Geng Chen

Chen Geng, Sida Peng, Zhen Xu et al. · stanford

This paper addresses the challenge of quickly reconstructing free-viewpoint videos of dynamic humans from sparse multi-view videos. Some recent works represent the dynamic human as a canonical neural radiance field (NeRF) and a motion field, which are learned from videos through differentiable rendering. But the per-scene optimization generally requires hours. Other generalizable NeRF models leverage learned prior from datasets and reduce the optimization time by only finetuning on new scenes at the cost of visual fidelity. In this paper, we propose a novel method for learning neural volumetric videos of dynamic humans from sparse view videos in minutes with competitive visual quality. Specifically, we define a novel part-based voxelized human representation to better distribute the representational power of the network to different human parts. Furthermore, we propose a novel 2D motion parameterization scheme to increase the convergence rate of deformation field learning. Experiments demonstrate that our model can be learned 100 times faster than prior per-scene optimization methods while being competitive in the rendering quality. Training our model on a $512 \times 512$ video with 100 frames typically takes about 5 minutes on a single RTX 3090 GPU. The code will be released on our project page: https://zju3dv.github.io/instant_nvr

Zhen Xu, Sida Peng, Chen Geng et al. · stanford

This paper tackles the challenge of creating relightable and animatable neural avatars from sparse-view (or even monocular) videos of dynamic humans under unknown illumination. Compared to studio environments, this setting is more practical and accessible but poses an extremely challenging ill-posed problem. Previous neural human reconstruction methods are able to reconstruct animatable avatars from sparse views using deformed Signed Distance Fields (SDF) but cannot recover material parameters for relighting. While differentiable inverse rendering-based methods have succeeded in material recovery of static objects, it is not straightforward to extend them to dynamic humans as it is computationally intensive to compute pixel-surface intersection and light visibility on deformed SDFs for inverse rendering. To solve this challenge, we propose a Hierarchical Distance Query (HDQ) algorithm to approximate the world space distances under arbitrary human poses. Specifically, we estimate coarse distances based on a parametric human model and compute fine distances by exploiting the local deformation invariance of SDF. Based on the HDQ algorithm, we leverage sphere tracing to efficiently estimate the surface intersection and light visibility. This allows us to develop the first system to recover animatable and relightable neural avatars from sparse view (or monocular) inputs. Experiments demonstrate that our approach is able to produce superior results compared to state-of-the-art methods. Our code will be released for reproducibility.

Geng Chen, Si-Jie Liu, Yu-Jia Sun et al.

Camouflaged object detection (COD) aims to identify the objects that conceal themselves in natural scenes. Accurate COD suffers from a number of challenges associated with low boundary contrast and the large variation of object appearances, e.g., object size and shape. To address these challenges, we propose a novel Context-aware Cross-level Fusion Network (C2F-Net), which fuses context-aware cross-level features for accurately identifying camouflaged objects. Specifically, we compute informative attention coefficients from multi-level features with our Attention-induced Cross-level Fusion Module (ACFM), which further integrates the features under the guidance of attention coefficients. We then propose a Dual-branch Global Context Module (DGCM) to refine the fused features for informative feature representations by exploiting rich global context information. Multiple ACFMs and DGCMs are integrated in a cascaded manner for generating a coarse prediction from high-level features. The coarse prediction acts as an attention map to refine the low-level features before passing them to our Camouflage Inference Module (CIM) to generate the final prediction. We perform extensive experiments on three widely used benchmark datasets and compare C2F-Net with state-of-the-art (SOTA) models. The results show that C2F-Net is an effective COD model and outperforms SOTA models remarkably. Further, an evaluation on polyp segmentation datasets demonstrates the promising potentials of our C2F-Net in COD downstream applications. Our code is publicly available at: https://github.com/Ben57882/C2FNet-TSCVT.

Wentao Zhu, Yuan Jin, Gege Ma et al.

