TTT-Unet: Enhancing U-Net with Test-Time Training Layers for Biomedical Image SegmentationRong Zhou, Zhengqing Yuan, Zhiling Yan et al.
Biomedical image segmentation is crucial for accurately diagnosing and analyzing various diseases. However, Convolutional Neural Networks (CNNs) and Transformers, the most commonly used architectures for this task, struggle to effectively capture long-range dependencies due to the inherent locality of CNNs and the computational complexity of Transformers. To address this limitation, we introduce TTT-Unet, a novel framework that integrates Test-Time Training (TTT) layers into the traditional U-Net architecture for biomedical image segmentation. TTT-Unet dynamically adjusts model parameters during the testing time, enhancing the model's ability to capture both local and long-range features. We evaluate TTT-Unet on multiple medical imaging datasets, including 3D abdominal organ segmentation in CT and MR images, instrument segmentation in endoscopy images, and cell segmentation in microscopy images. The results demonstrate that TTT-Unet consistently outperforms state-of-the-art CNN-based and Transformer-based segmentation models across all tasks. The code is available at https://github.com/rongzhou7/TTT-Unet.
Biomedical SAM 2: Segment Anything in Biomedical Images and VideosZhiling Yan, Weixiang Sun, Rong Zhou et al.
Medical image segmentation and video object segmentation are essential for diagnosing and analyzing diseases by identifying and measuring biological structures. Recent advances in natural domain have been driven by foundation models like the Segment Anything Model 2 (SAM-2). To explore the performance of SAM-2 in biomedical applications, we designed three evaluation pipelines for single-frame 2D image segmentation, multi-frame 3D image segmentation and multi-frame video segmentation with varied prompt designs, revealing SAM-2's limitations in medical contexts. Consequently, we developed BioSAM-2, an enhanced foundation model optimized for biomedical data based on SAM-2. Our experiments show that BioSAM-2 not only surpasses the performance of existing state-of-the-art foundation models but also matches or even exceeds specialist models, demonstrating its efficacy and potential in the medical domain.
14.9CLAug 26, 2024
Focused Large Language Models are Stable Many-Shot LearnersPeiwen Yuan, Shaoxiong Feng, Yiwei Li et al.
In-Context Learning (ICL) enables large language models (LLMs) to achieve rapid task adaptation by learning from demonstrations. With the increase in available context length of LLMs, recent experiments have shown that the performance of ICL does not necessarily scale well in many-shot (demonstration) settings. We theoretically and experimentally confirm that the reason lies in more demonstrations dispersing the model attention from the query, hindering its understanding of key content. Inspired by how humans learn from examples, we propose a training-free method FocusICL, which conducts triviality filtering to avoid attention being diverted by unimportant contents at token-level and operates hierarchical attention to further ensure sufficient attention towards current query at demonstration-level. We also design an efficient hyperparameter searching strategy for FocusICL based on model perplexity of demonstrations. Comprehensive experiments validate that FocusICL achieves an average performance improvement of 5.2% over vanilla ICL and scales well with many-shot demonstrations.
4.2CLSep 29, 2024
Instruction Embedding: Latent Representations of Instructions Towards Task IdentificationYiwei Li, Jiayi Shi, Shaoxiong Feng et al.
Instruction data is crucial for improving the capability of Large Language Models (LLMs) to align with human-level performance. Recent research LIMA demonstrates that alignment is essentially a process where the model adapts instructions' interaction style or format to solve various tasks, leveraging pre-trained knowledge and skills. Therefore, for instructional data, the most important aspect is the task it represents, rather than the specific semantics and knowledge information. The latent representations of instructions play roles for some instruction-related tasks like data selection and demonstrations retrieval. However, they are always derived from text embeddings, encompass overall semantic information that influences the representation of task categories. In this work, we introduce a new concept, instruction embedding, and construct Instruction Embedding Benchmark (IEB) for its training and evaluation. Then, we propose a baseline Prompt-based Instruction Embedding (PIE) method to make the representations more attention on tasks. The evaluation of PIE, alongside other embedding methods on IEB with two designed tasks, demonstrates its superior performance in accurately identifying task categories. Moreover, the application of instruction embeddings in four downstream tasks showcases its effectiveness and suitability for instruction-related tasks.
