A Transformer-based Diffusion Probabilistic Model for Heart Rate and Blood Pressure Forecasting in Intensive Care UnitPing Chang, Huayu Li, Stuart F. Quan et al.
Background and Objective: Vital sign monitoring in the Intensive Care Unit (ICU) is crucial for enabling prompt interventions for patients. This underscores the need for an accurate predictive system. Therefore, this study proposes a novel deep learning approach for forecasting Heart Rate (HR), Systolic Blood Pressure (SBP), and Diastolic Blood Pressure (DBP) in the ICU. Methods: We extracted $24,886$ ICU stays from the MIMIC-III database which contains data from over $46$ thousand patients, to train and test the model. The model proposed in this study, Transformer-based Diffusion Probabilistic Model for Sparse Time Series Forecasting (TDSTF), merges Transformer and diffusion models to forecast vital signs. The TDSTF model showed state-of-the-art performance in predicting vital signs in the ICU, outperforming other models' ability to predict distributions of vital signs and being more computationally efficient. The code is available at https://github.com/PingChang818/TDSTF. Results: The results of the study showed that TDSTF achieved a Standardized Average Continuous Ranked Probability Score (SACRPS) of $0.4438$ and a Mean Squared Error (MSE) of $0.4168$, an improvement of $18.9\%$ and $34.3\%$ over the best baseline model, respectively. The inference speed of TDSTF is more than $17$ times faster than the best baseline model. Conclusion: TDSTF is an effective and efficient solution for forecasting vital signs in the ICU, and it shows a significant improvement compared to other models in the field.
11.7CVMar 7, 2022Code
Deep Learning Serves Traffic Safety Analysis: A Forward-looking ReviewAbolfazl Razi, Xiwen Chen, Huayu Li et al.
This paper explores Deep Learning (DL) methods that are used or have the potential to be used for traffic video analysis, emphasizing driving safety for both Autonomous Vehicles (AVs) and human-operated vehicles. We present a typical processing pipeline, which can be used to understand and interpret traffic videos by extracting operational safety metrics and providing general hints and guidelines to improve traffic safety. This processing framework includes several steps, including video enhancement, video stabilization, semantic and incident segmentation, object detection and classification, trajectory extraction, speed estimation, event analysis, modeling and anomaly detection. Our main goal is to guide traffic analysts to develop their own custom-built processing frameworks by selecting the best choices for each step and offering new designs for the lacking modules by providing a comparative analysis of the most successful conventional and DL-based algorithms proposed for each step. We also review existing open-source tools and public datasets that can help train DL models. To be more specific, we review exemplary traffic problems and mentioned requires steps for each problem. Besides, we investigate connections to the closely related research areas of drivers' cognition evaluation, Crowd-sourcing-based monitoring systems, Edge Computing in roadside infrastructures, Automated Driving Systems (ADS)-equipped vehicles, and highlight the missing gaps. Finally, we review commercial implementations of traffic monitoring systems, their future outlook, and open problems and remaining challenges for widespread use of such systems.
DeScoD-ECG: Deep Score-Based Diffusion Model for ECG Baseline Wander and Noise RemovalHuayu Li, Gregory Ditzler, Janet Roveda et al.
Objective: Electrocardiogram (ECG) signals commonly suffer noise interference, such as baseline wander. High-quality and high-fidelity reconstruction of the ECG signals is of great significance to diagnosing cardiovascular diseases. Therefore, this paper proposes a novel ECG baseline wander and noise removal technology. Methods: We extended the diffusion model in a conditional manner that was specific to the ECG signals, namely the Deep Score-Based Diffusion model for Electrocardiogram baseline wander and noise removal (DeScoD-ECG). Moreover, we deployed a multi-shots averaging strategy that improved signal reconstructions. We conducted the experiments on the QT Database and the MIT-BIH Noise Stress Test Database to verify the feasibility of the proposed method. Baseline methods are adopted for comparison, including traditional digital filter-based and deep learning-based methods. Results: The quantities evaluation results show that the proposed method obtained outstanding performance on four distance-based similarity metrics with at least 20\% overall improvement compared with the best baseline method. Conclusion: This paper demonstrates the state-of-the-art performance of the DeScoD-ECG for ECG baseline wander and noise removal, which has better approximations of the true data distribution and higher stability under extreme noise corruptions. Significance: This study is one of the first to extend the conditional diffusion-based generative model for ECG noise removal, and the DeScoD-ECG has the potential to be widely used in biomedical applications.
5.2CVJan 11, 2024
Enhancing Digital Hologram Reconstruction Using Reverse-Attention Loss for Untrained Physics-Driven Deep Learning Models with Uncertain DistanceXiwen Chen, Hao Wang, Zhao Zhang et al.