The accurate diagnosis on pathological subtypes for lung cancer is of significant importance for the follow-up treatments and prognosis managements. In this paper, we propose self-generating hybrid feature network (SGHF-Net) for accurately classifying lung cancer subtypes on computed tomography (CT) images. Inspired by studies stating that cross-scale associations exist in the image patterns between the same case's CT images and its pathological images, we innovatively developed a pathological feature synthetic module (PFSM), which quantitatively maps cross-modality associations through deep neural networks, to derive the "gold standard" information contained in the corresponding pathological images from CT images. Additionally, we designed a radiological feature extraction module (RFEM) to directly acquire CT image information and integrated it with the pathological priors under an effective feature fusion framework, enabling the entire classification model to generate more indicative and specific pathologically related features and eventually output more accurate predictions. The superiority of the proposed model lies in its ability to self-generate hybrid features that contain multi-modality image information based on a single-modality input. To evaluate the effectiveness, adaptability, and generalization ability of our model, we performed extensive experiments on a large-scale multi-center dataset (i.e., 829 cases from three hospitals) to compare our model and a series of state-of-the-art (SOTA) classification models. The experimental results demonstrated the superiority of our model for lung cancer subtypes classification with significant accuracy improvements in terms of accuracy (ACC), area under the curve (AUC), and F1 score.

Sijun Dong, Yuwei Zhu, Geng Chen et al.

With the widespread application of remote sensing technology in environmental monitoring, the demand for efficient and accurate remote sensing image change detection (CD) for natural environments is growing. We propose a novel deep learning framework named EfficientCD, specifically designed for remote sensing image change detection. The framework employs EfficientNet as its backbone network for feature extraction. To enhance the information exchange between bi-temporal image feature maps, we have designed a new Feature Pyramid Network module targeted at remote sensing change detection, named ChangeFPN. Additionally, to make full use of the multi-level feature maps in the decoding stage, we have developed a layer-by-layer feature upsampling module combined with Euclidean distance to improve feature fusion and reconstruction during the decoding stage. The EfficientCD has been experimentally validated on four remote sensing datasets: LEVIR-CD, SYSU-CD, CLCD, and WHUCD. The experimental results demonstrate that EfficientCD exhibits outstanding performance in change detection accuracy. The code and pretrained models will be released at https://github.com/dyzy41/mmrscd.

Geng Chen, Wendong Zhang, Han Lu et al.

Predictive learning ideally builds the world model of physical processes in one or more given environments. Typical setups assume that we can collect data from all environments at all times. In practice, however, different prediction tasks may arrive sequentially so that the environments may change persistently throughout the training procedure. Can we develop predictive learning algorithms that can deal with more realistic, non-stationary physical environments? In this paper, we study a new continual learning problem in the context of video prediction, and observe that most existing methods suffer from severe catastrophic forgetting in this setup. To tackle this problem, we propose the continual predictive learning (CPL) approach, which learns a mixture world model via predictive experience replay and performs test-time adaptation with non-parametric task inference. We construct two new benchmarks based on RoboNet and KTH, in which different tasks correspond to different physical robotic environments or human actions. Our approach is shown to effectively mitigate forgetting and remarkably outperform the naïve combinations of previous art in video prediction and continual learning.

Shijie Huang, Xukun Zhang, Zhiming Cui et al.

Accurate tissue segmentation of thick-slice fetal brain magnetic resonance (MR) scans is crucial for both reconstruction of isotropic brain MR volumes and the quantification of fetal brain development. However, this task is challenging due to the use of thick-slice scans in clinically-acquired fetal brain data. To address this issue, we propose to leverage high-quality isotropic fetal brain MR volumes (and also their corresponding annotations) as guidance for segmentation of thick-slice scans. Due to existence of significant domain gap between high-quality isotropic volume (i.e., source data) and thick-slice scans (i.e., target data), we employ a domain adaptation technique to achieve the associated knowledge transfer (from high-quality <source> volumes to thick-slice <target> scans). Specifically, we first register the available high-quality isotropic fetal brain MR volumes across different gestational weeks to construct longitudinally-complete source data. To capture domain-invariant information, we then perform Fourier decomposition to extract image content and style codes. Finally, we propose a novel Cycle-Consistent Domain Adaptation Network (C2DA-Net) to efficiently transfer the knowledge learned from high-quality isotropic volumes for accurate tissue segmentation of thick-slice scans. Our C2DA-Net can fully utilize a small set of annotated isotropic volumes to guide tissue segmentation on unannotated thick-slice scans. Extensive experiments on a large-scale dataset of 372 clinically acquired thick-slice MR scans demonstrate that our C2DA-Net achieves much better performance than cutting-edge methods quantitatively and qualitatively.

