Yu Shen

Huaijun Jiang, Yu Shen, Yang Li et al. · eth-zurich

Black-box optimization (BBO) has a broad range of applications, including automatic machine learning, experimental design, and database knob tuning. However, users still face challenges when applying BBO methods to their problems at hand with existing software packages in terms of applicability, performance, and efficiency. This paper presents OpenBox, an open-source BBO toolkit with improved usability. It implements user-friendly interfaces and visualization for users to define and manage their tasks. The modular design behind OpenBox facilitates its flexible deployment in existing systems. Experimental results demonstrate the effectiveness and efficiency of OpenBox over existing systems. The source code of OpenBox is available at https://github.com/PKU-DAIR/open-box.

Yang Li, Yu Shen, Wentao Zhang et al. · eth-zurich, microsoft-research

End-to-end AutoML has attracted intensive interests from both academia and industry which automatically searches for ML pipelines in a space induced by feature engineering, algorithm/model selection, and hyper-parameter tuning. Existing AutoML systems, however, suffer from scalability issues when applying to application domains with large, high-dimensional search spaces. We present VolcanoML, a scalable and extensible framework that facilitates systematic exploration of large AutoML search spaces. VolcanoML introduces and implements basic building blocks that decompose a large search space into smaller ones, and allows users to utilize these building blocks to compose an execution plan for the AutoML problem at hand. VolcanoML further supports a Volcano-style execution model -- akin to the one supported by modern database systems -- to execute the plan constructed. Our evaluation demonstrates that, not only does VolcanoML raise the level of expressiveness for search space decomposition in AutoML, it also leads to actual findings of decomposition strategies that are significantly more efficient than the ones employed by state-of-the-art AutoML systems such as auto-sklearn. This paper is the extended version of the initial VolcanoML paper appeared in VLDB 2021.

Yang Li, Yu Shen, Huaijun Jiang et al. · eth-zurich, pku

With the extensive applications of machine learning models, automatic hyperparameter optimization (HPO) has become increasingly important. Motivated by the tuning behaviors of human experts, it is intuitive to leverage auxiliary knowledge from past HPO tasks to accelerate the current HPO task. In this paper, we propose TransBO, a novel two-phase transfer learning framework for HPO, which can deal with the complementary nature among source tasks and dynamics during knowledge aggregation issues simultaneously. This framework extracts and aggregates source and target knowledge jointly and adaptively, where the weights can be learned in a principled manner. The extensive experiments, including static and dynamic transfer learning settings and neural architecture search, demonstrate the superiority of TransBO over the state-of-the-arts.

Yang Li, Yu Shen, Huaijun Jiang et al. · eth-zurich, pku

The tuning of hyperparameters becomes increasingly important as machine learning (ML) models have been extensively applied in data mining applications. Among various approaches, Bayesian optimization (BO) is a successful methodology to tune hyper-parameters automatically. While traditional methods optimize each tuning task in isolation, there has been recent interest in speeding up BO by transferring knowledge across previous tasks. In this work, we introduce an automatic method to design the BO search space with the aid of tuning history from past tasks. This simple yet effective approach can be used to endow many existing BO methods with transfer learning capabilities. In addition, it enjoys the three advantages: universality, generality, and safeness. The extensive experiments show that our approach considerably boosts BO by designing a promising and compact search space instead of using the entire space, and outperforms the state-of-the-arts on a wide range of benchmarks, including machine learning and deep learning tuning tasks, and neural architecture search.

Tianyi Bai, Yang Li, Yu Shen et al. · pku, tencent-ai

A wide spectrum of design and decision problems, including parameter tuning, A/B testing and drug design, intrinsically are instances of black-box optimization. Bayesian optimization (BO) is a powerful tool that models and optimizes such expensive "black-box" functions. However, at the beginning of optimization, vanilla Bayesian optimization methods often suffer from slow convergence issue due to inaccurate modeling based on few trials. To address this issue, researchers in the BO community propose to incorporate the spirit of transfer learning to accelerate optimization process, which could borrow strength from the past tasks (source tasks) to accelerate the current optimization problem (target task). This survey paper first summarizes transfer learning methods for Bayesian optimization from four perspectives: initial points design, search space design, surrogate model, and acquisition function. Then it highlights its methodological aspects and technical details for each approach. Finally, it showcases a wide range of applications and proposes promising future directions.

