Yonghui Wu

CL
h-index13
31papers
8,284citations
Novelty43%
AI Score39

31 Papers

2.8CLJul 13, 2022Code
N-Grammer: Augmenting Transformers with latent n-grams

Aurko Roy, Rohan Anil, Guangda Lai et al. · deepmind

Transformer models have recently emerged as one of the foundational models in natural language processing, and as a byproduct, there is significant recent interest and investment in scaling these models. However, the training and inference costs of these large Transformer language models are prohibitive, thus necessitating more research in identifying more efficient variants. In this work, we propose a simple yet effective modification to the Transformer architecture inspired by the literature in statistical language modeling, by augmenting the model with n-grams that are constructed from a discrete latent representation of the text sequence. We evaluate our model, the N-Grammer on language modeling on the C4 data-set as well as text classification on the SuperGLUE data-set, and find that it outperforms several strong baselines such as the Transformer and the Primer. We open-source our model for reproducibility purposes in Jax.

57.5CVJun 22, 2022
Scaling Autoregressive Models for Content-Rich Text-to-Image Generation

Jiahui Yu, Yuanzhong Xu, Jing Yu Koh et al. · cmu

We present the Pathways Autoregressive Text-to-Image (Parti) model, which generates high-fidelity photorealistic images and supports content-rich synthesis involving complex compositions and world knowledge. Parti treats text-to-image generation as a sequence-to-sequence modeling problem, akin to machine translation, with sequences of image tokens as the target outputs rather than text tokens in another language. This strategy can naturally tap into the rich body of prior work on large language models, which have seen continued advances in capabilities and performance through scaling data and model sizes. Our approach is simple: First, Parti uses a Transformer-based image tokenizer, ViT-VQGAN, to encode images as sequences of discrete tokens. Second, we achieve consistent quality improvements by scaling the encoder-decoder Transformer model up to 20B parameters, with a new state-of-the-art zero-shot FID score of 7.23 and finetuned FID score of 3.22 on MS-COCO. Our detailed analysis on Localized Narratives as well as PartiPrompts (P2), a new holistic benchmark of over 1600 English prompts, demonstrate the effectiveness of Parti across a wide variety of categories and difficulty aspects. We also explore and highlight limitations of our models in order to define and exemplify key areas of focus for further improvements. See https://parti.research.google/ for high-resolution images.

26.4CLMar 2, 2023
Google USM: Scaling Automatic Speech Recognition Beyond 100 Languages

Yu Zhang, Wei Han, James Qin et al. · meta-ai

We introduce the Universal Speech Model (USM), a single large model that performs automatic speech recognition (ASR) across 100+ languages. This is achieved by pre-training the encoder of the model on a large unlabeled multilingual dataset of 12 million (M) hours spanning over 300 languages, and fine-tuning on a smaller labeled dataset. We use multilingual pre-training with random-projection quantization and speech-text modality matching to achieve state-of-the-art performance on downstream multilingual ASR and speech-to-text translation tasks. We also demonstrate that despite using a labeled training set 1/7-th the size of that used for the Whisper model, our model exhibits comparable or better performance on both in-domain and out-of-domain speech recognition tasks across many languages.

11.9CLMay 9, 2022
Building Machine Translation Systems for the Next Thousand Languages

Ankur Bapna, Isaac Caswell, Julia Kreutzer et al. · deepmind

In this paper we share findings from our effort to build practical machine translation (MT) systems capable of translating across over one thousand languages. We describe results in three research domains: (i) Building clean, web-mined datasets for 1500+ languages by leveraging semi-supervised pre-training for language identification and developing data-driven filtering techniques; (ii) Developing practical MT models for under-served languages by leveraging massively multilingual models trained with supervised parallel data for over 100 high-resource languages and monolingual datasets for an additional 1000+ languages; and (iii) Studying the limitations of evaluation metrics for these languages and conducting qualitative analysis of the outputs from our MT models, highlighting several frequent error modes of these types of models. We hope that our work provides useful insights to practitioners working towards building MT systems for currently understudied languages, and highlights research directions that can complement the weaknesses of massively multilingual models in data-sparse settings.

26.0CVDec 9, 2022
VideoCoCa: Video-Text Modeling with Zero-Shot Transfer from Contrastive Captioners

Shen Yan, Tao Zhu, Zirui Wang et al. · cmu, deepmind

We explore an efficient approach to establish a foundational video-text model. We present VideoCoCa that maximally reuses a pretrained image-text contrastive captioner (CoCa) model and adapt it to video-text tasks with minimal extra training. While previous works adapt image-text models with various cross-frame fusion modules, we find that the generative attentional pooling and contrastive attentional pooling layers in CoCa are instantly adaptable to flattened frame embeddings, yielding state-of-the-art results on zero-shot video classification and zero-shot text-to-video retrieval. Furthermore, we explore lightweight finetuning on top of VideoCoCa, and achieve strong results on video question-answering and video captioning.

