Hengtao Guo

Qianchao Wang, Shijun Zhang, Dong Zeng et al.

In this paper, we propose a new super-expressive activation function called the Parametric Elementary Universal Activation Function (PEUAF). We demonstrate the effectiveness of PEUAF through systematic and comprehensive experiments on various industrial and image datasets, including CIFAR10, Tiny-ImageNet, and ImageNet. Moreover, we significantly generalize the family of super-expressive activation functions, whose existence has been demonstrated in several recent works by showing that any continuous function can be approximated to any desired accuracy by a fixed-size network with a specific super-expressive activation function. Specifically, our work addresses two major bottlenecks in impeding the development of super-expressive activation functions: the limited identification of super-expressive functions, which raises doubts about their broad applicability, and their often peculiar forms, which lead to skepticism regarding their scalability and practicality in real-world applications.

Xinrui Song, Hengtao Guo, Xuanang Xu et al.

Prostate cancer biopsy benefits from accurate fusion of transrectal ultrasound (TRUS) and magnetic resonance (MR) images. In the past few years, convolutional neural networks (CNNs) have been proved powerful in extracting image features crucial for image registration. However, challenging applications and recent advances in computer vision suggest that CNNs are quite limited in its ability to understand spatial correspondence between features, a task in which the self-attention mechanism excels. This paper aims to develop a self-attention mechanism specifically for cross-modal image registration. Our proposed cross-modal attention block effectively maps each of the features in one volume to all features in the corresponding volume. Our experimental results demonstrate that a CNN network designed with the cross-modal attention block embedded outperforms an advanced CNN network 10 times of its size. We also incorporated visualization techniques to improve the interpretability of our network. The source code of our work is available at https://github.com/DIAL-RPI/Attention-Reg .

Hengtao Guo, Sheng Xu, Bradford Wood et al.

Transrectal ultrasound (US) is the most commonly used imaging modality to guide prostate biopsy and its 3D volume provides even richer context information. Current methods for 3D volume reconstruction from freehand US scans require external tracking devices to provide spatial position for every frame. In this paper, we propose a deep contextual learning network (DCL-Net), which can efficiently exploit the image feature relationship between US frames and reconstruct 3D US volumes without any tracking device. The proposed DCL-Net utilizes 3D convolutions over a US video segment for feature extraction. An embedded self-attention module makes the network focus on the speckle-rich areas for better spatial movement prediction. We also propose a novel case-wise correlation loss to stabilize the training process for improved accuracy. Highly promising results have been obtained by using the developed method. The experiments with ablation studies demonstrate superior performance of the proposed method by comparing against other state-of-the-art methods. Source code of this work is publicly available at https://github.com/DIAL-RPI/FreehandUSRecon.

Hengtao Guo, Uwe Kruger, Ge Wang et al.

Recent studies have highlighted the high correlation between cardiovascular diseases (CVD) and lung cancer, and both are associated with significant morbidity and mortality. Low-Dose CT (LCDT) scans have led to significant improvements in the accuracy of lung cancer diagnosis and thus the reduction of cancer deaths. However, the high correlation between lung cancer and CVD has not been well explored for mortality prediction. This paper introduces a knowledge-based analytical method using deep convolutional neural network (CNN) for all-cause mortality prediction. The underlying approach combines structural image features extracted from CNNs, based on LDCT volume in different scale, and clinical knowledge obtained from quantitative measurements, to comprehensively predict the mortality risk of lung cancer screening subjects. The introduced method is referred to here as the Knowledge-based Analysis of Mortality Prediction Network, or KAMP-Net. It constitutes a collaborative framework that utilizes both imaging features and anatomical information, instead of completely relying on automatic feature extraction. Our work demonstrates the feasibility of incorporating quantitative clinical measurements to assist CNNs in all-cause mortality prediction from chest LDCT images. The results of this study confirm that radiologist defined features are an important complement to CNNs to achieve a more comprehensive feature extraction. Thus, the proposed KAMP-Net has shown to achieve a superior performance when compared to other methods. Our code is available at https://github.com/DIAL-RPI/KAMP-Net.

Tingting Wu, Ruyi Min, Peixuan Song et al.

The accurate segmentation of retinal blood vessels plays a crucial role in the early diagnosis and treatment of various ophthalmic diseases. Designing a network model for this task requires meticulous tuning and extensive experimentation to handle the tiny and intertwined morphology of retinal blood vessels. To tackle this challenge, Neural Architecture Search (NAS) methods are developed to fully explore the space of potential network architectures and go after the most powerful one. Inspired by neuronal diversity which is the biological foundation of all kinds of intelligent behaviors in our brain, this paper introduces a novel and foundational approach to neural network design, termed ``neuron programming'', to automatically search neuronal types into a network to enhance a network's representation ability at the neuronal level, which is complementary to architecture-level enhancement done by NAS. Additionally, to mitigate the time and computational intensity of neuron programming, we develop a hypernetwork that leverages the search-derived architectural information to predict optimal neuronal configurations. Comprehensive experiments validate that neuron programming can achieve competitive performance in retinal blood segmentation, demonstrating the strong potential of neuronal diversity in medical image analysis.