Wentao Zhang, Zeang Sheng, Mingyu Yang et al. · pku, tencent-ai

Recently, graph neural networks (GNNs) have shown prominent performance in graph representation learning by leveraging knowledge from both graph structure and node features. However, most of them have two major limitations. First, GNNs can learn higher-order structural information by stacking more layers but can not deal with large depth due to the over-smoothing issue. Second, it is not easy to apply these methods on large graphs due to the expensive computation cost and high memory usage. In this paper, we present node-adaptive feature smoothing (NAFS), a simple non-parametric method that constructs node representations without parameter learning. NAFS first extracts the features of each node with its neighbors of different hops by feature smoothing, and then adaptively combines the smoothed features. Besides, the constructed node representation can further be enhanced by the ensemble of smoothed features extracted via different smoothing strategies. We conduct experiments on four benchmark datasets on two different application scenarios: node clustering and link prediction. Remarkably, NAFS with feature ensemble outperforms the state-of-the-art GNNs on these tasks and mitigates the aforementioned two limitations of most learning-based GNN counterparts.

Wentao Zhang, Yu Shen, Zheyu Lin et al.

Graph neural networks (GNNs) have achieved state-of-the-art performance in various graph-based tasks. However, as mainstream GNNs are designed based on the neural message passing mechanism, they do not scale well to data size and message passing steps. Although there has been an emerging interest in the design of scalable GNNs, current researches focus on specific GNN design, rather than the general design space, limiting the discovery of potential scalable GNN models. This paper proposes PasCa, a new paradigm and system that offers a principled approach to systemically construct and explore the design space for scalable GNNs, rather than studying individual designs. Through deconstructing the message passing mechanism, PasCa presents a novel Scalable Graph Neural Architecture Paradigm (SGAP), together with a general architecture design space consisting of 150k different designs. Following the paradigm, we implement an auto-search engine that can automatically search well-performing and scalable GNN architectures to balance the trade-off between multiple criteria (e.g., accuracy and efficiency) via multi-objective optimization. Empirical studies on ten benchmark datasets demonstrate that the representative instances (i.e., PasCa-V1, V2, and V3) discovered by our system achieve consistent performance among competitive baselines. Concretely, PasCa-V3 outperforms the state-of-the-art GNN method JK-Net by 0.4\% in terms of predictive accuracy on our large industry dataset while achieving up to $28.3\times$ training speedups.

Yu Shen, Xinyuyang Ren, Yupeng Lu et al.

Distributed data analytic engines like Spark are common choices to process massive data in industry. However, the performance of Spark SQL highly depends on the choice of configurations, where the optimal ones vary with the executed workloads. Among various alternatives for Spark SQL tuning, Bayesian optimization (BO) is a popular framework that finds near-optimal configurations given sufficient budget, but it suffers from the re-optimization issue and is not practical in real production. When applying transfer learning to accelerate the tuning process, we notice two domain-specific challenges: 1) most previous work focus on transferring tuning history, while expert knowledge from Spark engineers is of great potential to improve the tuning performance but is not well studied so far; 2) history tasks should be carefully utilized, where using dissimilar ones lead to a deteriorated performance in production. In this paper, we present Rover, a deployed online Spark SQL tuning service for efficient and safe search on industrial workloads. To address the challenges, we propose generalized transfer learning to boost the tuning performance based on external knowledge, including expert-assisted Bayesian optimization and controlled history transfer. Experiments on public benchmarks and real-world tasks show the superiority of Rover over competitive baselines. Notably, Rover saves an average of 50.1% of the memory cost on 12k real-world Spark SQL tasks in 20 iterations, among which 76.2% of the tasks achieve a significant memory reduction of over 60%.

Michael Villarreal, Bibek Poudel, Ryan Wickman et al.

With the growing use of machine learning algorithms and ubiquitous sensors, many `perception-to-control' systems are being developed and deployed. To ensure their trustworthiness, improving their robustness through adversarial training is one potential approach. We propose a gradient-free adversarial training technique, named AutoJoin, to effectively and efficiently produce robust models for image-based maneuvering. Compared to other state-of-the-art methods with testing on over 5M images, AutoJoin achieves significant performance increases up to the 40% range against perturbations while improving on clean performance up to 300%. AutoJoin is also highly efficient, saving up to 86% time per training epoch and 90% training data over other state-of-the-art techniques. The core idea of AutoJoin is to use a decoder attachment to the original regression model creating a denoising autoencoder within the architecture. This architecture allows the tasks `maneuvering' and `denoising sensor input' to be jointly learnt and reinforce each other's performance.

Wentao Zhang, Zheyu Lin, Yu Shen et al.