Yinghui Xing, Dexuan Kong, Shizhou Zhang et al.

Camouflaged object detection (COD), aiming to segment camouflaged objects which exhibit similar patterns with the background, is a challenging task. Most existing works are dedicated to establishing specialized modules to identify camouflaged objects with complete and fine details, while the boundary can not be well located for the lack of object-related semantics. In this paper, we propose a novel ``pre-train, adapt and detect" paradigm to detect camouflaged objects. By introducing a large pre-trained model, abundant knowledge learned from massive multi-modal data can be directly transferred to COD. A lightweight parallel adapter is inserted to adjust the features suitable for the downstream COD task. Extensive experiments on four challenging benchmark datasets demonstrate that our method outperforms existing state-of-the-art COD models by large margins. Moreover, we design a multi-task learning scheme for tuning the adapter to exploit the shareable knowledge across different semantic classes. Comprehensive experimental results showed that the generalization ability of our model can be substantially improved with multi-task adapter initialization on source tasks and multi-task adaptation on target tasks.

Yuan Jin, Gege Ma, Geng Chen et al.

The accurate diagnosis of pathological subtypes of lung cancer is of paramount importance for follow-up treatments and prognosis managements. Assessment methods utilizing deep learning technologies have introduced novel approaches for clinical diagnosis. However, the majority of existing models rely solely on single-modality image input, leading to limited diagnostic accuracy. To this end, we propose a novel deep learning network designed to accurately classify lung cancer subtype with multi-dimensional and multi-modality images, i.e., CT and pathological images. The strength of the proposed model lies in its ability to dynamically process both paired CT-pathological image sets as well as independent CT image sets, and consequently optimize the pathology-related feature extractions from CT images. This adaptive learning approach enhances the flexibility in processing multi-dimensional and multi-modality datasets and results in performance elevating in the model testing phase. We also develop a contrastive constraint module, which quantitatively maps the cross-modality associations through network training, and thereby helps to explore the "gold standard" pathological information from the corresponding CT scans. To evaluate the effectiveness, adaptability, and generalization ability of our model, we conducted extensive experiments on a large-scale multi-center dataset and compared our model with a series of state-of-the-art classification models. The experimental results demonstrated the superiority of our model for lung cancer subtype classification, showcasing significant improvements in accuracy metrics such as ACC, AUC, and F1-score.

Yuxin Xie, Tao Zhou, Yi Zhou et al.

Weakly-supervised medical image segmentation is a challenging task that aims to reduce the annotation cost while keep the segmentation performance. In this paper, we present a novel framework, SimTxtSeg, that leverages simple text cues to generate high-quality pseudo-labels and study the cross-modal fusion in training segmentation models, simultaneously. Our contribution consists of two key components: an effective Textual-to-Visual Cue Converter that produces visual prompts from text prompts on medical images, and a text-guided segmentation model with Text-Vision Hybrid Attention that fuses text and image features. We evaluate our framework on two medical image segmentation tasks: colonic polyp segmentation and MRI brain tumor segmentation, and achieve consistent state-of-the-art performance. Source code is available at: https://github.com/xyx1024/SimTxtSeg.

Tao Zhou, Deng-Ping Fan, Geng Chen et al.