Turning Dust into Gold: Distilling Complex Reasoning Capabilities from LLMs by Leveraging Negative DataYiwei Li, Peiwen Yuan, Shaoxiong Feng et al.
Large Language Models (LLMs) have performed well on various reasoning tasks, but their inaccessibility and numerous parameters hinder wide application in practice. One promising way is distilling the reasoning ability from LLMs to small models by the generated chain-of-thought reasoning paths. In some cases, however, LLMs may produce incorrect reasoning chains, especially when facing complex mathematical problems. Previous studies only transfer knowledge from positive samples and drop the synthesized data with wrong answers. In this work, we illustrate the merit of negative data and propose a model specialization framework to distill LLMs with negative samples besides positive ones. The framework consists of three progressive steps, covering from training to inference stages, to absorb knowledge from negative data. We conduct extensive experiments across arithmetic reasoning tasks to demonstrate the role of negative data in distillation from LLM.
8.2CLJan 13, 2024
Assessing Large Language Models in Mechanical Engineering Education: A Study on Mechanics-Focused Conceptual UnderstandingJie Tian, Jixin Hou, Zihao Wu et al.
This study is a pioneering endeavor to investigate the capabilities of Large Language Models (LLMs) in addressing conceptual questions within the domain of mechanical engineering with a focus on mechanics. Our examination involves a manually crafted exam encompassing 126 multiple-choice questions, spanning various aspects of mechanics courses, including Fluid Mechanics, Mechanical Vibration, Engineering Statics and Dynamics, Mechanics of Materials, Theory of Elasticity, and Continuum Mechanics. Three LLMs, including ChatGPT (GPT-3.5), ChatGPT (GPT-4), and Claude (Claude-2.1), were subjected to evaluation against engineering faculties and students with or without mechanical engineering background. The findings reveal GPT-4's superior performance over the other two LLMs and human cohorts in answering questions across various mechanics topics, except for Continuum Mechanics. This signals the potential future improvements for GPT models in handling symbolic calculations and tensor analyses. The performances of LLMs were all significantly improved with explanations prompted prior to direct responses, underscoring the crucial role of prompt engineering. Interestingly, GPT-3.5 demonstrates improved performance with prompts covering a broader domain, while GPT-4 excels with prompts focusing on specific subjects. Finally, GPT-4 exhibits notable advancements in mitigating input bias, as evidenced by guessing preferences for humans. This study unveils the substantial potential of LLMs as highly knowledgeable assistants in both mechanical pedagogy and scientific research.
4.2CLOct 22, 2024
Analyzing Nobel Prize Literature with Large Language ModelsZhenyuan Yang, Zhengliang Liu, Jing Zhang et al.
This study examines the capabilities of advanced Large Language Models (LLMs), particularly the o1 model, in the context of literary analysis. The outputs of these models are compared directly to those produced by graduate-level human participants. By focusing on two Nobel Prize-winning short stories, 'Nine Chapters' by Han Kang, the 2024 laureate, and 'Friendship' by Jon Fosse, the 2023 laureate, the research explores the extent to which AI can engage with complex literary elements such as thematic analysis, intertextuality, cultural and historical contexts, linguistic and structural innovations, and character development. Given the Nobel Prize's prestige and its emphasis on cultural, historical, and linguistic richness, applying LLMs to these works provides a deeper understanding of both human and AI approaches to interpretation. The study uses qualitative and quantitative evaluations of coherence, creativity, and fidelity to the text, revealing the strengths and limitations of AI in tasks typically reserved for human expertise. While LLMs demonstrate strong analytical capabilities, particularly in structured tasks, they often fall short in emotional nuance and coherence, areas where human interpretation excels. This research underscores the potential for human-AI collaboration in the humanities, opening new opportunities in literary studies and beyond.