Frequency-mixed Single-source Domain Generalization for Medical Image SegmentationHeng Li, Haojin Li, Wei Zhao et al.
The annotation scarcity of medical image segmentation poses challenges in collecting sufficient training data for deep learning models. Specifically, models trained on limited data may not generalize well to other unseen data domains, resulting in a domain shift issue. Consequently, domain generalization (DG) is developed to boost the performance of segmentation models on unseen domains. However, the DG setup requires multiple source domains, which impedes the efficient deployment of segmentation algorithms in clinical scenarios. To address this challenge and improve the segmentation model's generalizability, we propose a novel approach called the Frequency-mixed Single-source Domain Generalization method (FreeSDG). By analyzing the frequency's effect on domain discrepancy, FreeSDG leverages a mixed frequency spectrum to augment the single-source domain. Additionally, self-supervision is constructed in the domain augmentation to learn robust context-aware representations for the segmentation task. Experimental results on five datasets of three modalities demonstrate the effectiveness of the proposed algorithm. FreeSDG outperforms state-of-the-art methods and significantly improves the segmentation model's generalizability. Therefore, FreeSDG provides a promising solution for enhancing the generalization of medical image segmentation models, especially when annotated data is scarce. The code is available at https://github.com/liamheng/Non-IID_Medical_Image_Segmentation.
GARI: Graph Attention for Relative Isomorphism of Arabic Word EmbeddingsMuhammad Asif Ali, Maha Alshmrani, Jianbin Qin et al.
Bilingual Lexical Induction (BLI) is a core challenge in NLP, it relies on the relative isomorphism of individual embedding spaces. Existing attempts aimed at controlling the relative isomorphism of different embedding spaces fail to incorporate the impact of semantically related words in the model training objective. To address this, we propose GARI that combines the distributional training objectives with multiple isomorphism losses guided by the graph attention network. GARI considers the impact of semantical variations of words in order to define the relative isomorphism of the embedding spaces. Experimental evaluation using the Arabic language data set shows that GARI outperforms the existing research by improving the average P@1 by a relative score of up to 40.95% and 76.80% for in-domain and domain mismatch settings respectively. We release the codes for GARI at https://github.com/asif6827/GARI.
GRI: Graph-based Relative Isomorphism of Word Embedding SpacesMuhammad Asif Ali, Yan Hu, Jianbin Qin et al.
Automated construction of bilingual dictionaries using monolingual embedding spaces is a core challenge in machine translation. The end performance of these dictionaries relies upon the geometric similarity of individual spaces, i.e., their degree of isomorphism. Existing attempts aimed at controlling the relative isomorphism of different spaces fail to incorporate the impact of semantically related words in the training objective. To address this, we propose GRI that combines the distributional training objectives with attentive graph convolutions to unanimously consider the impact of semantically similar words required to define/compute the relative isomorphism of multiple spaces. Experimental evaluation shows that GRI outperforms the existing research by improving the average P@1 by a relative score of up to 63.6%. We release the codes for GRI at https://github.com/asif6827/GRI.
2.7CLSep 27, 2024
Suicide Phenotyping from Clinical Notes in Safety-Net Psychiatric Hospital Using Multi-Label Classification with Pre-Trained Language ModelsZehan Li, Yan Hu, Scott Lane et al.
Accurate identification and categorization of suicidal events can yield better suicide precautions, reducing operational burden, and improving care quality in high-acuity psychiatric settings. Pre-trained language models offer promise for identifying suicidality from unstructured clinical narratives. We evaluated the performance of four BERT-based models using two fine-tuning strategies (multiple single-label and single multi-label) for detecting coexisting suicidal events from 500 annotated psychiatric evaluation notes. The notes were labeled for suicidal ideation (SI), suicide attempts (SA), exposure to suicide (ES), and non-suicidal self-injury (NSSI). RoBERTa outperformed other models using multiple single-label classification strategy (acc=0.86, F1=0.78). MentalBERT (acc=0.83, F1=0.74) also exceeded BioClinicalBERT (acc=0.82, F1=0.72) which outperformed BERT (acc=0.80, F1=0.70). RoBERTa fine-tuned with single multi-label classification further improved the model performance (acc=0.88, F1=0.81). The findings highlight that the model optimization, pretraining with domain-relevant data, and the single multi-label classification strategy enhance the model performance of suicide phenotyping. Keywords: EHR-based Phenotyping; Natural Language Processing; Secondary Use of EHR Data; Suicide Classification; BERT-based Model; Psychiatry; Mental Health
Antonym vs Synonym Distinction using InterlaCed Encoder NETworks (ICE-NET)Muhammad Asif Ali, Yan Hu, Jianbin Qin et al.
Antonyms vs synonyms distinction is a core challenge in lexico-semantic analysis and automated lexical resource construction. These pairs share a similar distributional context which makes it harder to distinguish them. Leading research in this regard attempts to capture the properties of the relation pairs, i.e., symmetry, transitivity, and trans-transitivity. However, the inability of existing research to appropriately model the relation-specific properties limits their end performance. In this paper, we propose InterlaCed Encoder NETworks (i.e., ICE-NET) for antonym vs synonym distinction, that aim to capture and model the relation-specific properties of the antonyms and synonyms pairs in order to perform the classification task in a performance-enhanced manner. Experimental evaluation using the benchmark datasets shows that ICE-NET outperforms the existing research by a relative score of upto 1.8% in F1-measure. We release the codes for ICE-NET at https://github.com/asif6827/ICENET.