Cory Shain

Cory Shain, William Schuler

Scientists often use observational time series data to study complex natural processes, but regression analyses often assume simplistic dynamics. Recent advances in deep learning have yielded startling improvements to the performance of models of complex processes, but deep learning is generally not used for scientific analysis. Here we show that deep learning can be used to analyze complex processes, providing flexible function approximation while preserving interpretability. Our approach relaxes standard simplifying assumptions (e.g., linearity, stationarity, and homoscedasticity) that are implausible for many natural systems and may critically affect the interpretation of data. We evaluate our model on incremental human language processing, a domain with complex continuous dynamics. We demonstrate substantial improvements on behavioral and neuroimaging data, and we show that our model enables discovery of novel patterns in exploratory analyses, controls for diverse confounds in confirmatory analyses, and opens up research questions that are otherwise hard to study.

Kamya Hari, Taha Binhuraib, Jin Li et al.

Encoding models provide a powerful framework for linking continuous stimulus features to neural activity; however, traditional voxelwise approaches are limited by measurement noise, inter-subject variability, and redundancy arising from spatially correlated voxels encoding overlapping neural signals. Here, we propose an independent component (IC)-based encoding framework that dissociates stimulus-driven and noise-driven signals in fMRI data. We decompose continuous fMRI data from naturalistic story listening into ICs using one subset of the data, and train encoding models on independent data to predict IC time series from large language model representations of linguistic input. Across subjects, a subset of ICs exhibited consistently high predictivity. These ICs were spatially and temporally consistent across subjects and included cognitive networks known to respond during story listening (auditory and language). Auditory component time series were strongly correlated with acoustic stimulus features, highlighting the interpretability of identified component time series. Components identified as noise or motion-related artifacts by ICA-AROMA showed uniformly poor predictive performance, confirming that highly predicted components reflect genuine stimulus-related neural signals rather than confounds. Overall, IC-based encoding models enable analyses at the level of functional networks, accommodating the variability in network locations across individuals and providing interpretable results that are easy to compare across subjects.

Nathan Roll, Jill Kries, Laura Gwilliams et al.

Aphasias, selective language impairments which can arise from brain damage, reveal the functional organization of human language by providing causal links between affected brain regions and specific symptom profiles. Drawing on this literature, we introduce an aphasia-inspired technique to characterize the emergent functional organization of language models (LMs). We ``lesion'' (zero-out) model parameters and measure the effects of this intervention against clinical aphasia symptoms, as diagnosed by the Text Aphasia Battery (TAB). When applied to 112,426 outputs from five 1B-scale LMs, the full range of evaluated symptoms surface, but in distributions largely distinct from those of humans. Our method uncovers broad symptom-profile differences between attention components (query, key, value, output) and feed-forward components (up, gate, down), with weaker evidence for differences among components within the same mechanism. We also find an effect of depth, where lesions in early layers disproportionately cause syntactic and semantic symptoms while late-middle layers yield higher rates of phonological and fluency deficits. Although some LM lesions induce quantitatively more similar profiles to some human aphasia types than others, qualitative differences in symptom patterns between LMs and humans suggest that aphasia syndromes are heavily influenced by the details of learning and processing rather than being a domain-invariant consequence of disrupted language processing.

Joshua Rozner, Cory Shain

Linguistic representation learning in deep neural language models (LMs) has been studied for decades, for both practical and theoretical reasons. However, finding representations in LMs remains an unsolved problem, in part due to a dilemma between enforcing implausible constraints on representations (e.g., linearity; Arora et al. 2024) and trivializing the notion of representation altogether (Sutter et al., 2025). Here we escape this dilemma by reconceptualizing representations not as patterns of activation but as conduits for learning. Our approach is simple: we perturb an LM by fine-tuning it on a single adversarial example and measure how this perturbation ``infects'' other examples. Perturbation makes no geometric assumptions, and unlike other methods, it does not find representations where it should not (e.g., in untrained LMs). But in trained LMs, perturbation reveals structured transfer at multiple linguistic grain sizes, suggesting that LMs both generalize along representational lines and acquire linguistic abstractions from experience alone.

Joshua Rozner, Leonie Weissweiler, Kyle Mahowald et al.

