Rui Shi

Jiancheng Yang, Rui Shi, Donglai Wei et al.

We introduce MedMNIST v2, a large-scale MNIST-like dataset collection of standardized biomedical images, including 12 datasets for 2D and 6 datasets for 3D. All images are pre-processed into a small size of 28x28 (2D) or 28x28x28 (3D) with the corresponding classification labels so that no background knowledge is required for users. Covering primary data modalities in biomedical images, MedMNIST v2 is designed to perform classification on lightweight 2D and 3D images with various dataset scales (from 100 to 100,000) and diverse tasks (binary/multi-class, ordinal regression, and multi-label). The resulting dataset, consisting of 708,069 2D images and 10,214 3D images in total, could support numerous research / educational purposes in biomedical image analysis, computer vision, and machine learning. We benchmark several baseline methods on MedMNIST v2, including 2D / 3D neural networks and open-source / commercial AutoML tools. The data and code are publicly available at https://medmnist.com/.

Jiancheng Yang, Rui Shi, Bingbing Ni

We present MedMNIST, a collection of 10 pre-processed medical open datasets. MedMNIST is standardized to perform classification tasks on lightweight 28x28 images, which requires no background knowledge. Covering the primary data modalities in medical image analysis, it is diverse on data scale (from 100 to 100,000) and tasks (binary/multi-class, ordinal regression and multi-label). MedMNIST could be used for educational purpose, rapid prototyping, multi-modal machine learning or AutoML in medical image analysis. Moreover, MedMNIST Classification Decathlon is designed to benchmark AutoML algorithms on all 10 datasets; We have compared several baseline methods, including open-source or commercial AutoML tools. The datasets, evaluation code and baseline methods for MedMNIST are publicly available at https://medmnist.github.io/.

Qiaoqiao Jin, Rui Shi, Yishun Dou et al.

Current Facial Action Unit (FAU) detection methods generally encounter difficulties due to the scarcity of labeled video training data and the limited number of training face IDs, which renders the trained feature extractor insufficient coverage for modeling the large diversity of inter-person facial structures and movements. To explicitly address the above challenges, we propose a novel video-level pre-training scheme by fully exploring the multi-label property of FAUs in the video as well as the temporal label consistency. At the heart of our design is a pre-trained video feature extractor based on the video-masked autoencoder together with a fine-tuning network that jointly completes the multi-level video FAUs analysis tasks, \emph{i.e.} integrating both video-level and frame-level FAU detections, thus dramatically expanding the supervision set from sparse FAUs annotations to ALL video frames including masked ones. Moreover, we utilize inter-frame and intra-frame AU pair state matrices as prior knowledge to guide network training instead of traditional Graph Neural Networks, for better temporal supervision. Our approach demonstrates substantial enhancement in performance compared to the existing state-of-the-art methods used in BP4D and DISFA FAUs datasets.