32.0CLApr 8, 2022
Show, Don't Tell: Demonstrations Outperform Descriptions for Schema-Guided Task-Oriented Dialogue

Raghav Gupta, Harrison Lee, Jeffrey Zhao et al. · deepmind

Building universal dialogue systems that operate across multiple domains/APIs and generalize to new ones with minimal overhead is a critical challenge. Recent works have leveraged natural language descriptions of schema elements to enable such systems; however, descriptions only indirectly convey schema semantics. In this work, we propose Show, Don't Tell, which prompts seq2seq models with a labeled example dialogue to show the semantics of schema elements rather than tell the model through descriptions. While requiring similar effort from service developers as generating descriptions, we show that using short examples as schema representations with large language models results in state-of-the-art performance on two popular dialogue state tracking benchmarks designed to measure zero-shot generalization - the Schema-Guided Dialogue dataset and the MultiWOZ leave-one-out benchmark.

17.2CLDec 20, 2022
AnyTOD: A Programmable Task-Oriented Dialog System

Jeffrey Zhao, Yuan Cao, Raghav Gupta et al. · deepmind

We propose AnyTOD, an end-to-end, zero-shot task-oriented dialog (TOD) system capable of handling unseen tasks without task-specific training. We view TOD as a program executed by a language model (LM), where program logic and ontology is provided by a designer as a schema. To enable generalization to unseen schemas and programs without prior training, AnyTOD adopts a neuro-symbolic approach. A neural LM keeps track of events occurring during a conversation and a symbolic program implementing the dialog policy is executed to recommend next actions AnyTOD should take. This approach drastically reduces data annotation and model training requirements, addressing the enduring challenge of rapidly adapting a TOD system to unseen tasks and domains. We demonstrate state-of-the-art results on STAR, ABCD and SGD benchmarks. We also demonstrate strong zero-shot transfer ability in low-resource settings, such as zero-shot on MultiWOZ. In addition, we release STARv2, an updated version of the STAR dataset with richer annotations, for benchmarking zero-shot end-to-end TOD models.

57.5CVMay 4, 2022
CoCa: Contrastive Captioners are Image-Text Foundation Models

Jiahui Yu, Zirui Wang, Vijay Vasudevan et al.

Exploring large-scale pretrained foundation models is of significant interest in computer vision because these models can be quickly transferred to many downstream tasks. This paper presents Contrastive Captioner (CoCa), a minimalist design to pretrain an image-text encoder-decoder foundation model jointly with contrastive loss and captioning loss, thereby subsuming model capabilities from contrastive approaches like CLIP and generative methods like SimVLM. In contrast to standard encoder-decoder transformers where all decoder layers attend to encoder outputs, CoCa omits cross-attention in the first half of decoder layers to encode unimodal text representations, and cascades the remaining decoder layers which cross-attend to the image encoder for multimodal image-text representations. We apply a contrastive loss between unimodal image and text embeddings, in addition to a captioning loss on the multimodal decoder outputs which predicts text tokens autoregressively. By sharing the same computational graph, the two training objectives are computed efficiently with minimal overhead. CoCa is pretrained end-to-end and from scratch on both web-scale alt-text data and annotated images by treating all labels simply as text, seamlessly unifying natural language supervision for representation learning. Empirically, CoCa achieves state-of-the-art performance with zero-shot transfer or minimal task-specific adaptation on a broad range of downstream tasks, spanning visual recognition (ImageNet, Kinetics-400/600/700, Moments-in-Time), crossmodal retrieval (MSCOCO, Flickr30K, MSR-VTT), multimodal understanding (VQA, SNLI-VE, NLVR2), and image captioning (MSCOCO, NoCaps). Notably on ImageNet classification, CoCa obtains 86.3% zero-shot top-1 accuracy, 90.6% with a frozen encoder and learned classification head, and new state-of-the-art 91.0% top-1 accuracy on ImageNet with a finetuned encoder.

27.4DCMar 23, 2022
Pathways: Asynchronous Distributed Dataflow for ML

Paul Barham, Aakanksha Chowdhery, Jeff Dean et al.