Salient object detection (SOD) on RGB and depth images has attracted more and more research interests, due to its effectiveness and the fact that depth cues can now be conveniently captured. Existing RGB-D SOD models usually adopt different fusion strategies to learn a shared representation from the two modalities (\ie, RGB and depth), while few methods explicitly consider how to preserve modality-specific characteristics. In this study, we propose a novel framework, termed SPNet} (Specificity-preserving network), which benefits SOD performance by exploring both the shared information and modality-specific properties (\eg, specificity). Specifically, we propose to adopt two modality-specific networks and a shared learning network to generate individual and shared saliency prediction maps, respectively. To effectively fuse cross-modal features in the shared learning network, we propose a cross-enhanced integration module (CIM) and then propagate the fused feature to the next layer for integrating cross-level information. Moreover, to capture rich complementary multi-modal information for boosting the SOD performance, we propose a multi-modal feature aggregation (MFA) module to integrate the modality-specific features from each individual decoder into the shared decoder. By using a skip connection, the hierarchical features between the encoder and decoder layers can be fully combined. Extensive experiments demonstrate that our~\ours~outperforms cutting-edge approaches on six popular RGB-D SOD and three camouflaged object detection benchmarks. The project is publicly available at: https://github.com/taozh2017/SPNet.

Yujia Sun, Geng Chen, Tao Zhou et al.

Camouflaged object detection (COD) is a challenging task due to the low boundary contrast between the object and its surroundings. In addition, the appearance of camouflaged objects varies significantly, e.g., object size and shape, aggravating the difficulties of accurate COD. In this paper, we propose a novel Context-aware Cross-level Fusion Network (C2F-Net) to address the challenging COD task. Specifically, we propose an Attention-induced Cross-level Fusion Module (ACFM) to integrate the multi-level features with informative attention coefficients. The fused features are then fed to the proposed Dual-branch Global Context Module (DGCM), which yields multi-scale feature representations for exploiting rich global context information. In C2F-Net, the two modules are conducted on high-level features using a cascaded manner. Extensive experiments on three widely used benchmark datasets demonstrate that our C2F-Net is an effective COD model and outperforms state-of-the-art models remarkably. Our code is publicly available at: https://github.com/thograce/C2FNet.

Yi Zhang, Geng Chen, Qian Chen et al.

We propose a novel Synergistic Attention Network (SA-Net) to address the light field salient object detection by establishing a synergistic effect between multi-modal features with advanced attention mechanisms. Our SA-Net exploits the rich information of focal stacks via 3D convolutional neural networks, decodes the high-level features of multi-modal light field data with two cascaded synergistic attention modules, and predicts the saliency map using an effective feature fusion module in a progressive manner. Extensive experiments on three widely-used benchmark datasets show that our SA-Net outperforms 28 state-of-the-art models, sufficiently demonstrating its effectiveness and superiority. Our code is available at https://github.com/PanoAsh/SA-Net.

Chun-Mei Feng, Zhanyuan Yang, Geng Chen et al.

Magnetic resonance (MR) image acquisition is an inherently prolonged process, whose acceleration by obtaining multiple undersampled images simultaneously through parallel imaging has always been the subject of research. In this paper, we propose the Dual-Octave Convolution (Dual-OctConv), which is capable of learning multi-scale spatial-frequency features from both real and imaginary components, for fast parallel MR image reconstruction. By reformulating the complex operations using octave convolutions, our model shows a strong ability to capture richer representations of MR images, while at the same time greatly reducing the spatial redundancy. More specifically, the input feature maps and convolutional kernels are first split into two components (i.e., real and imaginary), which are then divided into four groups according to their spatial frequencies. Then, our Dual-OctConv conducts intra-group information updating and inter-group information exchange to aggregate the contextual information across different groups. Our framework provides two appealing benefits: (i) it encourages interactions between real and imaginary components at various spatial frequencies to achieve richer representational capacity, and (ii) it enlarges the receptive field by learning multiple spatial-frequency features of both the real and imaginary components. We evaluate the performance of the proposed model on the acceleration of multi-coil MR image reconstruction. Extensive experiments are conducted on an {in vivo} knee dataset under different undersampling patterns and acceleration factors. The experimental results demonstrate the superiority of our model in accelerated parallel MR image reconstruction. Our code is available at: github.com/chunmeifeng/Dual-OctConv.

Chengbo Yuan, Geng Chen, Li Yi et al.