Graph neural networks (GNNs) have been intensively applied to various graph-based applications. Despite their success, manually designing the well-behaved GNNs requires immense human expertise. And thus it is inefficient to discover the potentially optimal data-specific GNN architecture. This paper proposes DFG-NAS, a new neural architecture search (NAS) method that enables the automatic search of very deep and flexible GNN architectures. Unlike most existing methods that focus on micro-architectures, DFG-NAS highlights another level of design: the search for macro-architectures on how atomic propagation (\textbf{\texttt{P}}) and transformation (\textbf{\texttt{T}}) operations are integrated and organized into a GNN. To this end, DFG-NAS proposes a novel search space for \textbf{\texttt{P-T}} permutations and combinations based on message-passing dis-aggregation, defines four custom-designed macro-architecture mutations, and employs the evolutionary algorithm to conduct an efficient and effective search. Empirical studies on four node classification tasks demonstrate that DFG-NAS outperforms state-of-the-art manual designs and NAS methods of GNNs.

Yu Shen, Yupeng Lu, Yang Li et al.

The Combined Algorithm Selection and Hyperparameters optimization (CASH) problem is one of the fundamental problems in Automated Machine Learning (AutoML). Motivated by the success of ensemble learning, recent AutoML systems build post-hoc ensembles to output the final predictions instead of using the best single learner. However, while most CASH methods focus on searching for a single learner with the best performance, they neglect the diversity among base learners (i.e., they may suggest similar configurations to previously evaluated ones), which is also a crucial consideration when building an ensemble. To tackle this issue and further enhance the ensemble performance, we propose DivBO, a diversity-aware framework to inject explicit search of diversity into the CASH problems. In the framework, we propose to use a diversity surrogate to predict the pair-wise diversity of two unseen configurations. Furthermore, we introduce a temporary pool and a weighted acquisition function to guide the search of both performance and diversity based on Bayesian optimization. Empirical results on 15 public datasets show that DivBO achieves the best average ranks (1.82 and 1.73) on both validation and test errors among 10 compared methods, including post-hoc designs in recent AutoML systems and state-of-the-art baselines for ensemble learning on CASH problems.

Huaijun Jiang, Yu Shen, Yang Li

In this paper, we describe our method for tackling the automated hyperparameter optimization challenge in QQ Browser 2021 AI Algorithm Competiton (ACM CIKM 2021 AnalyticCup Track 2). The competition organizers provide anonymized realistic industrial tasks and datasets for black-box optimization. Based on our open-sourced package OpenBox, we adopt the Bayesian optimization framework for configuration sampling and a heuristic early stopping strategy. We won first place in both the preliminary and final contests with the results of 0.938291 and 0.918753, respectively.

Yang Li, Yu Shen, Huaijun Jiang et al.

The ever-growing demand and complexity of machine learning are putting pressure on hyper-parameter tuning systems: while the evaluation cost of models continues to increase, the scalability of state-of-the-arts starts to become a crucial bottleneck. In this paper, inspired by our experience when deploying hyper-parameter tuning in a real-world application in production and the limitations of existing systems, we propose Hyper-Tune, an efficient and robust distributed hyper-parameter tuning framework. Compared with existing systems, Hyper-Tune highlights multiple system optimizations, including (1) automatic resource allocation, (2) asynchronous scheduling, and (3) multi-fidelity optimizer. We conduct extensive evaluations on benchmark datasets and a large-scale real-world dataset in production. Empirically, with the aid of these optimizations, Hyper-Tune outperforms competitive hyper-parameter tuning systems on a wide range of scenarios, including XGBoost, CNN, RNN, and some architectural hyper-parameters for neural networks. Compared with the state-of-the-art BOHB and A-BOHB, Hyper-Tune achieves up to 11.2x and 5.1x speedups, respectively.

Yu Shen, Yang Li, Jian Zheng et al.

Designing neural architectures requires immense manual efforts. This has promoted the development of neural architecture search (NAS) to automate the design. While previous NAS methods achieve promising results but run slowly, zero-cost proxies run extremely fast but are less promising. Therefore, it is of great potential to accelerate NAS via those zero-cost proxies. The existing method has two limitations, which are unforeseeable reliability and one-shot usage. To address the limitations, we present ProxyBO, an efficient Bayesian optimization (BO) framework that utilizes the zero-cost proxies to accelerate neural architecture search. We apply the generalization ability measurement to estimate the fitness of proxies on the task during each iteration and design a novel acquisition function to combine BO with zero-cost proxies based on their dynamic influence. Extensive empirical studies show that ProxyBO consistently outperforms competitive baselines on five tasks from three public benchmarks. Concretely, ProxyBO achieves up to 5.41x and 3.86x speedups over the state-of-the-art approaches REA and BRP-NAS.

