Daniil Sulimov
Large Language Models (LLMs) are increasingly adopted for complex scientific text generation tasks, yet they often suffer from limitations in accuracy, consistency, and hallucination control. This thesis introduces a Parameter-Efficient Fine-Tuning (PEFT) approach tailored for GPT-like models, aiming to mitigate hallucinations and enhance reproducibility, particularly in the computational domain of mass spectrometry. We implemented Low-Rank Adaptation (LoRA) adapters to refine GPT-2, termed MS-GPT, using a specialized corpus of mass spectrometry literature. Through novel evaluation methods applied to LLMs, including BLEU, ROUGE, and Perplexity scores, the fine-tuned MS-GPT model demonstrated superior text coherence and reproducibility compared to the baseline GPT-2, confirmed through statistical analysis with the Wilcoxon rank-sum test. Further, we propose a reproducibility metric based on cosine similarity of model outputs under controlled prompts, showcasing MS-GPT's enhanced stability. This research highlights PEFT's potential to optimize LLMs for scientific contexts, reducing computational costs while improving model reliability.