Egocentric videos provide valuable insights into human interactions with the physical world, which has sparked growing interest in the computer vision and robotics communities. A critical challenge in fully understanding the geometry and dynamics of egocentric videos is dense scene reconstruction. However, the lack of high-quality labeled datasets in this field has hindered the effectiveness of current supervised learning methods. In this work, we aim to address this issue by exploring an self-supervised dynamic scene reconstruction approach. We introduce EgoMono4D, a novel model that unifies the estimation of multiple variables necessary for Egocentric Monocular 4D reconstruction, including camera intrinsic, camera poses, and video depth, all within a fast feed-forward framework. Starting from pretrained single-frame depth and intrinsic estimation model, we extend it with camera poses estimation and align multi-frame results on large-scale unlabeled egocentric videos. We evaluate EgoMono4D in both in-domain and zero-shot generalization settings, achieving superior performance in dense pointclouds sequence reconstruction compared to all baselines. EgoMono4D represents the first attempt to apply self-supervised learning for pointclouds sequence reconstruction to the label-scarce egocentric field, enabling fast, dense, and generalizable reconstruction. The interactable visualization, code and trained models are released https://egomono4d.github.io/

Chun-Mei Feng, Yunlu Yan, Geng Chen et al.

Accelerated multi-modal magnetic resonance (MR) imaging is a new and effective solution for fast MR imaging, providing superior performance in restoring the target modality from its undersampled counterpart with guidance from an auxiliary modality. However, existing works simply combine the auxiliary modality as prior information, lacking in-depth investigations on the potential mechanisms for fusing different modalities. Further, they usually rely on the convolutional neural networks (CNNs), which is limited by the intrinsic locality in capturing the long-distance dependency. To this end, we propose a multi-modal transformer (MTrans), which is capable of transferring multi-scale features from the target modality to the auxiliary modality, for accelerated MR imaging. To capture deep multi-modal information, our MTrans utilizes an improved multi-head attention mechanism, named cross attention module, which absorbs features from the auxiliary modality that contribute to the target modality. Our framework provides three appealing benefits: (i) Our MTrans use an improved transformers for multi-modal MR imaging, affording more global information compared with existing CNN-based methods. (ii) A new cross attention module is proposed to exploit the useful information in each modality at different scales. The small patch in the target modality aims to keep more fine details, the large patch in the auxiliary modality aims to obtain high-level context features from the larger region and supplement the target modality effectively. (iii) We evaluate MTrans with various accelerated multi-modal MR imaging tasks, e.g., MR image reconstruction and super-resolution, where MTrans outperforms state-of-the-art methods on fastMRI and real-world clinical datasets.

Ge-Peng Ji, Yu-Cheng Chou, Deng-Ping Fan et al.

Existing video polyp segmentation (VPS) models typically employ convolutional neural networks (CNNs) to extract features. However, due to their limited receptive fields, CNNs can not fully exploit the global temporal and spatial information in successive video frames, resulting in false-positive segmentation results. In this paper, we propose the novel PNS-Net (Progressively Normalized Self-attention Network), which can efficiently learn representations from polyp videos with real-time speed (~140fps) on a single RTX 2080 GPU and no post-processing. Our PNS-Net is based solely on a basic normalized self-attention block, equipping with recurrence and CNNs entirely. Experiments on challenging VPS datasets demonstrate that the proposed PNS-Net achieves state-of-the-art performance. We also conduct extensive experiments to study the effectiveness of the channel split, soft-attention, and progressive learning strategy. We find that our PNS-Net works well under different settings, making it a promising solution to the VPS task.

Hong-Bo Bi, Zi-Qi Liu, Kang Wang et al.

Saliency detection based on the complementary information from RGB images and depth maps has recently gained great popularity. In this paper, we propose Complementary Attention and Adaptive Integration Network (CAAI-Net), a novel RGB-D saliency detection model that integrates complementary attention based feature concentration and adaptive cross-modal feature fusion into a unified framework for accurate saliency detection. Specifically, we propose a context-aware complementary attention (CCA) module, which consists of a feature interaction component, a complementary attention component, and a global-context component. The CCA module first utilizes the feature interaction component to extract rich local context features. The resulting features are then fed into the complementary attention component, which employs the complementary attention generated from adjacent levels to guide the attention at the current layer so that the mutual background disturbances are suppressed and the network focuses more on the areas with salient objects. Finally, we utilize a specially-designed adaptive feature integration (AFI) module, which sufficiently considers the low-quality issue of depth maps, to aggregate the RGB and depth features in an adaptive manner. Extensive experiments on six challenging benchmark datasets demonstrate that CAAI-Net is an effective saliency detection model and outperforms nine state-of-the-art models in terms of four widely-used metrics. In addition, extensive ablation studies confirm the effectiveness of the proposed CCA and AFI modules.

