Jakob Weiß

h-index7
2papers
219citations

2 Papers

6.6GRJun 9, 2021
Deep Direct Volume Rendering: Learning Visual Feature Mappings From Exemplary Images

Jakob Weiss, Nassir Navab

Volume Rendering is an important technique for visualizing three-dimensional scalar data grids and is commonly employed for scientific and medical image data. Direct Volume Rendering (DVR) is a well established and efficient rendering algorithm for volumetric data. Neural rendering uses deep neural networks to solve inverse rendering tasks and applies techniques similar to DVR. However, it has not been demonstrated successfully for the rendering of scientific volume data. In this work, we introduce Deep Direct Volume Rendering (DeepDVR), a generalization of DVR that allows for the integration of deep neural networks into the DVR algorithm. We conceptualize the rendering in a latent color space, thus enabling the use of deep architectures to learn implicit mappings for feature extraction and classification, replacing explicit feature design and hand-crafted transfer functions. Our generalization serves to derive novel volume rendering architectures that can be trained end-to-end directly from examples in image space, obviating the need to manually define and fine-tune multidimensional transfer functions while providing superior classification strength. We further introduce a novel stepsize annealing scheme to accelerate the training of DeepDVR models and validate its effectiveness in a set of experiments. We validate our architectures on two example use cases: (1) learning an optimized rendering from manually adjusted reference images for a single volume and (2) learning advanced visualization concepts like shading and semantic colorization that generalize to unseen volume data. We find that deep volume rendering architectures with explicit modeling of the DVR pipeline effectively enable end-to-end learning of scientific volume rendering tasks from target images.

4.6CVFeb 18, 2018
Fast 5DOF Needle Tracking in iOCT

Jakob Weiss, Nicola Rieke, Mohammad Ali Nasseri et al.

Purpose. Intraoperative Optical Coherence Tomography (iOCT) is an increasingly available imaging technique for ophthalmic microsurgery that provides high-resolution cross-sectional information of the surgical scene. We propose to build on its desirable qualities and present a method for tracking the orientation and location of a surgical needle. Thereby, we enable direct analysis of instrument-tissue interaction directly in OCT space without complex multimodal calibration that would be required with traditional instrument tracking methods. Method. The intersection of the needle with the iOCT scan is detected by a peculiar multi-step ellipse fitting that takes advantage of the directionality of the modality. The geometric modelling allows us to use the ellipse parameters and provide them into a latency aware estimator to infer the 5DOF pose during needle movement. Results. Experiments on phantom data and ex-vivo porcine eyes indicate that the algorithm retains angular precision especially during lateral needle movement and provides a more robust and consistent estimation than baseline methods. Conclusion. Using solely crosssectional iOCT information, we are able to successfully and robustly estimate a 5DOF pose of the instrument in less than 5.5 ms on a CPU.