We present the design of a new large scale orchestration layer for accelerators. Our system, Pathways, is explicitly designed to enable exploration of new systems and ML research ideas, while retaining state of the art performance for current models. Pathways uses a sharded dataflow graph of asynchronous operators that consume and produce futures, and efficiently gang-schedules heterogeneous parallel computations on thousands of accelerators while coordinating data transfers over their dedicated interconnects. Pathways makes use of a novel asynchronous distributed dataflow design that lets the control plane execute in parallel despite dependencies in the data plane. This design, with careful engineering, allows Pathways to adopt a single-controller model that makes it easier to express complex new parallelism patterns. We demonstrate that Pathways can achieve performance parity (~100% accelerator utilization) with state-of-the-art systems when running SPMD computations over 2048 TPUs, while also delivering throughput comparable to the SPMD case for Transformer models that are pipelined across 16 stages, or sharded across two islands of accelerators connected over a data center network.

26.7CVMar 24, 2023Code
VILA: Learning Image Aesthetics from User Comments with Vision-Language Pretraining

Junjie Ke, Keren Ye, Jiahui Yu et al.

Assessing the aesthetics of an image is challenging, as it is influenced by multiple factors including composition, color, style, and high-level semantics. Existing image aesthetic assessment (IAA) methods primarily rely on human-labeled rating scores, which oversimplify the visual aesthetic information that humans perceive. Conversely, user comments offer more comprehensive information and are a more natural way to express human opinions and preferences regarding image aesthetics. In light of this, we propose learning image aesthetics from user comments, and exploring vision-language pretraining methods to learn multimodal aesthetic representations. Specifically, we pretrain an image-text encoder-decoder model with image-comment pairs, using contrastive and generative objectives to learn rich and generic aesthetic semantics without human labels. To efficiently adapt the pretrained model for downstream IAA tasks, we further propose a lightweight rank-based adapter that employs text as an anchor to learn the aesthetic ranking concept. Our results show that our pretrained aesthetic vision-language model outperforms prior works on image aesthetic captioning over the AVA-Captions dataset, and it has powerful zero-shot capability for aesthetic tasks such as zero-shot style classification and zero-shot IAA, surpassing many supervised baselines. With only minimal finetuning parameters using the proposed adapter module, our model achieves state-of-the-art IAA performance over the AVA dataset.

5.2CLMar 14, 2023
Clinical Concept and Relation Extraction Using Prompt-based Machine Reading Comprehension

Cheng Peng, Xi Yang, Zehao Yu et al.

Objective: To develop a natural language processing system that solves both clinical concept extraction and relation extraction in a unified prompt-based machine reading comprehension (MRC) architecture with good generalizability for cross-institution applications. Methods: We formulate both clinical concept extraction and relation extraction using a unified prompt-based MRC architecture and explore state-of-the-art transformer models. We compare our MRC models with existing deep learning models for concept extraction and end-to-end relation extraction using two benchmark datasets developed by the 2018 National NLP Clinical Challenges (n2c2) challenge (medications and adverse drug events) and the 2022 n2c2 challenge (relations of social determinants of health [SDoH]). We also evaluate the transfer learning ability of the proposed MRC models in a cross-institution setting. We perform error analyses and examine how different prompting strategies affect the performance of MRC models. Results and Conclusion: The proposed MRC models achieve state-of-the-art performance for clinical concept and relation extraction on the two benchmark datasets, outperforming previous non-MRC transformer models. GatorTron-MRC achieves the best strict and lenient F1-scores for concept extraction, outperforming previous deep learning models on the two datasets by 1%~3% and 0.7%~1.3%, respectively. For end-to-end relation extraction, GatorTron-MRC and BERT-MIMIC-MRC achieve the best F1-scores, outperforming previous deep learning models by 0.9%~2.4% and 10%-11%, respectively. For cross-institution evaluation, GatorTron-MRC outperforms traditional GatorTron by 6.4% and 16% for the two datasets, respectively. The proposed method is better at handling nested/overlapped concepts, extracting relations, and has good portability for cross-institute applications.

1.7CLMar 31, 2023
Extracting Thyroid Nodules Characteristics from Ultrasound Reports Using Transformer-based Natural Language Processing Methods

Aman Pathak, Zehao Yu, Daniel Paredes et al.

The ultrasound characteristics of thyroid nodules guide the evaluation of thyroid cancer in patients with thyroid nodules. However, the characteristics of thyroid nodules are often documented in clinical narratives such as ultrasound reports. Previous studies have examined natural language processing (NLP) methods in extracting a limited number of characteristics (<9) using rule-based NLP systems. In this study, a multidisciplinary team of NLP experts and thyroid specialists, identified thyroid nodule characteristics that are important for clinical care, composed annotation guidelines, developed a corpus, and compared 5 state-of-the-art transformer-based NLP methods, including BERT, RoBERTa, LongFormer, DeBERTa, and GatorTron, for extraction of thyroid nodule characteristics from ultrasound reports. Our GatorTron model, a transformer-based large language model trained using over 90 billion words of text, achieved the best strict and lenient F1-score of 0.8851 and 0.9495 for the extraction of a total number of 16 thyroid nodule characteristics, and 0.9321 for linking characteristics to nodules, outperforming other clinical transformer models. To the best of our knowledge, this is the first study to systematically categorize and apply transformer-based NLP models to extract a large number of clinical relevant thyroid nodule characteristics from ultrasound reports. This study lays ground for assessing the documentation quality of thyroid ultrasound reports and examining outcomes of patients with thyroid nodules using electronic health records.