Geng Chen, Xinrui Chen, Bo Dong et al.

Camouflaged object detection (COD), which aims to identify the objects that conceal themselves into the surroundings, has recently drawn increasing research efforts in the field of computer vision. In practice, the success of deep learning based COD is mainly determined by two key factors, including (i) A significantly large receptive field, which provides rich context information, and (ii) An effective fusion strategy, which aggregates the rich multi-level features for accurate COD. Motivated by these observations, in this paper, we propose a novel deep learning based COD approach, which integrates the large receptive field and effective feature fusion into a unified framework. Specifically, we first extract multi-level features from a backbone network. The resulting features are then fed to the proposed dual-branch mixture convolution modules, each of which utilizes multiple asymmetric convolutional layers and two dilated convolutional layers to extract rich context features from a large receptive field. Finally, we fuse the features using specially-designed multilevel interactive fusion modules, each of which employs an attention mechanism along with feature interaction for effective feature fusion. Our method detects camouflaged objects with an effective fusion strategy, which aggregates the rich context information from a large receptive field. All of these designs meet the requirements of COD well, allowing the accurate detection of camouflaged objects. Extensive experiments on widely-used benchmark datasets demonstrate that our method is capable of accurately detecting camouflaged objects and outperforms the state-of-the-art methods.

Geng Chen, Peirong Guo

In recent years, crowd counting, a technique for predicting the number of people in an image, becomes a challenging task in computer vision. In this paper, we propose a cross-column feature fusion network to solve the problem of information redundancy in columns. We introduce the Information Fusion Module (IFM) which provides a channel for information flow to help different columns to obtain significant information from another column. Through this channel, different columns exchange information with each other and extract useful features from the other column to enhance key information. Hence, there is no need for columns to pay attention to all areas in the image. Each column can be responsible for different regions, thereby reducing the burden of each column. In experiments, the generalizability of our model is more robust and the results of transferring between different datasets acheive the comparable results with the state-of-the-art models.

Deng-Ping Fan, Ge-Peng Ji, Tao Zhou et al.

Colonoscopy is an effective technique for detecting colorectal polyps, which are highly related to colorectal cancer. In clinical practice, segmenting polyps from colonoscopy images is of great importance since it provides valuable information for diagnosis and surgery. However, accurate polyp segmentation is a challenging task, for two major reasons: (i) the same type of polyps has a diversity of size, color and texture; and (ii) the boundary between a polyp and its surrounding mucosa is not sharp. To address these challenges, we propose a parallel reverse attention network (PraNet) for accurate polyp segmentation in colonoscopy images. Specifically, we first aggregate the features in high-level layers using a parallel partial decoder (PPD). Based on the combined feature, we then generate a global map as the initial guidance area for the following components. In addition, we mine the boundary cues using a reverse attention (RA) module, which is able to establish the relationship between areas and boundary cues. Thanks to the recurrent cooperation mechanism between areas and boundaries, our PraNet is capable of calibrating any misaligned predictions, improving the segmentation accuracy. Quantitative and qualitative evaluations on five challenging datasets across six metrics show that our PraNet improves the segmentation accuracy significantly, and presents a number of advantages in terms of generalizability, and real-time segmentation efficiency.

Deng-Ping Fan, Tao Zhou, Ge-Peng Ji et al.