Wentao Zhang, Yuezihan Jiang, Yang Li et al.

Graph neural networks (GNNs) have been widely used in many graph-based tasks such as node classification, link prediction, and node clustering. However, GNNs gain their performance benefits mainly from performing the feature propagation and smoothing across the edges of the graph, thus requiring sufficient connectivity and label information for effective propagation. Unfortunately, many real-world networks are sparse in terms of both edges and labels, leading to sub-optimal performance of GNNs. Recent interest in this sparse problem has focused on the self-training approach, which expands supervised signals with pseudo labels. Nevertheless, the self-training approach inherently cannot realize the full potential of refining the learning performance on sparse graphs due to the unsatisfactory quality and quantity of pseudo labels. In this paper, we propose ROD, a novel reception-aware online knowledge distillation approach for sparse graph learning. We design three supervision signals for ROD: multi-scale reception-aware graph knowledge, task-based supervision, and rich distilled knowledge, allowing online knowledge transfer in a peer-teaching manner. To extract knowledge concealed in the multi-scale reception fields, ROD explicitly requires individual student models to preserve different levels of locality information. For a given task, each student would predict based on its reception-scale knowledge, while simultaneously a strong teacher is established on-the-fly by combining multi-scale knowledge. Our approach has been extensively evaluated on 9 datasets and a variety of graph-based tasks, including node classification, link prediction, and node clustering. The result demonstrates that ROD achieves state-of-art performance and is more robust for the graph sparsity.

Wentao Zhang, Yu Shen, Zheyu Lin et al.

In recent studies, neural message passing has proved to be an effective way to design graph neural networks (GNNs), which have achieved state-of-the-art performance in many graph-based tasks. However, current neural-message passing architectures typically need to perform an expensive recursive neighborhood expansion in multiple rounds and consequently suffer from a scalability issue. Moreover, most existing neural-message passing schemes are inflexible since they are restricted to fixed-hop neighborhoods and insensitive to the actual demands of different nodes. We circumvent these limitations by a novel feature-message passing framework, called Graph Multi-layer Perceptron (GMLP), which separates the neural update from the message passing. With such separation, GMLP significantly improves the scalability and efficiency by performing the message passing procedure in a pre-compute manner, and is flexible and adaptive in leveraging node feature messages over various levels of localities. We further derive novel variants of scalable GNNs under this framework to achieve the best of both worlds in terms of performance and efficiency. We conduct extensive evaluations on 11 benchmark datasets, including large-scale datasets like ogbn-products and an industrial dataset, demonstrating that GMLP achieves not only the state-of-art performance, but also high training scalability and efficiency.

Yang Li, Yu Shen, Jiawei Jiang et al.

Hyperparameter optimization (HPO) is a fundamental problem in automatic machine learning (AutoML). However, due to the expensive evaluation cost of models (e.g., training deep learning models or training models on large datasets), vanilla Bayesian optimization (BO) is typically computationally infeasible. To alleviate this issue, Hyperband (HB) utilizes the early stopping mechanism to speed up configuration evaluations by terminating those badly-performing configurations in advance. This leads to two kinds of quality measurements: (1) many low-fidelity measurements for configurations that get early-stopped, and (2) few high-fidelity measurements for configurations that are evaluated without being early stopped. The state-of-the-art HB-style method, BOHB, aims to combine the benefits of both BO and HB. Instead of sampling configurations randomly in HB, BOHB samples configurations based on a BO surrogate model, which is constructed with the high-fidelity measurements only. However, the scarcity of high-fidelity measurements greatly hampers the efficiency of BO to guide the configuration search. In this paper, we present MFES-HB, an efficient Hyperband method that is capable of utilizing both the high-fidelity and low-fidelity measurements to accelerate the convergence of HPO tasks. Designing MFES-HB is not trivial as the low-fidelity measurements can be biased yet informative to guide the configuration search. Thus we propose to build a Multi- Fidelity Ensemble Surrogate (MFES) based on the generalized Product of Experts framework, which can integrate useful information from multi-fidelity measurements effectively. The empirical studies on the real-world AutoML tasks demonstrate that MFES-HB can achieve 3.3-8.9x speedups over the state-of-the-art approach - BOHB.