Minh Tuan Le

Tien Dang, Viet Thanh Duy Nguyen, Minh Tuan Le et al.

Biomedical Knowledge Graphs (BKGs) integrate diverse datasets to elucidate complex relationships within the biomedical field. Effective link prediction on these graphs can uncover valuable connections, such as potential novel drug-disease relations. We introduce a novel multimodal approach that unifies embeddings from specialized Language Models (LMs) with Graph Contrastive Learning (GCL) to enhance intra-entity relationships while employing a Knowledge Graph Embedding (KGE) model to capture inter-entity relationships for effective link prediction. To address limitations in existing BKGs, we present PrimeKG++, an enriched knowledge graph incorporating multimodal data, including biological sequences and textual descriptions for each entity type. By combining semantic and relational information in a unified representation, our approach demonstrates strong generalizability, enabling accurate link predictions even for unseen nodes. Experimental results on PrimeKG++ and the DrugBank drug-target interaction dataset demonstrate the effectiveness and robustness of our method across diverse biomedical datasets. Our source code, pre-trained models, and data are publicly available at https://github.com/HySonLab/BioMedKG

Tuan Truong, Chau Nguyen, Huy Nguyen et al.

Low-rank Adaptation (LoRA) has emerged as a powerful method for fine-tuning large-scale foundation models. Despite its popularity, the theoretical understanding of LoRA has remained limited. This paper presents a theoretical analysis of LoRA by examining its connection to the Mixture of Experts models. Under this framework, we show that simple reparameterizations of the LoRA matrices can notably accelerate the low-rank matrix estimation process. In particular, we prove that reparameterization can reduce the data needed to achieve a desired estimation error from an exponential to a polynomial scale. Motivated by this insight, we propose Reparameterized Low-Rank Adaptation (RepLoRA), which incorporates lightweight MLPs to reparameterize the LoRA matrices. Extensive experiments across multiple domains demonstrate that RepLoRA consistently outperforms vanilla LoRA. Notably, with limited data, RepLoRA surpasses LoRA by a margin of up to 40.0% and achieves LoRA's performance with only 30.0% of the training data, highlighting both the theoretical and empirical robustness of our PEFT method.