Hengtao Guo, Xuanang Xu, Sheng Xu et al.

Fusing intra-operative 2D transrectal ultrasound (TRUS) image with pre-operative 3D magnetic resonance (MR) volume to guide prostate biopsy can significantly increase the yield. However, such a multimodal 2D/3D registration problem is a very challenging task. In this paper, we propose an end-to-end frame-to-volume registration network (FVR-Net), which can efficiently bridge the previous research gaps by aligning a 2D TRUS frame with a 3D TRUS volume without requiring hardware tracking. The proposed FVR-Net utilizes a dual-branch feature extraction module to extract the information from TRUS frame and volume to estimate transformation parameters. We also introduce a differentiable 2D slice sampling module which allows gradients backpropagating from an unsupervised image similarity loss for content correspondence learning. Our model shows superior efficiency for real-time interventional guidance with highly competitive registration accuracy.

Hengtao Guo, Sheng Xu, Bradford J. Wood et al.

Reconstructed 3D ultrasound volume provides more context information compared to a sequence of 2D scanning frames, which is desirable for various clinical applications such as ultrasound-guided prostate biopsy. Nevertheless, 3D volume reconstruction from freehand 2D scans is a very challenging problem, especially without the use of external tracking devices. Recent deep learning based methods demonstrate the potential of directly estimating inter-frame motion between consecutive ultrasound frames. However, such algorithms are specific to particular transducers and scanning trajectories associated with the training data, which may not be generalized to other image acquisition settings. In this paper, we tackle the data acquisition difference as a domain shift problem and propose a novel domain adaptation strategy to adapt deep learning algorithms to data acquired with different transducers. Specifically, feature extractors that generate transducer-invariant features from different datasets are trained by minimizing the discrepancy between deep features of paired samples in a latent space. Our results show that the proposed domain adaptation method can successfully align different feature distributions while preserving the transducer-specific information for universal freehand ultrasound volume reconstruction.

Hanqing Chao, Hongming Shan, Fatemeh Homayounieh et al.

Cancer patients have a higher risk of cardiovascular disease (CVD) mortality than the general population. Low dose computed tomography (LDCT) for lung cancer screening offers an opportunity for simultaneous CVD risk estimation in at-risk patients. Our deep learning CVD risk prediction model, trained with 30,286 LDCTs from the National Lung Cancer Screening Trial, achieved an area under the curve (AUC) of 0.871 on a separate test set of 2,085 subjects and identified patients with high CVD mortality risks (AUC of 0.768). We validated our model against ECG-gated cardiac CT based markers, including coronary artery calcification (CAC) score, CAD-RADS score, and MESA 10-year risk score from an independent dataset of 335 subjects. Our work shows that, in high-risk patients, deep learning can convert LDCT for lung cancer screening into a dual-screening quantitative tool for CVD risk estimation.

Fenglei Fan, Dayang Wang, Hengtao Guo et al.

In established network architectures, shortcut connections are often used to take the outputs of earlier layers as additional inputs to later layers. Despite the extraordinary effectiveness of shortcuts, there remain open questions on the mechanism and characteristics. For example, why are shortcuts powerful? Why do shortcuts generalize well? In this paper, we investigate the expressivity and generalizability of a novel sparse shortcut topology. First, we demonstrate that this topology can empower a one-neuron-wide deep network to approximate any univariate continuous function. Then, we present a novel width-bounded universal approximator in contrast to depth-bounded universal approximators and extend the approximation result to a family of equally competent networks. Furthermore, with generalization bound theory, we show that the proposed shortcut topology enjoys excellent generalizability. Finally, we corroborate our theoretical analyses by comparing the proposed topology with popular architectures, including ResNet and DenseNet, on well-known benchmarks and perform a saliency map analysis to interpret the proposed topology. Our work helps enhance the understanding of the role of shortcuts and suggests further opportunities to innovate neural architectures.

Pingkun Yan, Hengtao Guo, Ge Wang et al.

Known for its high morbidity and mortality rates, lung cancer poses a significant threat to human health and well-being. However, the same population is also at high risk for other deadly diseases, such as cardiovascular disease. Since Low-Dose CT (LDCT) has been shown to significantly improve the lung cancer diagnosis accuracy, it will be very useful for clinical practice to predict the all-cause mortality for lung cancer patients to take corresponding actions. In this paper, we propose a deep learning based method, which takes both chest LDCT image patches and coronary artery calcification risk scores as input, for direct prediction of mortality risk of lung cancer subjects. The proposed method is called Hybrid Risk Network (HyRiskNet) for mortality risk prediction, which is an end-to-end framework utilizing hybrid imaging features, instead of completely relying on automatic feature extraction. Our work demonstrates the feasibility of using deep learning techniques for all-cause lung cancer mortality prediction from chest LDCT images. The experimental results show that the proposed HyRiskNet can achieve superior performance compared with the neural networks with only image input and with other traditional semi-automatic scoring methods. The study also indicates that radiologist defined features can well complement convolutional neural networks for more comprehensive feature extraction.