Chenghao Zhang

Songhua Yang, Chenghao Zhang, Hongfei Xu et al.

The Biomedical Entity Normalization (BEN) task aims to align raw, unstructured medical entities to standard entities, thus promoting data coherence and facilitating better downstream medical applications. Recently, prompt learning methods have shown promising results in this task. However, existing research falls short in tackling the more complex Chinese BEN task, especially in the few-shot scenario with limited medical data, and the vast potential of the external medical knowledge base has yet to be fully harnessed. To address these challenges, we propose a novel Knowledge-injected Prompt Learning (PL-Knowledge) method. Specifically, our approach consists of five stages: candidate entity matching, knowledge extraction, knowledge encoding, knowledge injection, and prediction output. By effectively encoding the knowledge items contained in medical entities and incorporating them into our tailor-made knowledge-injected templates, the additional knowledge enhances the model's ability to capture latent relationships between medical entities, thus achieving a better match with the standard entities. We extensively evaluate our model on a benchmark dataset in both few-shot and full-scale scenarios. Our method outperforms existing baselines, with an average accuracy boost of 12.96\% in few-shot and 0.94\% in full-data cases, showcasing its excellence in the BEN task.

Chenghao Zhang, Qingqing Long, Ludi Wang et al.

Text-attributed graphs(TAGs) are pervasive in real-world systems,where each node carries its own textual features. In many cases these graphs are inherently heterogeneous, containing multiple node types and diverse edge types. Despite the ubiquity of such heterogeneous TAGs, there remains a lack of large-scale benchmark datasets. This shortage has become a critical bottleneck, hindering the development and fair comparison of representation learning methods on heterogeneous text-attributed graphs. In this paper, we introduce CITE - Catalytic Information Textual Entities Graph, the first and largest heterogeneous text-attributed citation graph benchmark for catalytic materials. CITE comprises over 438K nodes and 1.2M edges, spanning four relation types. In addition, we establish standardized evaluation procedures and conduct extensive benchmarking on the node classification task, as well as ablation experiments on the heterogeneous and textual properties of CITE. We compare four classes of learning paradigms, including homogeneous graph models, heterogeneous graph models, LLM(Large Language Model)-centric models, and LLM+Graph models. In a nutshell, we provide (i) an overview of the CITE dataset, (ii) standardized evaluation protocols, and (iii) baseline and ablation experiments across diverse modeling paradigms.