3.3CLMar 14, 2023
Contextualized Medication Information Extraction Using Transformer-based Deep Learning Architectures

Aokun Chen, Zehao Yu, Xi Yang et al.

Objective: To develop a natural language processing (NLP) system to extract medications and contextual information that help understand drug changes. This project is part of the 2022 n2c2 challenge. Materials and methods: We developed NLP systems for medication mention extraction, event classification (indicating medication changes discussed or not), and context classification to classify medication changes context into 5 orthogonal dimensions related to drug changes. We explored 6 state-of-the-art pretrained transformer models for the three subtasks, including GatorTron, a large language model pretrained using >90 billion words of text (including >80 billion words from >290 million clinical notes identified at the University of Florida Health). We evaluated our NLP systems using annotated data and evaluation scripts provided by the 2022 n2c2 organizers. Results:Our GatorTron models achieved the best F1-scores of 0.9828 for medication extraction (ranked 3rd), 0.9379 for event classification (ranked 2nd), and the best micro-average accuracy of 0.9126 for context classification. GatorTron outperformed existing transformer models pretrained using smaller general English text and clinical text corpora, indicating the advantage of large language models. Conclusion: This study demonstrated the advantage of using large transformer models for contextual medication information extraction from clinical narratives.

8.9CLOct 10, 2023
Model Tuning or Prompt Tuning? A Study of Large Language Models for Clinical Concept and Relation Extraction

Cheng Peng, Xi Yang, Kaleb E Smith et al.

Objective To develop soft prompt-based learning algorithms for large language models (LLMs), examine the shape of prompts, prompt-tuning using frozen/unfrozen LLMs, transfer learning, and few-shot learning abilities. Methods We developed a soft prompt-based LLM model and compared 4 training strategies including (1) fine-tuning without prompts; (2) hard-prompt with unfrozen LLMs; (3) soft-prompt with unfrozen LLMs; and (4) soft-prompt with frozen LLMs. We evaluated 7 pretrained LLMs using the 4 training strategies for clinical concept and relation extraction on two benchmark datasets. We evaluated the transfer learning ability of the prompt-based learning algorithms in a cross-institution setting. We also assessed the few-shot learning ability. Results and Conclusion When LLMs are unfrozen, GatorTron-3.9B with soft prompting achieves the best strict F1-scores of 0.9118 and 0.8604 for concept extraction, outperforming the traditional fine-tuning and hard prompt-based models by 0.6~3.1% and 1.2~2.9%, respectively; GatorTron-345M with soft prompting achieves the best F1-scores of 0.8332 and 0.7488 for end-to-end relation extraction, outperforming the other two models by 0.2~2% and 0.6~11.7%, respectively. When LLMs are frozen, small (i.e., 345 million parameters) LLMs have a big gap to be competitive with unfrozen models; scaling LLMs up to billions of parameters makes frozen LLMs competitive with unfrozen LLMs. For cross-institute evaluation, soft prompting with a frozen GatorTron-8.9B model achieved the best performance. This study demonstrates that (1) machines can learn soft prompts better than humans, (2) frozen LLMs have better few-shot learning ability and transfer learning ability to facilitate muti-institution applications, and (3) frozen LLMs require large models.

15.2CLJul 22, 2024
UF-HOBI at "Discharge Me!": A Hybrid Solution for Discharge Summary Generation Through Prompt-based Tuning of GatorTronGPT Models

Mengxian Lyu, Cheng Peng, Daniel Paredes et al.

Automatic generation of discharge summaries presents significant challenges due to the length of clinical documentation, the dispersed nature of patient information, and the diverse terminology used in healthcare. This paper presents a hybrid solution for generating discharge summary sections as part of our participation in the "Discharge Me!" Challenge at the BioNLP 2024 Shared Task. We developed a two-stage generation method using both extractive and abstractive techniques, in which we first apply name entity recognition (NER) to extract key clinical concepts, which are then used as input for a prompt-tuning-based GatorTronGPT model to generate coherent text for two important sections including "Brief Hospital Course" and "Discharge Instructions". Our system was ranked 5th in this challenge, achieving an overall score of 0.284. The results demonstrate the effectiveness of our hybrid solution in improving the quality of automated discharge section generation.

0.5CLMar 31, 2023
Identifying Symptoms of Delirium from Clinical Narratives Using Natural Language Processing

Aokun Chen, Daniel Paredes, Zehao Yu et al.

