, where behavioural signal analysis, anomaly detection, domain shift, and context-sensitive modelling are also central. This framing highlights the need for adaptive, generalisable cyber-security models that can operate across changing network and IoT environments.

3.6CVMay 18, 2025
SRLoRA: Subspace Recomposition in Low-Rank Adaptation via Importance-Based Fusion and Reinitialization

Haodong Yang, Lei Wang, Md Zakir Hossain

Low-Rank Adaptation (LoRA) is a widely adopted parameter-efficient fine-tuning (PEFT) method that injects two trainable low-rank matrices (A and B) into frozen pretrained models. While efficient, LoRA constrains updates to a fixed low-rank subspace (Delta W = BA), which can limit representational capacity and hinder downstream performance. We introduce Subspace Recomposition in Low-Rank Adaptation (SRLoRA) via importance-based fusion and reinitialization, a novel approach that enhances LoRA's expressiveness without compromising its lightweight structure. SRLoRA assigns importance scores to each LoRA pair (a column of B and the corresponding row of A), and dynamically recomposes the subspace during training. Less important pairs are fused into the frozen backbone, freeing capacity to reinitialize new pairs along unused principal directions derived from the pretrained weight's singular value decomposition. This mechanism enables continual subspace refreshment and richer adaptation over time, without increasing the number of trainable parameters. We evaluate SRLoRA on both language and vision tasks, including the GLUE benchmark and various image classification datasets. SRLoRA consistently achieves faster convergence and improved accuracy over standard LoRA, demonstrating its generality, efficiency, and potential for broader PEFT applications.