Coronavirus Disease 2019 (COVID-19) spread globally in early 2020, causing the world to face an existential health crisis. Automated detection of lung infections from computed tomography (CT) images offers a great potential to augment the traditional healthcare strategy for tackling COVID-19. However, segmenting infected regions from CT slices faces several challenges, including high variation in infection characteristics, and low intensity contrast between infections and normal tissues. Further, collecting a large amount of data is impractical within a short time period, inhibiting the training of a deep model. To address these challenges, a novel COVID-19 Lung Infection Segmentation Deep Network (Inf-Net) is proposed to automatically identify infected regions from chest CT slices. In our Inf-Net, a parallel partial decoder is used to aggregate the high-level features and generate a global map. Then, the implicit reverse attention and explicit edge-attention are utilized to model the boundaries and enhance the representations. Moreover, to alleviate the shortage of labeled data, we present a semi-supervised segmentation framework based on a randomly selected propagation strategy, which only requires a few labeled images and leverages primarily unlabeled data. Our semi-supervised framework can improve the learning ability and achieve a higher performance. Extensive experiments on our COVID-SemiSeg and real CT volumes demonstrate that the proposed Inf-Net outperforms most cutting-edge segmentation models and advances the state-of-the-art performance.

Yoonmi Hong, Wei-Tang Chang, Geng Chen et al.

Diffusion MRI (dMRI) is a unique imaging technique for in vivo characterization of tissue microstructure and white matter pathways. However, its relatively long acquisition time implies greater motion artifacts when imaging, for example, infants and Parkinson's disease patients. To accelerate dMRI acquisition, we propose in this paper (i) a diffusion encoding scheme, called Slice-Interleaved Diffusion Encoding (SIDE), that interleaves each diffusion-weighted (DW) image volume with slices that are encoded with different diffusion gradients, essentially allowing the slice-undersampling of image volume associated with each diffusion gradient to significantly reduce acquisition time, and (ii) a method based on deep learning for effective reconstruction of DW images from the highly slice-undersampled data. Evaluation based on the Human Connectome Project (HCP) dataset indicates that our method can achieve a high acceleration factor of up to 6 with minimal information loss. Evaluation using dMRI data acquired with SIDE acquisition demonstrates that it is possible to accelerate the acquisition by as much as 50 folds when combined with multi-band imaging.

Tao Zhou, Huazhu Fu, Geng Chen et al.

Magnetic resonance imaging (MRI) is a widely used neuroimaging technique that can provide images of different contrasts (i.e., modalities). Fusing this multi-modal data has proven particularly effective for boosting model performance in many tasks. However, due to poor data quality and frequent patient dropout, collecting all modalities for every patient remains a challenge. Medical image synthesis has been proposed as an effective solution to this, where any missing modalities are synthesized from the existing ones. In this paper, we propose a novel Hybrid-fusion Network (Hi-Net) for multi-modal MR image synthesis, which learns a mapping from multi-modal source images (i.e., existing modalities) to target images (i.e., missing modalities). In our Hi-Net, a modality-specific network is utilized to learn representations for each individual modality, and a fusion network is employed to learn the common latent representation of multi-modal data. Then, a multi-modal synthesis network is designed to densely combine the latent representation with hierarchical features from each modality, acting as a generator to synthesize the target images. Moreover, a layer-wise multi-modal fusion strategy is presented to effectively exploit the correlations among multiple modalities, in which a Mixed Fusion Block (MFB) is proposed to adaptively weight different fusion strategies (i.e., element-wise summation, product, and maximization). Extensive experiments demonstrate that the proposed model outperforms other state-of-the-art medical image synthesis methods.

Feihong Liu, Jun Feng, Geng Chen et al.

Parcellation of whole-brain tractography streamlines is an important step for tract-based analysis of brain white matter microstructure. Existing fiber parcellation approaches rely on accurate registration between an atlas and the tractograms of an individual, however, due to large individual differences, accurate registration is hard to guarantee in practice. To resolve this issue, we propose a novel deep learning method, called DeepBundle, for registration-free fiber parcellation. Our method utilizes graph convolution neural networks (GCNNs) to predict the parcellation label of each fiber tract. GCNNs are capable of extracting the geometric features of each fiber tract and harnessing the resulting features for accurate fiber parcellation and ultimately avoiding the use of atlases and any registration method. We evaluate DeepBundle using data from the Human Connectome Project. Experimental results demonstrate the advantages of DeepBundle and suggest that the geometric features extracted from each fiber tract can be used to effectively parcellate the fiber tracts.