Delirium is an acute decline or fluctuation in attention, awareness, or other cognitive function that can lead to serious adverse outcomes. Despite the severe outcomes, delirium is frequently unrecognized and uncoded in patients' electronic health records (EHRs) due to its transient and diverse nature. Natural language processing (NLP), a key technology that extracts medical concepts from clinical narratives, has shown great potential in studies of delirium outcomes and symptoms. To assist in the diagnosis and phenotyping of delirium, we formed an expert panel to categorize diverse delirium symptoms, composed annotation guidelines, created a delirium corpus with diverse delirium symptoms, and developed NLP methods to extract delirium symptoms from clinical notes. We compared 5 state-of-the-art transformer models including 2 models (BERT and RoBERTa) from the general domain and 3 models (BERT_MIMIC, RoBERTa_MIMIC, and GatorTron) from the clinical domain. GatorTron achieved the best strict and lenient F1 scores of 0.8055 and 0.8759, respectively. We conducted an error analysis to identify challenges in annotating delirium symptoms and developing NLP systems. To the best of our knowledge, this is the first large language model-based delirium symptom extraction system. Our study lays the foundation for the future development of computable phenotypes and diagnosis methods for delirium.

26.0LGApr 7, 2025
A Unified Pairwise Framework for RLHF: Bridging Generative Reward Modeling and Policy Optimization

Wenyuan Xu, Xiaochen Zuo, Chao Xin et al.

Reinforcement Learning from Human Feedback (RLHF) has emerged as a important paradigm for aligning large language models (LLMs) with human preferences during post-training. This framework typically involves two stages: first, training a reward model on human preference data, followed by optimizing the language model using reinforcement learning algorithms. However, current RLHF approaches may constrained by two limitations. First, existing RLHF frameworks often rely on Bradley-Terry models to assign scalar rewards based on pairwise comparisons of individual responses. However, this approach imposes significant challenges on reward model (RM), as the inherent variability in prompt-response pairs across different contexts demands robust calibration capabilities from the RM. Second, reward models are typically initialized from generative foundation models, such as pre-trained or supervised fine-tuned models, despite the fact that reward models perform discriminative tasks, creating a mismatch. This paper introduces Pairwise-RL, a RLHF framework that addresses these challenges through a combination of generative reward modeling and a pairwise proximal policy optimization (PPO) algorithm. Pairwise-RL unifies reward model training and its application during reinforcement learning within a consistent pairwise paradigm, leveraging generative modeling techniques to enhance reward model performance and score calibration. Experimental evaluations demonstrate that Pairwise-RL outperforms traditional RLHF frameworks across both internal evaluation datasets and standard public benchmarks, underscoring its effectiveness in improving alignment and model behavior.

2.3AIFeb 3, 2024
Feasibility of Identifying Factors Related to Alzheimer's Disease and Related Dementia in Real-World Data

Aokun Chen, Qian Li, Yu Huang et al.

A comprehensive view of factors associated with AD/ADRD will significantly aid in studies to develop new treatments for AD/ADRD and identify high-risk populations and patients for prevention efforts. In our study, we summarized the risk factors for AD/ADRD by reviewing existing meta-analyses and review articles on risk and preventive factors for AD/ADRD. In total, we extracted 477 risk factors in 10 categories from 537 studies. We constructed an interactive knowledge map to disseminate our study results. Most of the risk factors are accessible from structured Electronic Health Records (EHRs), and clinical narratives show promise as information sources. However, evaluating genomic risk factors using RWD remains a challenge, as genetic testing for AD/ADRD is still not a common practice and is poorly documented in both structured and unstructured EHRs. Considering the constantly evolving research on AD/ADRD risk factors, literature mining via NLP methods offers a solution to automatically update our knowledge map.

7.1LGJun 10, 2025
A Topic Modeling Analysis of Stigma Dimensions, Social, and Related Behavioral Circumstances in Clinical Notes Among Patients with HIV

Ziyi Chen, Yiyang Liu, Mattia Prosperi et al.

