Elton Soares

Guilherme Lima, João M. B. Rodrigues, Marcelo Machado et al.

We present a Wikidata-based framework, called KIF, for virtually integrating heterogeneous knowledge sources. KIF is written in Python and is released as open-source. It leverages Wikidata's data model and vocabulary plus user-defined mappings to construct a unified view of the underlying sources while keeping track of the context and provenance of their statements. The underlying sources can be triplestores, relational databases, CSV files, etc., which may or may not use the vocabulary and RDF encoding of Wikidata. The end result is a virtual knowledge base which behaves like an "extended Wikidata" and which can be queried using a simple but expressive pattern language, defined in terms of Wikidata's data model. In this paper, we present the design and implementation of KIF, discuss how we have used it to solve a real integration problem in the domain of chemistry (involving Wikidata, PubChem, and IBM CIRCA), and present experimental results on the performance and overhead of KIF

Elton F. de S. Soares, Carlos Alberto V. Campos

Image-based depth estimation has gained significant attention in recent research on computer vision for autonomous vehicles in intelligent transportation systems. This focus stems from its cost-effectiveness and wide range of potential applications. Unlike binocular depth estimation methods that require two fixed cameras, monocular depth estimation methods only rely on a single camera, making them highly versatile. While state-of-the-art approaches for this task leverage self-supervised learning of deep neural networks in conjunction with tasks like pose estimation and semantic segmentation, none of them have explored the combination of federated learning and self-supervision to train models using unlabeled and private data captured by autonomous vehicles. The utilization of federated learning offers notable benefits, including enhanced privacy protection, reduced network consumption, and improved resilience to connectivity issues. To address this gap, we propose FedSCDepth, a novel method that combines federated learning and deep self-supervision to enable the learning of monocular depth estimators with comparable effectiveness and superior efficiency compared to the current state-of-the-art methods. Our evaluation experiments conducted on Eigen's Split of the KITTI dataset demonstrate that our proposed method achieves near state-of-the-art performance, with a test loss below 0.13 and requiring, on average, only 1.5k training steps and up to 0.415 GB of weight data transfer per autonomous vehicle on each round.

Maximillien de Bayser, Vinicius Segura, Leonardo Guerreiro Azevedo et al.

There is a gap in scientific information systems development concerning modern software engineering and scientific computing. Historically, software engineering methodologies have been perceived as an unwanted accidental complexity to computational scientists in their scientific systems development. More recent trends, like the end of Moore's law and the subsequent diversification of hardware platforms, combined with the increasing multidisciplinarity of science itself have exacerbated the problem because self-taught "end user developers" are not familiar with the disciplines needed to tackle this increased complexity. On a more positive note, agile programming methods have approached software development practices to the way scientific software is produced. In this work, we present the experience of a multi-year industry research project where agile methods, microservices and DevOps were applied. Our goal is to validate the hypothesis that the use of microservices would allow computational scientists to work in the more minimalistic prototype-oriented way that they prefer while the software engineering team would handle the integration. Hence, scientific multidisciplinary systems would gain in a twofold way: (i) Subject Matter Experts(SME) use their preferable tools to develop the specific scientific part of the system; (ii) software engineers provide the high quality software code for the system delivery.

Renan Souza, Leonardo G. Azevedo, Vítor Lourenço et al.

Machine Learning (ML) has already fundamentally changed several businesses. More recently, it has also been profoundly impacting the computational science and engineering domains, like geoscience, climate science, and health science. In these domains, users need to perform comprehensive data analyses combining scientific data and ML models to provide for critical requirements, such as reproducibility, model explainability, and experiment data understanding. However, scientific ML is multidisciplinary, heterogeneous, and affected by the physical constraints of the domain, making such analyses even more challenging. In this work, we leverage workflow provenance techniques to build a holistic view to support the lifecycle of scientific ML. We contribute with (i) characterization of the lifecycle and taxonomy for data analyses; (ii) design principles to build this view, with a W3C PROV compliant data representation and a reference system architecture; and (iii) lessons learned after an evaluation in an Oil & Gas case using an HPC cluster with 393 nodes and 946 GPUs. The experiments show that the principles enable queries that integrate domain semantics with ML models while keeping low overhead (<1%), high scalability, and an order of magnitude of query acceleration under certain workloads against without our representation.

Renan Souza, Leonardo Azevedo, Vítor Lourenço et al.

Machine Learning (ML) has become essential in several industries. In Computational Science and Engineering (CSE), the complexity of the ML lifecycle comes from the large variety of data, scientists' expertise, tools, and workflows. If data are not tracked properly during the lifecycle, it becomes unfeasible to recreate a ML model from scratch or to explain to stakeholders how it was created. The main limitation of provenance tracking solutions is that they cannot cope with provenance capture and integration of domain and ML data processed in the multiple workflows in the lifecycle while keeping the provenance capture overhead low. To handle this problem, in this paper we contribute with a detailed characterization of provenance data in the ML lifecycle in CSE; a new provenance data representation, called PROV-ML, built on top of W3C PROV and ML Schema; and extensions to a system that tracks provenance from multiple workflows to address the characteristics of ML and CSE, and to allow for provenance queries with a standard vocabulary. We show a practical use in a real case in the Oil and Gas industry, along with its evaluation using 48 GPUs in parallel.