Untrained Physics-based Deep Learning (DL) methods for digital holography have gained significant attention due to their benefits, such as not requiring an annotated training dataset, and providing interpretability since utilizing the governing laws of hologram formation. However, they are sensitive to the hard-to-obtain precise object distance from the imaging plane, posing the $\textit{Autofocusing}$ challenge. Conventional solutions involve reconstructing image stacks for different potential distances and applying focus metrics to select the best results, which apparently is computationally inefficient. In contrast, recently developed DL-based methods treat it as a supervised task, which again needs annotated data and lacks generalizability. To address this issue, we propose $\textit{reverse-attention loss}$, a weighted sum of losses for all possible candidates with learnable weights. This is a pioneering approach to addressing the Autofocusing challenge in untrained deep-learning methods. Both theoretical analysis and experiments demonstrate its superiority in efficiency and accuracy. Interestingly, our method presents a significant reconstruction performance over rival methods (i.e. alternating descent-like optimization, non-weighted loss integration, and random distance assignment) and even is almost equal to that achieved with a precisely known object distance. For example, the difference is less than 1dB in PSNR and 0.002 in SSIM for the target sample in our experiment.
25.3DCApr 12, 2021
Software-Hardware Co-design for Fast and Scalable Training of Deep Learning Recommendation ModelsDheevatsa Mudigere, Yuchen Hao, Jianyu Huang et al.
Deep learning recommendation models (DLRMs) are used across many business-critical services at Facebook and are the single largest AI application in terms of infrastructure demand in its data-centers. In this paper we discuss the SW/HW co-designed solution for high-performance distributed training of large-scale DLRMs. We introduce a high-performance scalable software stack based on PyTorch and pair it with the new evolution of Zion platform, namely ZionEX. We demonstrate the capability to train very large DLRMs with up to 12 Trillion parameters and show that we can attain 40X speedup in terms of time to solution over previous systems. We achieve this by (i) designing the ZionEX platform with dedicated scale-out network, provisioned with high bandwidth, optimal topology and efficient transport (ii) implementing an optimized PyTorch-based training stack supporting both model and data parallelism (iii) developing sharding algorithms capable of hierarchical partitioning of the embedding tables along row, column dimensions and load balancing them across multiple workers; (iv) adding high-performance core operators while retaining flexibility to support optimizers with fully deterministic updates (v) leveraging reduced precision communications, multi-level memory hierarchy (HBM+DDR+SSD) and pipelining. Furthermore, we develop and briefly comment on distributed data ingestion and other supporting services that are required for the robust and efficient end-to-end training in production environments.
5.2IVDec 23, 2020
Towards Boosting the Channel Attention in Real Image Denoising : Sub-band Pyramid AttentionHuayu Li, Haiyu Wu, Xiwen Chen et al.
Convolutional layers in Artificial Neural Networks (ANN) treat the channel features equally without feature selection flexibility. While using ANNs for image denoising in real-world applications with unknown noise distributions, particularly structured noise with learnable patterns, modeling informative features can substantially boost the performance. Channel attention methods in real image denoising tasks exploit dependencies between the feature channels, hence being a frequency component filtering mechanism. Existing channel attention modules typically use global statics as descriptors to learn the inter-channel correlations. This method deems inefficient at learning representative coefficients for re-scaling the channels in frequency level. This paper proposes a novel Sub-band Pyramid Attention (SPA) based on wavelet sub-band pyramid to recalibrate the frequency components of the extracted features in a more fine-grained fashion. We equip the SPA blocks on a network designed for real image denoising. Experimental results show that the proposed method achieves a remarkable improvement than the benchmark naive channel attention block. Furthermore, our results show how the pyramid level affects the performance of the SPA blocks and exhibits favorable generalization capability for the SPA blocks.
8.7IVApr 25, 2020
Deep DIH : Statistically Inferred Reconstruction of Digital In-Line Holography by Deep LearningHuayu Li, Xiwen Chen, Haiyu Wu et al.
Digital in-line holography is commonly used to reconstruct 3D images from 2D holograms for microscopic objects. One of the technical challenges that arise in the signal processing stage is removing the twin image that is caused by the phase-conjugate wavefront from the recorded holograms. Twin image removal is typically formulated as a non-linear inverse problem due to the irreversible scattering process when generating the hologram. Recently, end-to-end deep learning-based methods have been utilized to reconstruct the object wavefront (as a surrogate for the 3D structure of the object) directly from a single-shot in-line digital hologram. However, massive data pairs are required to train deep learning models for acceptable reconstruction precision. In contrast to typical image processing problems, well-curated datasets for in-line digital holography does not exist. Also, the trained model highly influenced by the morphological properties of the object and hence can vary for different applications. Therefore, data collection can be prohibitively cumbersome in practice as a major hindrance to using deep learning for digital holography. In this paper, we proposed a novel implementation of autoencoder-based deep learning architecture for single-shot hologram reconstruction solely based on the current sample without the need for massive datasets to train the model. The simulations results demonstrate the superior performance of the proposed method compared to the state of the art single-shot compressive digital in-line hologram reconstruction method.
6.6LGJan 6, 2019
Channel Locality Block: A Variant of Squeeze-and-ExcitationHuayu Li
Attention mechanism is a hot spot in deep learning field. Using channel attention model is an effective method for improving the performance of the convolutional neural network. Squeeze-and-Excitation block takes advantage of the channel dependence, selectively emphasizing the important channels and compressing the relatively useless channel. In this paper, we proposed a variant of SE block based on channel locality. Instead of using full connection layers to explore the global channel dependence, we adopt convolutional layers to learn the correlation between the nearby channels. We term this new algorithm Channel Locality(C-Local) block. We evaluate SE block and C-Local block by applying them to different CNNs architectures on cifar-10 dataset. We observed that our C-Local block got higher accuracy than SE block did.