Objective: To characterize stigma dimensions, social, and related behavioral circumstances in people living with HIV(PLWHs) seeking care, using NLP methods applied to a large collection of EHR clinical notes from a large integrated health system in the southeast United States. Methods: We identified a cohort of PLWHs from the UF Health IDR and performed topic modeling analysis using Latent Dirichlet Allocation to uncover stigma-related dimensions and related social and behavioral contexts. Domain experts created a seed list of HIV-related stigma keywords, then applied a snowball strategy to review notes for additional terms until saturation was reached iteratively. To identify more target topics, we tested three keyword-based filtering strategies. The detected topics were evaluated using three widely used metrics and manually reviewed by specialists. In addition, we conducted word frequency analysis and topic variation analysis among subgroups to examine differences across age and sex-specific demographics. Results: We identified 9140 PLWHs at UF Health and collected 2.9 million clinical notes. Through the iterative keyword approach, we generated a list of 91 keywords associated with HIV-related stigma. Topic modeling on sentences containing at least one keyword uncovered a wide range of topic themes, such as "Mental Health Concern, Stigma", "Treatment Refusal, Isolation", and "Substance Abuse". Topic variation analysis across age subgroups revealed substantial differences. Conclusion: Extracting and understanding the HIV-related stigma and associated social and behavioral circumstances from EHR clinical notes enables scalable, time-efficient assessment and overcoming the limitations of traditional questionnaires. Findings from this research provide actionable insights to inform patient care and interventions to improve HIV-care outcomes.

8.3CLMay 7, 2025
Natural Language Generation in Healthcare: A Review of Methods and Applications

Mengxian Lyu, Xiaohan Li, Ziyi Chen et al.

Natural language generation (NLG) is the key technology to achieve generative artificial intelligence (AI). With the breakthroughs in large language models (LLMs), NLG has been widely used in various medical applications, demonstrating the potential to enhance clinical workflows, support clinical decision-making, and improve clinical documentation. Heterogeneous and diverse medical data modalities, such as medical text, images, and knowledge bases, are utilized in NLG. Researchers have proposed many generative models and applied them in a number of healthcare applications. There is a need for a comprehensive review of NLG methods and applications in the medical domain. In this study, we systematically reviewed 113 scientific publications from a total of 3,988 NLG-related articles identified using a literature search, focusing on data modality, model architecture, clinical applications, and evaluation methods. Following PRISMA (Preferred Reporting Items for Systematic reviews and Meta-Analyses) guidelines, we categorize key methods, identify clinical applications, and assess their capabilities, limitations, and emerging challenges. This timely review covers the key NLG technologies and medical applications and provides valuable insights for future studies to leverage NLG to transform medical discovery and healthcare.

5.5CLMar 19, 2024
Automatic Summarization of Doctor-Patient Encounter Dialogues Using Large Language Model through Prompt Tuning

Mengxian Lyu, Cheng Peng, Xiaohan Li et al.

Automatic text summarization (ATS) is an emerging technology to assist clinicians in providing continuous and coordinated care. This study presents an approach to summarize doctor-patient dialogues using generative large language models (LLMs). We developed prompt-tuning algorithms to instruct generative LLMs to summarize clinical text. We examined the prompt-tuning strategies, the size of soft prompts, and the few-short learning ability of GatorTronGPT, a generative clinical LLM developed using 277 billion clinical and general English words with up to 20 billion parameters. We compared GatorTronGPT with a previous solution based on fine-tuning of a widely used T5 model, using a clinical benchmark dataset MTS-DIALOG. The experimental results show that the GatorTronGPT- 20B model achieved the best performance on all evaluation metrics. The proposed solution has a low computing cost as the LLM parameters are not updated during prompt-tuning. This study demonstrates the efficiency of generative clinical LLMs for clinical ATS through prompt tuning.

1.0CLMar 19, 2024
Improving Generalizability of Extracting Social Determinants of Health Using Large Language Models through Prompt-tuning

Cheng Peng, Zehao Yu, Kaleb E Smith et al.

The progress in natural language processing (NLP) using large language models (LLMs) has greatly improved patient information extraction from clinical narratives. However, most methods based on the fine-tuning strategy have limited transfer learning ability for cross-domain applications. This study proposed a novel approach that employs a soft prompt-based learning architecture, which introduces trainable prompts to guide LLMs toward desired outputs. We examined two types of LLM architectures, including encoder-only GatorTron and decoder-only GatorTronGPT, and evaluated their performance for the extraction of social determinants of health (SDoH) using a cross-institution dataset from the 2022 n2c2 challenge and a cross-disease dataset from the University of Florida (UF) Health. The results show that decoder-only LLMs with prompt tuning achieved better performance in cross-domain applications. GatorTronGPT achieved the best F1 scores for both datasets, outperforming traditional fine-tuned GatorTron by 8.9% and 21.8% in a cross-institution setting, and 5.5% and 14.5% in a cross-disease setting.

14.3CLFeb 3, 2022
Self-supervised Learning with Random-projection Quantizer for Speech Recognition

Chung-Cheng Chiu, James Qin, Yu Zhang et al.