Construction grammar posits that constructions, or form-meaning pairings, are acquired through experience with language (the distributional learning hypothesis). But how much information about constructions does this distribution actually contain? Corpus-based analyses provide some answers, but text alone cannot answer counterfactual questions about what \emph{caused} a particular word to occur. This requires computable models of the distribution over strings -- namely, pretrained language models (PLMs). Here, we treat a RoBERTa model as a proxy for this distribution and hypothesize that constructions will be revealed within it as patterns of statistical affinity. We support this hypothesis experimentally: many constructions are robustly distinguished, including (i) hard cases where semantically distinct constructions are superficially similar, as well as (ii) \emph{schematic} constructions, whose ``slots'' can be filled by abstract word classes. Despite this success, we also provide qualitative evidence that statistical affinity alone may be insufficient to identify all constructions from text. Thus, statistical affinity is likely an important, but partial, signal available to learners.

Joshua Rozner, Leonie Weissweiler, Cory Shain

Construction grammar posits that language learners acquire constructions (form-meaning pairings) from the statistics of their environment. Recent work supports this hypothesis by showing sensitivity to constructions in pretrained language models (PLMs), including one recent study (Rozner et al., 2025) demonstrating that constructions shape RoBERTa's output distribution. However, models under study have generally been trained on developmentally implausible amounts of data, casting doubt on their relevance to human language learning. Here we use Rozner et al.'s methods to evaluate construction learning in masked language models from the 2024 BabyLM Challenge. Our results show that even when trained on developmentally plausible quantities of data, models learn diverse constructions, even hard cases that are superficially indistinguishable. We further find correlational evidence that constructional performance may be functionally relevant: models that better represent construction perform better on the BabyLM benchmarks.

Yuhan Zhang, Erxiao Wang, Cory Shain

Like visual processing, language processing is susceptible to illusions in which people systematically misperceive stimuli. In one such case--the comparative illusion (CI), e.g., More students have been to Russia than I have--comprehenders tend to judge the sentence as acceptable despite its underlying nonsensical comparison. Prior research has argued that this phenomenon can be explained as Bayesian inference over a noisy channel: the posterior probability of an interpretation of a sentence is proportional to both the prior probability of that interpretation and the likelihood of corruption into the observed (CI) sentence. Initial behavioral work has supported this claim by evaluating a narrow set of alternative interpretations of CI sentences and showing that comprehenders favor interpretations that are more likely to have been corrupted into the illusory sentence. In this study, we replicate and go substantially beyond this earlier work by directly predicting the strength of illusion with a quantitative model of the posterior probability of plausible interpretations, which we derive through a novel synthesis of statistical language models with human behavioral data. Our model explains not only the fine gradations in the strength of CI effects, but also a previously unexplained effect caused by pronominal vs. full noun phrase than-clause subjects. These findings support a noisy-channel theory of sentence comprehension by demonstrating that the theory makes novel predictions about the comparative illusion that bear out empirically. This outcome joins related evidence of noisy channel processing in both illusory and non-illusory contexts to support noisy channel inference as a unified computational-level theory of diverse language processing phenomena.

Nathan Roll, Jill Kries, Flora Jin et al.

Large language models (LLMs) have emerged as a candidate "model organism" for human language, offering an unprecedented opportunity to study the computational basis of linguistic disorders like aphasia. However, traditional clinical assessments are ill-suited for LLMs, as they presuppose human-like pragmatic pressures and probe cognitive processes not inherent to artificial architectures. We introduce the Text Aphasia Battery (TAB), a text-only benchmark adapted from the Quick Aphasia Battery (QAB) to assess aphasic-like deficits in LLMs. The TAB comprises four subtests: Connected Text, Word Comprehension, Sentence Comprehension, and Repetition. This paper details the TAB's design, subtests, and scoring criteria. To facilitate large-scale use, we validate an automated evaluation protocol using Gemini 2.5 Flash, which achieves reliability comparable to expert human raters (prevalence-weighted Cohen's kappa = 0.255 for model--consensus agreement vs. 0.286 for human--human agreement). We release TAB as a clinically-grounded, scalable framework for analyzing language deficits in artificial systems.