Guillaume Richard

Raphael Boige, Yannis Flet-Berliac, Arthur Flajolet et al. · stanford

Self-supervised learning has brought about a revolutionary paradigm shift in various computing domains, including NLP, vision, and biology. Recent approaches involve pre-training transformer models on vast amounts of unlabeled data, serving as a starting point for efficiently solving downstream tasks. In reinforcement learning, researchers have recently adapted these approaches, developing models pre-trained on expert trajectories. This advancement enables the models to tackle a broad spectrum of tasks, ranging from robotics to recommendation systems. However, existing methods mostly rely on intricate pre-training objectives tailored to specific downstream applications. This paper conducts a comprehensive investigation of models, referred to as pre-trained action-state transformer agents (PASTA). Our study covers a unified methodology and covers an extensive set of general downstream tasks including behavioral cloning, offline RL, sensor failure robustness, and dynamics change adaptation. Our objective is to systematically compare various design choices and offer valuable insights that will aid practitioners in developing robust models. Key highlights of our study include tokenization at the component level for actions and states, the use of fundamental pre-training objectives such as next token prediction or masked language modeling, simultaneous training of models across multiple domains, and the application of various fine-tuning strategies. In this study, the developed models contain fewer than 7 million parameters allowing a broad community to use these models and reproduce our experiments. We hope that this study will encourage further research into the use of transformers with first principle design choices to represent RL trajectories and contribute to robust policy learning.

Valentin Macé, Raphaël Boige, Felix Chalumeau et al.

In the context of neuroevolution, Quality-Diversity algorithms have proven effective in generating repertoires of diverse and efficient policies by relying on the definition of a behavior space. A natural goal induced by the creation of such a repertoire is trying to achieve behaviors on demand, which can be done by running the corresponding policy from the repertoire. However, in uncertain environments, two problems arise. First, policies can lack robustness and repeatability, meaning that multiple episodes under slightly different conditions often result in very different behaviors. Second, due to the discrete nature of the repertoire, solutions vary discontinuously. Here we present a new approach to achieve behavior-conditioned trajectory generation based on two mechanisms: First, MAP-Elites Low-Spread (ME-LS), which constrains the selection of solutions to those that are the most consistent in the behavior space. Second, the Quality-Diversity Transformer (QDT), a Transformer-based model conditioned on continuous behavior descriptors, which trains on a dataset generated by policies from a ME-LS repertoire and learns to autoregressively generate sequences of actions that achieve target behaviors. Results show that ME-LS produces consistent and robust policies, and that its combination with the QDT yields a single policy capable of achieving diverse behaviors on demand with high accuracy.

Juan Jose Garau-Luis, Patrick Bordes, Liam Gonzalez et al.

Biological sequences encode fundamental instructions for the building blocks of life, in the form of DNA, RNA, and proteins. Modeling these sequences is key to understand disease mechanisms and is an active research area in computational biology. Recently, Large Language Models have shown great promise in solving certain biological tasks but current approaches are limited to a single sequence modality (DNA, RNA, or protein). Key problems in genomics intrinsically involve multiple modalities, but it remains unclear how to adapt general-purpose sequence models to those cases. In this work we propose a multi-modal model that connects DNA, RNA, and proteins by leveraging information from different pre-trained modality-specific encoders. We demonstrate its capabilities by applying it to the largely unsolved problem of predicting how multiple RNA transcript isoforms originate from the same gene (i.e. same DNA sequence) and map to different transcription expression levels across various human tissues. We show that our model, dubbed IsoFormer, is able to accurately predict differential transcript expression, outperforming existing methods and leveraging the use of multiple modalities. Our framework also achieves efficient transfer knowledge from the encoders pre-training as well as in between modalities. We open-source our model, paving the way for new multi-modal gene expression approaches.

Thomas Pierrot, Guillaume Richard, Karim Beguir et al.

In this work, we consider the problem of Quality-Diversity (QD) optimization with multiple objectives. QD algorithms have been proposed to search for a large collection of both diverse and high-performing solutions instead of a single set of local optima. Thriving for diversity was shown to be useful in many industrial and robotics applications. On the other hand, most real-life problems exhibit several potentially antagonist objectives to be optimized. Hence being able to optimize for multiple objectives with an appropriate technique while thriving for diversity is important to many fields. Here, we propose an extension of the MAP-Elites algorithm in the multi-objective setting: Multi-Objective MAP-Elites (MOME). Namely, it combines the diversity inherited from the MAP-Elites grid algorithm with the strength of multi-objective optimizations by filling each cell with a Pareto Front. As such, it allows to extract diverse solutions in the descriptor space while exploring different compromises between objectives. We evaluate our method on several tasks, from standard optimization problems to robotics simulations. Our experimental evaluation shows the ability of MOME to provide diverse solutions while providing global performances similar to standard multi-objective algorithms.