We present a simple and effective self-supervised learning approach for speech recognition. The approach learns a model to predict the masked speech signals, in the form of discrete labels generated with a random-projection quantizer. In particular the quantizer projects speech inputs with a randomly initialized matrix, and does a nearest-neighbor lookup in a randomly-initialized codebook. Neither the matrix nor the codebook is updated during self-supervised learning. Since the random-projection quantizer is not trained and is separated from the speech recognition model, the design makes the approach flexible and is compatible with universal speech recognition architecture. On LibriSpeech our approach achieves similar word-error-rates as previous work using self-supervised learning with non-streaming models, and provides lower word-error-rates and latency than wav2vec 2.0 and w2v-BERT with streaming models. On multilingual tasks the approach also provides significant improvement over wav2vec 2.0 and w2v-BERT.

19.4CLFeb 2, 2022
GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Records

Xi Yang, Aokun Chen, Nima PourNejatian et al.

There is an increasing interest in developing artificial intelligence (AI) systems to process and interpret electronic health records (EHRs). Natural language processing (NLP) powered by pretrained language models is the key technology for medical AI systems utilizing clinical narratives. However, there are few clinical language models, the largest of which trained in the clinical domain is comparatively small at 110 million parameters (compared with billions of parameters in the general domain). It is not clear how large clinical language models with billions of parameters can help medical AI systems utilize unstructured EHRs. In this study, we develop from scratch a large clinical language model - GatorTron - using >90 billion words of text (including >82 billion words of de-identified clinical text) and systematically evaluate it on 5 clinical NLP tasks including clinical concept extraction, medical relation extraction, semantic textual similarity, natural language inference (NLI), and medical question answering (MQA). We examine how (1) scaling up the number of parameters and (2) scaling up the size of the training data could benefit these NLP tasks. GatorTron models scale up the clinical language model from 110 million to 8.9 billion parameters and improve 5 clinical NLP tasks (e.g., 9.6% and 9.5% improvement in accuracy for NLI and MQA), which can be applied to medical AI systems to improve healthcare delivery. The GatorTron models are publicly available at: https://catalog.ngc.nvidia.com/orgs/nvidia/teams/clara/models/gatortron_og.

7.5CLJan 21, 2022Code
Description-Driven Task-Oriented Dialog Modeling

Jeffrey Zhao, Raghav Gupta, Yuan Cao et al.

Task-oriented dialogue (TOD) systems are required to identify key information from conversations for the completion of given tasks. Such information is conventionally specified in terms of intents and slots contained in task-specific ontology or schemata. Since these schemata are designed by system developers, the naming convention for slots and intents is not uniform across tasks, and may not convey their semantics effectively. This can lead to models memorizing arbitrary patterns in data, resulting in suboptimal performance and generalization. In this paper, we propose that schemata should be modified by replacing names or notations entirely with natural language descriptions. We show that a language description-driven system exhibits better understanding of task specifications, higher performance on state tracking, improved data efficiency, and effective zero-shot transfer to unseen tasks. Following this paradigm, we present a simple yet effective Description-Driven Dialog State Tracking (D3ST) model, which relies purely on schema descriptions and an "index-picking" mechanism. We demonstrate the superiority in quality, data efficiency and robustness of our approach as measured on the MultiWOZ (Budzianowski et al.,2018), SGD (Rastogi et al., 2020), and the recent SGD-X (Lee et al., 2021) benchmarks.

4.9CLOct 13, 2021Code
SGD-X: A Benchmark for Robust Generalization in Schema-Guided Dialogue Systems

Harrison Lee, Raghav Gupta, Abhinav Rastogi et al.

Zero/few-shot transfer to unseen services is a critical challenge in task-oriented dialogue research. The Schema-Guided Dialogue (SGD) dataset introduced a paradigm for enabling models to support any service in zero-shot through schemas, which describe service APIs to models in natural language. We explore the robustness of dialogue systems to linguistic variations in schemas by designing SGD-X - a benchmark extending SGD with semantically similar yet stylistically diverse variants for every schema. We observe that two top state tracking models fail to generalize well across schema variants, measured by joint goal accuracy and a novel metric for measuring schema sensitivity. Additionally, we present a simple model-agnostic data augmentation method to improve schema robustness.

26.1ASJul 27, 2018
A Comparison of Techniques for Language Model Integration in Encoder-Decoder Speech Recognition

Shubham Toshniwal, Anjuli Kannan, Chung-Cheng Chiu et al.

Attention-based recurrent neural encoder-decoder models present an elegant solution to the automatic speech recognition problem. This approach folds the acoustic model, pronunciation model, and language model into a single network and requires only a parallel corpus of speech and text for training. However, unlike in conventional approaches that combine separate acoustic and language models, it is not clear how to use additional (unpaired) text. While there has been previous work on methods addressing this problem, a thorough comparison among methods is still lacking. In this paper, we compare a suite of past methods and some of our own proposed methods for using unpaired text data to improve encoder-decoder models. For evaluation, we use the medium-sized Switchboard data set and the large-scale Google voice search and dictation data sets. Our results confirm the benefits of using unpaired text across a range of methods and data sets. Surprisingly, for first-pass decoding, the rather simple approach of shallow fusion performs best across data sets. However, for Google data sets we find that cold fusion has a lower oracle error rate and outperforms other approaches after second-pass rescoring on the Google voice search data set.

34.5CLApr 26, 2018Code
The Best of Both Worlds: Combining Recent Advances in Neural Machine Translation

Mia Xu Chen, Orhan Firat, Ankur Bapna et al.

The past year has witnessed rapid advances in sequence-to-sequence (seq2seq) modeling for Machine Translation (MT). The classic RNN-based approaches to MT were first out-performed by the convolutional seq2seq model, which was then out-performed by the more recent Transformer model. Each of these new approaches consists of a fundamental architecture accompanied by a set of modeling and training techniques that are in principle applicable to other seq2seq architectures. In this paper, we tease apart the new architectures and their accompanying techniques in two ways. First, we identify several key modeling and training techniques, and apply them to the RNN architecture, yielding a new RNMT+ model that outperforms all of the three fundamental architectures on the benchmark WMT'14 English to French and English to German tasks. Second, we analyze the properties of each fundamental seq2seq architecture and devise new hybrid architectures intended to combine their strengths. Our hybrid models obtain further improvements, outperforming the RNMT+ model on both benchmark datasets.

31.8ASDec 6, 2017
An analysis of incorporating an external language model into a sequence-to-sequence model

Anjuli Kannan, Yonghui Wu, Patrick Nguyen et al.

Attention-based sequence-to-sequence models for automatic speech recognition jointly train an acoustic model, language model, and alignment mechanism. Thus, the language model component is only trained on transcribed audio-text pairs. This leads to the use of shallow fusion with an external language model at inference time. Shallow fusion refers to log-linear interpolation with a separately trained language model at each step of the beam search. In this work, we investigate the behavior of shallow fusion across a range of conditions: different types of language models, different decoding units, and different tasks. On Google Voice Search, we demonstrate that the use of shallow fusion with a neural LM with wordpieces yields a 9.1% relative word error rate reduction (WERR) over our competitive attention-based sequence-to-sequence model, obviating the need for second-pass rescoring.

5.4CLDec 5, 2017
No Need for a Lexicon? Evaluating the Value of the Pronunciation Lexica in End-to-End Models

Tara N. Sainath, Rohit Prabhavalkar, Shankar Kumar et al.

For decades, context-dependent phonemes have been the dominant sub-word unit for conventional acoustic modeling systems. This status quo has begun to be challenged recently by end-to-end models which seek to combine acoustic, pronunciation, and language model components into a single neural network. Such systems, which typically predict graphemes or words, simplify the recognition process since they remove the need for a separate expert-curated pronunciation lexicon to map from phoneme-based units to words. However, there has been little previous work comparing phoneme-based versus grapheme-based sub-word units in the end-to-end modeling framework, to determine whether the gains from such approaches are primarily due to the new probabilistic model, or from the joint learning of the various components with grapheme-based units. In this work, we conduct detailed experiments which are aimed at quantifying the value of phoneme-based pronunciation lexica in the context of end-to-end models. We examine phoneme-based end-to-end models, which are contrasted against grapheme-based ones on a large vocabulary English Voice-search task, where we find that graphemes do indeed outperform phonemes. We also compare grapheme and phoneme-based approaches on a multi-dialect English task, which once again confirm the superiority of graphemes, greatly simplifying the system for recognizing multiple dialects.

15.4CLDec 5, 2017
Minimum Word Error Rate Training for Attention-based Sequence-to-Sequence Models

Rohit Prabhavalkar, Tara N. Sainath, Yonghui Wu et al.

Sequence-to-sequence models, such as attention-based models in automatic speech recognition (ASR), are typically trained to optimize the cross-entropy criterion which corresponds to improving the log-likelihood of the data. However, system performance is usually measured in terms of word error rate (WER), not log-likelihood. Traditional ASR systems benefit from discriminative sequence training which optimizes criteria such as the state-level minimum Bayes risk (sMBR) which are more closely related to WER. In the present work, we explore techniques to train attention-based models to directly minimize expected word error rate. We consider two loss functions which approximate the expected number of word errors: either by sampling from the model, or by using N-best lists of decoded hypotheses, which we find to be more effective than the sampling-based method. In experimental evaluations, we find that the proposed training procedure improves performance by up to 8.2% relative to the baseline system. This allows us to train grapheme-based, uni-directional attention-based models which match the performance of a traditional, state-of-the-art, discriminative sequence-trained system on a mobile voice-search task.